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Posted to notifications@ctakes.apache.org by "Pei Chen (JIRA)" <ji...@apache.org> on 2014/08/25 21:04:59 UTC
[jira] [Created] (CTAKES-308)
org.apache.ctakes.ytex.umls.dao.UMLSDaoTest failure
Pei Chen created CTAKES-308:
-------------------------------
Summary: org.apache.ctakes.ytex.umls.dao.UMLSDaoTest failure
Key: CTAKES-308
URL: https://issues.apache.org/jira/browse/CTAKES-308
Project: cTAKES
Issue Type: Bug
Components: ctakes-ytex
Reporter: Pei Chen
Priority: Minor
2014-08-25 13:33:50,830 WARN net.sf.ehcache.CacheManager - Creating a new instance of CacheManager using the diskStorePath "/var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T/" which is already used by an existing CacheManager.
The source of the configuration was
net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@7433a719.
The diskStore path for this CacheManager will be set to /var/folders/qc/d7xd4zzs0_xcybv88skt5_7m0000gn/T//ehcache_auto_created_1408988030830.
To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance.
2014-08-25 13:33:51,082 WARN
org.hibernate.engine.jdbc.spi.SqlExceptionHelper - SQL Error: 62,
SQLState: S0010
2014-08-25 13:33:51,082 ERROR
org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Unknown JDBC escape sequence: {{db.schema}.MRCONSO mrconso0_ where mrconso0_.aui>?
and length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order by mrconso0_.aui
2014-08-25 13:33:51,085 WARN
org.apache.ctakes.ytex.umls.dao.UMLSDaoTest - sql exception - mrconso probably doesn't exist, check error
org.hibernate.exception.SQLGrammarException: could not prepare statement
at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:123)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:125)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:188)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:159)
at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1859)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1836)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1816)
at org.hibernate.loader.Loader.doQuery(Loader.java:900)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:342)
at org.hibernate.loader.Loader.doList(Loader.java:2526)
at org.hibernate.loader.Loader.doList(Loader.java:2512)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2342)
at org.hibernate.loader.Loader.list(Loader.java:2337)
at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:495)
at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:357)
at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:195)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1269)
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:101)
at org.apache.ctakes.ytex.umls.dao.UMLSDaoImpl.getAllAuiStr(UMLSDaoImpl.java:106)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:319)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:90)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at com.sun.proxy.$Proxy11.getAllAuiStr(Unknown Source)
at org.apache.ctakes.ytex.umls.dao.UMLSDaoTest.testGetAllAuiStr(UMLSDaoTest.java:53)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:45)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:42)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:263)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:68)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:47)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:231)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:60)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:229)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:50)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:222)
at org.junit.runners.ParentRunner.run(ParentRunner.java:300)
at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:249)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:142)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:113)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:104)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:75)
Caused by: java.sql.SQLException: Unknown JDBC escape sequence:
{{db.schema}.MRCONSO mrconso0_ where mrconso0_.aui>? and
length(mrconso0_.aui)>0 and length(mrconso0_.str)<200 and mrconso0_.lat='ENG' order by mrconso0_.aui
at org.hsqldb.jdbc.jdbcConnection.onStartEscapeSequence(Unknown Source)
at org.hsqldb.jdbc.jdbcConnection.nativeSQL(Unknown Source)
at org.hsqldb.jdbc.jdbcPreparedStatement.<init>(Unknown Source)
at org.hsqldb.jdbc.jdbcConnection.prepareStatement(Unknown Source)
at org.apache.commons.dbcp.DelegatingConnection.prepareStatement(DelegatingConnection.java:281)
at org.apache.commons.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.prepareStatement(PoolingDataSource.java:313)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:161)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:182)
... 60 more
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.202 sec
Results :
Tests in error:
setSchema(org.apache.ctakes.jdl.data.xml.ValidationTest)
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