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Posted to commits@beam.apache.org by "Asha Rostamianfar (JIRA)" <ji...@apache.org> on 2018/01/04 22:05:00 UTC

[jira] [Closed] (BEAM-2774) Add I/O source for VCF files (python)

     [ https://issues.apache.org/jira/browse/BEAM-2774?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Asha Rostamianfar closed BEAM-2774.
-----------------------------------
       Resolution: Fixed
    Fix Version/s: 2.3.0

The main code is done. Additional features (e.g. ReadAllFromVcf to handle massive number of files) will be done in separate issues.

> Add I/O source for VCF files (python)
> -------------------------------------
>
>                 Key: BEAM-2774
>                 URL: https://issues.apache.org/jira/browse/BEAM-2774
>             Project: Beam
>          Issue Type: New Feature
>          Components: sdk-py-core
>            Reporter: Asha Rostamianfar
>            Assignee: Miles Saul
>             Fix For: 2.3.0
>
>   Original Estimate: 336h
>  Remaining Estimate: 336h
>
> A new I/O source for reading (and eventually writing) VCF files [1] for Python. The design doc is available at https://docs.google.com/document/d/1jsdxOPALYYlhnww2NLURS8NKXaFyRSJrcGbEDpY9Lkw/edit
> [1] http://samtools.github.io/hts-specs/VCFv4.3.pdf



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