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Posted to commits@ctakes.apache.org by mm...@apache.org on 2016/12/16 03:55:38 UTC
svn commit: r1774552 [11/11] - in /ctakes/trunk:
ctakes-dependency-parser/src/main/java/org/apache/ctakes/dependency/parser/ae/util/
ctakes-regression-test/desc/analysis_engine/
ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml?rev=1774552&r1=1774551&r2=1774552&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml (original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml Fri Dec 16 03:55:37 2016
@@ -19,99 +19,99 @@
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- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1009" _ref_sofa="3" begin="371" end="373" tokenNumber="86" normalizedForm="no" partOfSpeech="DT" capitalization="1" numPosition="0" canonicalForm="no"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1021" _ref_sofa="3" begin="374" end="378" tokenNumber="87" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="pain"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1033" _ref_sofa="3" begin="379" end="381" tokenNumber="88" normalizedForm="or" partOfSpeech="CC" capitalization="0" numPosition="0" canonicalForm="or"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1045" _ref_sofa="3" begin="382" end="392" tokenNumber="89" normalizedForm="discomfort" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="discomfort"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1057" _ref_sofa="3" begin="393" end="401" tokenNumber="90" normalizedForm="report" partOfSpeech="VBN" capitalization="0" numPosition="0" canonicalForm="report"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="345" _ref_sofa="3" begin="94" end="95" tokenNumber="16" normalizedForm="," partOfSpeech=","/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="446" _ref_sofa="3" begin="134" end="135" tokenNumber="25" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="478" _ref_sofa="3" begin="150" end="151" tokenNumber="29" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="486" _ref_sofa="3" begin="152" end="153" tokenNumber="30" normalizedForm="(" partOfSpeech="-LRB-"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="503" _ref_sofa="3" begin="156" end="157" tokenNumber="32" normalizedForm=")" partOfSpeech="-RRB-"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="535" _ref_sofa="3" begin="174" end="175" tokenNumber="36" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="588" _ref_sofa="3" begin="199" end="200" tokenNumber="41" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="629" _ref_sofa="3" begin="212" end="213" tokenNumber="46" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="685" _ref_sofa="3" begin="243" end="244" tokenNumber="52" normalizedForm="(" partOfSpeech="-LRB-"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="705" _ref_sofa="3" begin="249" end="250" tokenNumber="54" normalizedForm=")" partOfSpeech="-RRB-"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="713" _ref_sofa="3" begin="250" end="251" tokenNumber="55" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="742" _ref_sofa="3" begin="265" end="266" tokenNumber="58" normalizedForm="," partOfSpeech=","/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="835" _ref_sofa="3" begin="300" end="301" tokenNumber="67" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="879" _ref_sofa="3" begin="322" end="323" tokenNumber="72" normalizedForm=":" partOfSpeech=":"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="908" _ref_sofa="3" begin="332" end="333" tokenNumber="75" normalizedForm="," partOfSpeech=","/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="961" _ref_sofa="3" begin="352" end="353" tokenNumber="80" normalizedForm="/" partOfSpeech="SYM"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="981" _ref_sofa="3" begin="355" end="356" tokenNumber="82" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="1001" _ref_sofa="3" begin="369" end="370" tokenNumber="85" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="1069" _ref_sofa="3" begin="401" end="402" tokenNumber="91" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="389" _ref_sofa="3" begin="108" end="110" tokenNumber="20" normalizedForm="50" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="494" _ref_sofa="3" begin="153" end="156" tokenNumber="31" normalizedForm="555" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="543" _ref_sofa="3" begin="176" end="179" tokenNumber="37" normalizedForm="144" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="596" _ref_sofa="3" begin="201" end="203" tokenNumber="42" normalizedForm="45" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="721" _ref_sofa="3" begin="252" end="256" tokenNumber="56" normalizedForm="1500" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="794" _ref_sofa="3" begin="284" end="286" tokenNumber="63" normalizedForm="20" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="887" _ref_sofa="3" begin="324" end="326" tokenNumber="73" normalizedForm="40" partOfSpeech="CD" numType="1"/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="940" _ref_sofa="3" begin="347" end="350" tokenNumber="78" normalizedForm="1.0" partOfSpeech="CD" numType="2"/>
- <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="786" _ref_sofa="3" begin="282" end="283" tokenNumber="62" normalizedForm="+" partOfSpeech="SYM"/>
- <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="803" _ref_sofa="3" begin="286" end="287" tokenNumber="64" normalizedForm="%" partOfSpeech="NN"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="823" _ref_sofa="3" begin="292" end="300" tokenNumber="66" normalizedForm="activity" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="843" _ref_sofa="3" begin="303" end="308" tokenNumber="69" normalizedForm="Daily" partOfSpeech="JJ" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="855" _ref_sofa="3" begin="309" end="316" tokenNumber="70" normalizedForm="Protein" partOfSpeech="NN" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="867" _ref_sofa="3" begin="317" end="322" tokenNumber="71" normalizedForm="needs" partOfSpeech="VBZ" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="896" _ref_sofa="3" begin="327" end="332" tokenNumber="74" normalizedForm="grams" partOfSpeech="NNS" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="916" _ref_sofa="3" begin="335" end="343" tokenNumber="76" normalizedForm="assessed" partOfSpeech="VBN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="928" _ref_sofa="3" begin="344" end="346" tokenNumber="77" normalizedForm="as" partOfSpeech="IN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="949" _ref_sofa="3" begin="351" end="352" tokenNumber="79" normalizedForm="g" partOfSpeech="NNS" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="969" _ref_sofa="3" begin="353" end="355" tokenNumber="81" normalizedForm="kg" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="989" _ref_sofa="3" begin="358" end="369" tokenNumber="84" normalizedForm="Colonoscopy" partOfSpeech="NN" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1009" _ref_sofa="3" begin="371" end="373" tokenNumber="86" normalizedForm="No" partOfSpeech="DT" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1021" _ref_sofa="3" begin="374" end="378" tokenNumber="87" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1033" _ref_sofa="3" begin="379" end="381" tokenNumber="88" normalizedForm="or" partOfSpeech="CC" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1045" _ref_sofa="3" begin="382" end="392" tokenNumber="89" normalizedForm="discomfort" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="1057" _ref_sofa="3" begin="393" end="401" tokenNumber="90" normalizedForm="reported" partOfSpeech="VBN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="345" _ref_sofa="3" begin="94" end="95" tokenNumber="16" partOfSpeech=","/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="446" _ref_sofa="3" begin="134" end="135" tokenNumber="25" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="478" _ref_sofa="3" begin="150" end="151" tokenNumber="29" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="486" _ref_sofa="3" begin="152" end="153" tokenNumber="30" partOfSpeech="-LRB-"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="503" _ref_sofa="3" begin="156" end="157" tokenNumber="32" partOfSpeech="-RRB-"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="535" _ref_sofa="3" begin="174" end="175" tokenNumber="36" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="588" _ref_sofa="3" begin="199" end="200" tokenNumber="41" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="629" _ref_sofa="3" begin="212" end="213" tokenNumber="46" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="685" _ref_sofa="3" begin="243" end="244" tokenNumber="52" partOfSpeech="-LRB-"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="705" _ref_sofa="3" begin="249" end="250" tokenNumber="54" partOfSpeech="-RRB-"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="713" _ref_sofa="3" begin="250" end="251" tokenNumber="55" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="742" _ref_sofa="3" begin="265" end="266" tokenNumber="58" partOfSpeech=","/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="835" _ref_sofa="3" begin="300" end="301" tokenNumber="67" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="879" _ref_sofa="3" begin="322" end="323" tokenNumber="72" partOfSpeech=":"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="908" _ref_sofa="3" begin="332" end="333" tokenNumber="75" partOfSpeech=","/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="961" _ref_sofa="3" begin="352" end="353" tokenNumber="80" partOfSpeech="SYM"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="981" _ref_sofa="3" begin="355" end="356" tokenNumber="82" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="1001" _ref_sofa="3" begin="369" end="370" tokenNumber="85" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="1069" _ref_sofa="3" begin="401" end="402" tokenNumber="91" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="389" _ref_sofa="3" begin="108" end="110" tokenNumber="20" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="494" _ref_sofa="3" begin="153" end="156" tokenNumber="31" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="543" _ref_sofa="3" begin="176" end="179" tokenNumber="37" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="596" _ref_sofa="3" begin="201" end="203" tokenNumber="42" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="721" _ref_sofa="3" begin="252" end="256" tokenNumber="56" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="794" _ref_sofa="3" begin="284" end="286" tokenNumber="63" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="887" _ref_sofa="3" begin="324" end="326" tokenNumber="73" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="940" _ref_sofa="3" begin="347" end="350" tokenNumber="78" partOfSpeech="CD" numType="2"/>
+ <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="786" _ref_sofa="3" begin="282" end="283" tokenNumber="62" partOfSpeech="SYM"/>
+ <org.apache.ctakes.typesystem.type.syntax.SymbolToken _indexed="1" _id="803" _ref_sofa="3" begin="286" end="287" tokenNumber="64" partOfSpeech="NN"/>
<org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation _indexed="1" _id="1077" _ref_sofa="3" begin="180" end="182" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="1095" _ref_sofa="3" begin="176" end="182" id="1" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="1113" _ref_sofa="3" begin="201" end="206" id="3" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
@@ -193,10 +193,10 @@
<uima.cas.FSArray _id="1593" size="1">
<i>1583</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1538" codingScheme="SNOMED" code="200309" oid="200309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
<org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1528" codingScheme="SNOMED" code="100309" oid="100309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="1538" codingScheme="SNOMED" code="200309" oid="200309#SNOMED" score="0.0" disambiguated="false" cui="Cui0309" tui="T_DD"/>
<uima.cas.FSArray _id="1548" size="2">
- <i>1528</i>
<i>1538</i>
+ <i>1528</i>
</uima.cas.FSArray>
</CAS>
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml?rev=1774552&r1=1774551&r2=1774552&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml (original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml Fri Dec 16 03:55:37 2016
@@ -6,26 +6,26 @@
<org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="21" _ref_sofa="3" begin="2" end="45" sentenceNumber="0"/>
<org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="27" _ref_sofa="3" begin="47" end="59" sentenceNumber="1"/>
<org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="33" _ref_sofa="3" begin="61" end="76" sentenceNumber="2"/>
- <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="39" _ref_sofa="3" begin="0" end="2" tokenNumber="0" normalizedForm=" "/>
- <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="47" _ref_sofa="3" begin="45" end="47" tokenNumber="10" normalizedForm=" "/>
- <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="55" _ref_sofa="3" begin="59" end="61" tokenNumber="14" normalizedForm=" "/>
- <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="63" _ref_sofa="3" begin="76" end="78" tokenNumber="19" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="39" _ref_sofa="3" begin="0" end="2" tokenNumber="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="47" _ref_sofa="3" begin="45" end="47" tokenNumber="10"/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="55" _ref_sofa="3" begin="59" end="61" tokenNumber="14"/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="63" _ref_sofa="3" begin="76" end="78" tokenNumber="19"/>
<org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="71" _ref_sofa="3" begin="2" end="5" tokenNumber="1" normalizedForm="The" partOfSpeech="DT" capitalization="1" numPosition="0"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="83" _ref_sofa="3" begin="6" end="13" tokenNumber="2" normalizedForm="patient" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="patient"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="95" _ref_sofa="3" begin="14" end="22" tokenNumber="3" normalizedForm="report" partOfSpeech="VBD" capitalization="0" numPosition="0" canonicalForm="report"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="107" _ref_sofa="3" begin="23" end="27" tokenNumber="4" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="pain"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="83" _ref_sofa="3" begin="6" end="13" tokenNumber="2" normalizedForm="patient" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="95" _ref_sofa="3" begin="14" end="22" tokenNumber="3" normalizedForm="reported" partOfSpeech="VBD" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="107" _ref_sofa="3" begin="23" end="27" tokenNumber="4" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0"/>
<org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="119" _ref_sofa="3" begin="28" end="30" tokenNumber="5" normalizedForm="in" partOfSpeech="IN" capitalization="0" numPosition="0"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="131" _ref_sofa="3" begin="31" end="34" tokenNumber="6" normalizedForm="her" partOfSpeech="PRP$" capitalization="0" numPosition="0" canonicalForm="her"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="143" _ref_sofa="3" begin="35" end="40" tokenNumber="7" normalizedForm="upp" partOfSpeech="JJ" capitalization="0" numPosition="0" canonicalForm="upp"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="155" _ref_sofa="3" begin="41" end="44" tokenNumber="8" normalizedForm="arm" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="arm"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="175" _ref_sofa="3" begin="47" end="49" tokenNumber="11" normalizedForm="no" partOfSpeech="DT" capitalization="1" numPosition="0" canonicalForm="no"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="187" _ref_sofa="3" begin="50" end="58" tokenNumber="12" normalizedForm="swel" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="swel"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="207" _ref_sofa="3" begin="61" end="68" tokenNumber="15" normalizedForm="aspirin" partOfSpeech="NNP" capitalization="1" numPosition="0" canonicalForm="aspirin"/>
- <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="228" _ref_sofa="3" begin="73" end="75" tokenNumber="17" normalizedForm="mg" partOfSpeech="NNS" capitalization="0" numPosition="0" canonicalForm="mg"/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="167" _ref_sofa="3" begin="44" end="45" tokenNumber="9" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="199" _ref_sofa="3" begin="58" end="59" tokenNumber="13" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="240" _ref_sofa="3" begin="75" end="76" tokenNumber="18" normalizedForm="." partOfSpeech="."/>
- <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="219" _ref_sofa="3" begin="69" end="72" tokenNumber="16" normalizedForm="325" partOfSpeech="CD" numType="1"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="131" _ref_sofa="3" begin="31" end="34" tokenNumber="6" normalizedForm="her" partOfSpeech="PRP$" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="143" _ref_sofa="3" begin="35" end="40" tokenNumber="7" normalizedForm="upper" partOfSpeech="JJ" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="155" _ref_sofa="3" begin="41" end="44" tokenNumber="8" normalizedForm="arm" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="175" _ref_sofa="3" begin="47" end="49" tokenNumber="11" normalizedForm="No" partOfSpeech="DT" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="187" _ref_sofa="3" begin="50" end="58" tokenNumber="12" normalizedForm="swelling" partOfSpeech="NN" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="207" _ref_sofa="3" begin="61" end="68" tokenNumber="15" normalizedForm="Aspirin" partOfSpeech="NNP" capitalization="1" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="228" _ref_sofa="3" begin="73" end="75" tokenNumber="17" normalizedForm="mg" partOfSpeech="NNS" capitalization="0" numPosition="0"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="167" _ref_sofa="3" begin="44" end="45" tokenNumber="9" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="199" _ref_sofa="3" begin="58" end="59" tokenNumber="13" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="240" _ref_sofa="3" begin="75" end="76" tokenNumber="18" partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.NumToken _indexed="1" _id="219" _ref_sofa="3" begin="69" end="72" tokenNumber="16" partOfSpeech="CD" numType="1"/>
<org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation _indexed="1" _id="248" _ref_sofa="3" begin="69" end="75" id="2" typeID="0" segmentID="SIMPLE_SEGMENT" discoveryTechnique="0" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="266" _ref_sofa="3" begin="2" end="13" chunkType="NP"/>
<org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="276" _ref_sofa="3" begin="23" end="44" chunkType="NP"/>
@@ -39,14 +39,14 @@
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="310" _ref_sofa="3" begin="23" end="44"/>
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="318" _ref_sofa="3" begin="47" end="58"/>
<org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="322" _ref_sofa="3" begin="61" end="75"/>
- <org.apache.ctakes.typesystem.type.textsem.MedicationMention _indexed="1" _id="340" _ref_sofa="3" begin="61" end="68" id="1" _ref_ontologyConceptArr="330" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="383" _ref_sofa="3" begin="23" end="27" id="0" _ref_ontologyConceptArr="380" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
- <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="370" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
- <uima.cas.FSArray _id="380" size="1">
- <i>370</i>
+ <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="343" _ref_sofa="3" begin="23" end="27" id="0" _ref_ontologyConceptArr="340" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.MedicationMention _indexed="1" _id="383" _ref_sofa="3" begin="61" end="68" id="1" _ref_ontologyConceptArr="373" typeID="1" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="376" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM" score="0.0" disambiguated="false"/>
+ <uima.cas.FSArray _id="373" size="1">
+ <i>376</i>
</uima.cas.FSArray>
- <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="333" codingScheme="RXNORM" code="C6666666" oid="C6666666#RXNORM" score="0.0" disambiguated="false"/>
- <uima.cas.FSArray _id="330" size="1">
- <i>333</i>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="330" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
+ <uima.cas.FSArray _id="340" size="1">
+ <i>330</i>
</uima.cas.FSArray>
</CAS>