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Posted to issues@arrow.apache.org by "jorisvandenbossche (via GitHub)" <gi...@apache.org> on 2023/03/30 15:16:32 UTC
[GitHub] [arrow] jorisvandenbossche opened a new issue, #34805: [CI][Python] Cython test is failing in conda packaging builds
jorisvandenbossche opened a new issue, #34805:
URL: https://github.com/apache/arrow/issues/34805
See for example this [log output](https://dev.azure.com/ursacomputing/crossbow/_build/results?buildId=46427&view=logs&j=0da5d1d9-276d-5173-c4c4-9d4d4ed14fdb&t=d9b15392-e4ce-5e4c-0c8c-b69645229181) of the latest [conda-linux-x64-cpu-py3](https://github.com/ursacomputing/crossbow/runs/12391191018) build.
The `test_cpp_extension_in_python` is failing, which is a test building some custom cython, and it's failing with
```
...
# Compile extension module
> subprocess.check_call([sys.executable, 'setup.py',
'build_ext', '--inplace'],
env=subprocess_env)
...
> raise CalledProcessError(retcode, cmd)
E subprocess.CalledProcessError: Command '['$PREFIX/bin/python3.11', 'setup.py', 'build_ext', '--inplace']' returned non-zero exit status 1.
../../../subprocess.py:413: CalledProcessError
----------------------------- Captured stdout call -----------------------------
Compiling extensions.pyx because it changed.
[1/1] Cythonizing extensions.pyx
Extension module: <setuptools.extension.Extension('extensions') at 0x7f8bfb469c90> ['$PREFIX/lib/python3.11/site-packages/numpy/core/include', '$PREFIX/lib/python3.11/site-packages/pyarrow/include'] ['arrow_python', 'arrow'] ['$PREFIX/lib/python3.11/site-packages/pyarrow', '$PREFIX/lib']
running build_ext
building 'extensions' extension
creating build
creating build/temp.linux-x86_64-cpython-311
gcc -pthread -B $PREFIX/compiler_compat -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem $PREFIX/include -fPIC -O2 -isystem $PREFIX/include -fPIC -I$PREFIX/lib/python3.11/site-packages/numpy/core/include -I$PREFIX/lib/python3.11/site-packages/pyarrow/include -I$PREFIX/include/python3.11 -c extensions.cpp -o build/temp.linux-x86_64-cpython-311/extensions.o -std=c++17
----------------------------- Captured stderr call -----------------------------
error: command 'gcc' failed: No such file or directory
```
So it's complaining about "gcc" not found. I don't know if this test is supposed to work on those builds, but the strange thing is that we have other tests that call the exact same subprocess command, and those are not failing.
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[GitHub] [arrow] h-vetinari commented on issue #34805: [CI][Python] Cython test is failing in conda packaging builds
Posted by "h-vetinari (via GitHub)" <gi...@apache.org>.
h-vetinari commented on issue #34805:
URL: https://github.com/apache/arrow/issues/34805#issuecomment-1507874311
Yes, I added a compiler to the test requirements, so `gcc` will be found on linux
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[GitHub] [arrow] jorisvandenbossche closed issue #34805: [CI][Python] Cython test is failing in conda packaging builds
Posted by "jorisvandenbossche (via GitHub)" <gi...@apache.org>.
jorisvandenbossche closed issue #34805: [CI][Python] Cython test is failing in conda packaging builds
URL: https://github.com/apache/arrow/issues/34805
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[GitHub] [arrow] jorisvandenbossche commented on issue #34805: [CI][Python] Cython test is failing in conda packaging builds
Posted by "jorisvandenbossche (via GitHub)" <gi...@apache.org>.
jorisvandenbossche commented on issue #34805:
URL: https://github.com/apache/arrow/issues/34805#issuecomment-1506638418
This seems to have been fixed by https://github.com/apache/arrow/pull/34652
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