notifications@ctakes.apache.org, 2013-02

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- [jira] [Updated] (CTAKES-132) Some Knowtator EntityMentions annotations have no spans when brought into UIMA - posted by "Stephen Wu (JIRA)" <ji...@apache.org> on 2013/02/01 17:30:12 UTC, 0 replies.
- [jira] [Updated] (CTAKES-131) Reconcile Type System with the updated CEM templates - posted by "Stephen Wu (JIRA)" <ji...@apache.org> on 2013/02/01 17:30:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 02:09:11 UTC, 0 replies.
- [jira] [Commented] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 02:13:11 UTC, 0 replies.
- [jira] [Created] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 17:56:14 UTC, 0 replies.
- [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. - posted by "Steven Bethard (JIRA)" <ji...@apache.org> on 2013/02/04 18:10:13 UTC, 2 replies.
- [jira] [Created] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 19:34:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 19:44:15 UTC, 0 replies.
- [jira] [Updated] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 19:44:15 UTC, 0 replies.
- [jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 20:06:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-138) Remove 3rd party jars from our SVN - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 20:08:12 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-136) Move models and binary from the src/main/resources to SourceForge - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 20:08:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-142) can't find lookup/snomed-like_codes_sample Side effect descriptors need relative path updates - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/04 20:26:13 UTC, 0 replies.
- [jira] [Updated] (CTAKES-130) DictionaryLookupAnnotatorDB default config error - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 22:12:13 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-130) DictionaryLookupAnnotatorDB default config error - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 22:14:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-143) dictionary lookup iterates inefficiently - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/04 22:34:14 UTC, 0 replies.
- [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/04 22:44:14 UTC, 2 replies.
- [jira] [Created] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 22:48:12 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/04 22:54:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-145) inconsistent handling of upper ascii - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/05 17:36:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/05 21:05:13 UTC, 2 replies.
- [jira] [Created] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 04:19:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 04:21:12 UTC, 1 replies.
- [jira] [Resolved] (CTAKES-143) dictionary lookup iterates inefficiently - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/06 15:27:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 16:23:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 16:25:14 UTC, 0 replies.
- [jira] [Updated] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 16:43:14 UTC, 1 replies.
- [jira] [Commented] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 16:49:12 UTC, 1 replies.
- [jira] [Assigned] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 17:19:13 UTC, 0 replies.
- [jira] [Assigned] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 17:21:13 UTC, 0 replies.
- [jira] [Updated] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 17:37:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/06 17:37:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-149) cTAKES is not thread safe. - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:05:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:07:13 UTC, 0 replies.
- [jira] [Updated] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:07:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:11:13 UTC, 0 replies.
- [jira] [Updated] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:15:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:21:13 UTC, 0 replies.
- [jira] [Updated] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering - posted by "Kim Ebert (JIRA)" <ji...@apache.org> on 2013/02/06 18:23:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-153) clean up constituency parser code - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/06 23:15:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-154) Add i2b2 features to assertion module - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/07 21:45:13 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-153) clean up constituency parser code - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/07 21:45:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters - posted by "Steven Bethard (JIRA)" <ji...@apache.org> on 2013/02/08 06:19:15 UTC, 0 replies.
- [jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/08 16:51:12 UTC, 1 replies.
- [jira] [Created] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/08 21:19:17 UTC, 0 replies.
- [jira] [Created] (CTAKES-157) ctakes-side-effect .classpath has extraneous entry - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/08 23:31:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-158) DateAnnotation bug when two dates directly adjacent - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/11 18:29:13 UTC, 0 replies.
- [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates - posted by "Stephen Wu (JIRA)" <ji...@apache.org> on 2013/02/14 19:25:12 UTC, 2 replies.
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- [jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating - posted by "Steven Bethard (JIRA)" <ji...@apache.org> on 2013/02/15 01:13:12 UTC, 3 replies.
- [jira] [Commented] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/15 18:27:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-159) Increase the use of java generics in the cTakes code - posted by "Sean Finan (JIRA)" <ji...@apache.org> on 2013/02/15 23:09:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-160) Exception Refinement - posted by "Sean Finan (JIRA)" <ji...@apache.org> on 2013/02/15 23:11:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-161) Java 1.5+ - posted by "Sean Finan (JIRA)" <ji...@apache.org> on 2013/02/15 23:15:12 UTC, 0 replies.
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- [jira] [Created] (CTAKES-162) Command line scripts leave the user back one directory - posted by "Troy Bleeker (JIRA)" <ji...@apache.org> on 2013/02/18 20:41:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-163) testpatient_plaintext_1.txt not included in binary distribution - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/18 21:45:12 UTC, 0 replies.
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- [jira] [Commented] (CTAKES-163) testpatient_plaintext_1.txt not included in binary distribution - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/20 17:17:14 UTC, 0 replies.
- [jira] [Created] (CTAKES-164) UMLS password could not be set in shell as ctakes.umlspw - posted by "Sean Finan (JIRA)" <ji...@apache.org> on 2013/02/20 18:07:12 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-164) UMLS password could not be set in shell as ctakes.umlspw - posted by "Sean Finan (JIRA)" <ji...@apache.org> on 2013/02/20 18:25:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/20 20:53:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-166) RelationExtractorAggregate.xml is missing a name - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/20 20:57:14 UTC, 0 replies.
- [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/21 03:30:12 UTC, 5 replies.
- [jira] [Created] (CTAKES-167) dictionary lookup calls identifies "to" as a named entity - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/21 22:38:13 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-167) dictionary lookup calls identifies "to" as a named entity - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/21 22:56:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-168) clean up maven/project dependencies - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/22 16:20:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-169) SectionSegmentAnnotator.java is in core, but the sample SectionSegmentAnnotator.xml descriptor is in ctakes-clinical-pipeline - posted by "Pei Chen (JIRA)" <ji...@apache.org> on 2013/02/22 18:48:12 UTC, 0 replies.
- [jira] [Created] (CTAKES-170) relation extractor has dependency on clinical pipeilne - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/22 21:14:12 UTC, 0 replies.
- [jira] [Resolved] (CTAKES-170) relation extractor has dependency on clinical pipeilne - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/22 21:18:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/22 21:20:14 UTC, 7 replies.
- [jira] [Created] (CTAKES-171) jdom version breaks sectionizer - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/22 23:36:13 UTC, 0 replies.
- [jira] [Created] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator - posted by "James Joseph Masanz (JIRA)" <ji...@apache.org> on 2013/02/25 20:50:14 UTC, 0 replies.
- [jira] [Created] (CTAKES-173) generalize relation-extractor for relation types that are outside a single sentence - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/25 21:30:12 UTC, 0 replies.
- [jira] [Commented] (CTAKES-173) generalize relation-extractor for relation types that are outside a single sentence - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/25 21:38:13 UTC, 0 replies.
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- [jira] [Created] (CTAKES-174) use sections for coreference resolution - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/26 15:30:13 UTC, 0 replies.
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- [jira] [Created] (CTAKES-175) print errors in assertion module evaluation - posted by "Tim Miller (JIRA)" <ji...@apache.org> on 2013/02/28 17:47:12 UTC, 0 replies.
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