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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:43:22 UTC
[18/51] [partial] incubator-taverna-engine git commit: temporarily
empty repository
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestTavernaProvModel.java
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diff --git a/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestTavernaProvModel.java b/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestTavernaProvModel.java
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-package org.purl.wf4ever.provtaverna.owl;
-
-import static org.junit.Assert.assertEquals;
-
-import java.net.URI;
-import java.util.UUID;
-
-import org.apache.jena.riot.Lang;
-import org.apache.jena.riot.RDFDataMgr;
-import org.apache.jena.riot.RDFFormat;
-import org.apache.jena.riot.WriterGraphRIOT;
-import org.apache.jena.riot.system.PrefixMapFactory;
-import org.apache.jena.riot.system.RiotLib;
-import org.junit.Before;
-import org.junit.Test;
-
-import com.hp.hpl.jena.ontology.Individual;
-import com.hp.hpl.jena.ontology.OntModel;
-import com.hp.hpl.jena.sparql.util.Context;
-
-public class TestTavernaProvModel {
-
- private TavernaProvModel provModel;
-
- @Before
- public void tavernaProvModel() {
- provModel = new TavernaProvModel();
- }
-
- @Test
- public void dummy() throws Exception {
- Individual bundle = provModel.createBundle(uuid());
- assertEquals("Bundle", bundle.getOntClass().getLocalName());
-
- }
-
- private URI uuid() {
- return URI.create("urn:uuid:" + UUID.randomUUID());
- }
-
-
- @Test
- public void createEntity() throws Exception {
- Individual ent = provModel.createEntity(URI
- .create("http://example.com/fred#test"));
- provModel.createEntity(URI.create("http://example.com/test"));
- OntModel model = provModel.model;
- model.write(System.out, "TURTLE", "http://example.com/fred");
- model.write(System.out, "RDF/XML", "http://example.com/fred");
-
- WriterGraphRIOT writer = RDFDataMgr.createGraphWriter(RDFFormat.TURTLE_BLOCKS);
- writer.write(System.out, model.getBaseModel().getGraph(), RiotLib.prefixMap(model.getGraph()), "http://example.com/fred", new Context());
-
- }
-}
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestWfprovModel.java
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diff --git a/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestWfprovModel.java b/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestWfprovModel.java
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--- a/taverna-prov-owl-bindings/src/test/java/org/purl/wf4ever/provtaverna/owl/TestWfprovModel.java
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-package org.purl.wf4ever.provtaverna.owl;
-import static org.junit.Assert.assertEquals;
-
-import java.net.URI;
-import java.util.UUID;
-
-import org.junit.Test;
-
-import com.hp.hpl.jena.ontology.Individual;
-
-
-public class TestWfprovModel {
- @Test
- public void dummy() throws Exception {
- ProvModel provModel = new WfprovModel();
- Individual bundle = provModel.createBundle(uuid());
- assertEquals("Bundle", bundle.getOntClass().getLocalName());
-
- }
-
- private URI uuid() {
- return URI.create("urn:uuid:" + UUID.randomUUID());
- }
-}
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/test/resources/handmade.ttl
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diff --git a/taverna-prov-owl-bindings/src/test/resources/handmade.ttl b/taverna-prov-owl-bindings/src/test/resources/handmade.ttl
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-@prefix owl: <http://www.w3.org/2002/07/owl#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix prov: <http://www.w3.org/ns/prov#> .
-@prefix wfprov: <http://purl.org/wf4ever/wfprov#> .
-@prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
-@prefix tavernaprov: <http://ns.taverna.org.uk/2012/tavernaprov/> .
-@prefix doap: <http://usefulinc.com/ns/doap#> .
-@prefix cnt: <http://www.w3.org/2011/content#> .
-@prefix dcterms: <http://purl.org/dc/terms/> .
-@prefix scufl2: <http://ns.taverna.org.uk/2010/scufl2#> .
-
-<> rdfs:label "Handmade example of 'ideal' tavernaprov output"@en ;
- rdfs:comment """This is a hand written attempt of how Taverna could output
-workflow provenance of the 'Hello Anyone' workflow.
-
-Note that this example has been created to help shape the tavernaprov and
-wfprov ontologies, and therefore might not be in compliance with their current
-version.
-
-Note that for brevity, the provenance shown here might not be the complete
-trace, for instance some workflow processors are not shown. """@en ;
- prov:wasAttributedTo <http://soiland-reyes.com/stian/#me> .
-
-
-# Normally, this PROV bundle would have this metaprovenance:
-
-<> a prov:Bundle, prov:Entity ;
- prov:wasGeneratedBy :taverna-prov-export .
-
-:taverna-prov-export a prov:Activity, tavernaprov:ProvExport;
- rdfs:label "taverna-prov export of workflow run provenance";
- # Might have been performed days later than the run!
- prov:startedAtTime "2012-09-14T14:49:59.498+01:00"^^xsd:dateTime;
- prov:endedAtTime "2012-09-14T14:50:41.216+01:00"^^xsd:dateTime;
- # But was informed by the run activity
- prov:wasInformedBy <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/> .
-
-
-# 'Trace' of workflow definition included - mainly in wfdesc and prov:Plan/prov:Role terms.
-#
-# For a complete abstract workflow definition, see the separate wfdesc
-# translation from scufl2. Only minimal typing from scufl2 has been exposed
-# here, hence the use of dcterms:hasPart rather than scufl2:child.
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/> a scufl2:WorkflowBundle ;
- dcterms:hasPart <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> .
-# The http://ns.taverna.org.uk/2010/workflowBundle/* and
-# http://ns.taverna.org.uk/2011/run/* URIs in this document point to
-# non-information resources - attempts to
-# retrieve them will give either a 404 Not Found
-# or a 303 See Other redirection to a 'guessing' service which can only give
-# information on a similar granularity as below based on components of the
-# structured URI. The reason for this is that the workflow engine is not in
-# control of where the workflow definition or exported provenance is stored and
-# published, and Taverna don't enforce any centralized registry of these.
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> a scufl2:Workflow, wfdesc:Workflow, prov:Plan ;
- rdfs:label "Workflow Hello_Anyone";
- wfdesc:hasSubProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- dcterms:hasPart <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> a scufl2:Processor, wfdesc:Process, prov:Plan ;
- rdfs:label "Processor hello in workflow Hello_Anyone";
- wfdesc:hasInput <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> ;
- dcterms:hasPart <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> a wfdesc:Input, wfdesc:Parameter, prov:Role ;
- rdfs:label "Input name in workflow Hello_Anyone" .
-#
-
-
-# A loose description of the workflow engine. The validity of this
-# engine across multiple workflow runs is not clear, hence it does not
-# have a proper URI. We do however know some informaton about
-# the software version, which we should include
-:tavernaEngine a tavernaprov:TavernaEngine, wfprov:WorkflowEngine, prov:Agent ;
- wfprov:software <http://ns.taverna.org.uk/2012/releases/2.4.0/> ;
- # Can't export this now - operator information not currently recorded by Taverna
- #wfprov:operator [ a prov:Person; foaf:name "Fred" ]
-.
-<http://ns.taverna.org.uk/2012/releases/2.4.0/> a doap:Version ;
- doap:revision "2.4.0" ;
- doap:created "2012-04-19"^^xsd:dateTime ;
- doap:name "Taverna Workbench"@en .
-#
-
-# Description of workflow run
-<http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/> a wfprov:WorkflowRun, prov:Activity ;
- rdfs:label "Workflow run of Hello_Anyone"@en ;
- wfprov:wasEnactedBy :tavernaEngine ;
- prov:wasAssociatedWith :tavernaEngine ;
- prov:qualifiedAssociation [
- a wfprov:ExecutionOfWorkflow, prov:Associaton ;
- prov:agent :tavernaEngine ;
- wfprov:describedByWorkflow <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> ;
- prov:hadPlan <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> ;
- ] ;
- prov:startedAtTime "2012-09-12T14:49:45.750+01:00"^^xsd:dateTime;
- prov:endedAtTime "2012-09-12T14:49:48.829+01:00"^^xsd:dateTime;
- prov:used <http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/2be8d75a-4545-4539-9364-5cfc41ae944a> ;
- # Deprecated non-prov wfprov style
- #wfprov:usedInput <http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/2be8d75a-4545-4539-9364-5cfc41ae944a> ;
- prov:qualifiedUsage [
- a wfprov:InputValue, prov:Usage ;
- wfprov:inputValue <http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/2be8d75a-4545-4539-9364-5cfc41ae944a> ;
- prov:entity <http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/2be8d75a-4545-4539-9364-5cfc41ae944a> ;
-
- wfprov:asParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> ;
- prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> ;
- ] .
-
-# Description of the used input
-<http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/2be8d75a-4545-4539-9364-5cfc41ae944a> a wfprov:Artifact, prov:Entity ;
- # The file that has the content
- tavernaprov:content <intermediates/2be8d75a-4545-4539-9364-5cfc41ae944a.txt> ;
- #wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> .
- .
-
-# Description of actual content, small values even included here with cnt:chars
-<intermediates/2be8d75a-4545-4539-9364-5cfc41ae944a.txt> a tavernaprov:Content, cnt:ContentAsText ;
- tavernaprov:sha1 "943a702d06f34599aee1f8da8ef9f7296031d699"^^xsd:hexBinary;
- tavernaprov:byteCount 13;
- cnt:chars "Hello, world!";
- cnt:characterEncoding "UTF-8" .
-
-
-# Description of process executions
-<http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/process/0347c41e-5998-4015-bdb7-cdd125c14acf/> a wfprov:ProcessRun, prov:Activity ;
- rdfs:label "Processor execution hello (facade3:Hello_Anyone:hello)" ;
- prov:startedAtTime "2012-09-12T14:49:47.366+01:00"^^xsd:dateTime ;
- prov:endedAtTime "2012-09-12T14:49:47.513+01:00"^^xsd:dateTime ;
-
- wfprov:wasEnactedby :tavernaEngine ;
- prov:wasAssociatedWith :tavernaEngine ;
- prov:qualifiedAssociation [
- a wfprov:ExecutionOfProcess, prov:Association;
- prov:agent :tavernaEngine ;
- wfprov:describedByProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- prov:hadPlan <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/>
- ] ;
- wfprov:wasPartOfWorkflowRun <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/> ;
- dcterms:partOf <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/> .
-
-<http://ns.taverna.org.uk/2011/data/d3f40bc4-0d96-4c6b-9562-5d27e0c66d7e/ref/f644d282-dd2d-4cce-8eb2-8429f4cb4c3a> a wfprov:Artifact, prov:Entity ;
- tavernaprov:content <intermediates/f6/f644d282-dd2d-4cce-8eb2-8429f4cb4c3a.txt>;
- #wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value>;
- #wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/process/0347c41e-5998-4015-bdb7-cdd125c14acf/> ;
- prov:wasGeneratedBy <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/process/0347c41e-5998-4015-bdb7-cdd125c14acf/> ;
- prov:qualifiedGeneration [
- a wfprov:OutputValue, prov:Generation;
- wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/process/0347c41e-5998-4015-bdb7-cdd125c14acf/> ;
- prov:activity <http://ns.taverna.org.uk/2011/run/223da554-8b08-4ccd-9247-11c9cedb31de/process/0347c41e-5998-4015-bdb7-cdd125c14acf/>;
-
- wfprov:asParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value>;
- prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value>
- ] .
-
-# .. Remaining processors and entities not shown
-
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/README.md
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diff --git a/taverna-prov/README.md b/taverna-prov/README.md
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-# Taverna PROV support
-
-[](https://travis-ci.org/taverna/taverna-prov)
-
-This is a plugin for the [Taverna](http://www.taverna.org.uk/) Workbench
-and Taverna Command Line which allows export of the provenance of a
-workflow run according to the [W3C PROV-O
-standard](http://www.w3.org/TR/prov-o/).
-
-
-## Source code and license
-This plugin is distributed under the [GNU Lesser General Public License
-2.1](http://www.gnu.org/licenses/lgpl-2.1.html) (LGPL). The source code
-for this plugin is available at https://github.com/taverna/taverna-prov
-
-
-## Installation for Taverna workbench
-Installation of an released version of this plugin does not require
-compilation, but uses Taverna's plugin mechanism.
-
-You need:
-* [Taverna Workbench 2.5](http://www.taverna.org.uk/download/workbench/2-5/)
-* Java 1.7 (now comes included with Taverna)
-* Internet connectivity
-
-Taverna-PROV is included in Taverna 2.5 and later.
-
-To install any updates to the Taverna-PROV plugin:
-
-1. Start Taverna workbench
-
-2. In the menu, click **Advanced** -> **Updates and plugins**
-
-3. If Taverna does not say "An update is available" , click
- **Find updates**
-
-4. For **Taverna-PROV databundle**, click **Update** if shown.
-
-5. Click **Close**
-
-6. Exit and Restart Taverna workbench
-
-
-## Usage in the Taverna Workbench
-
-In order for PROV export to be possible from the Taverna Workbench,
-click **Preferences** from the **File** or **Taverna** menu, then go to the
-[Preferences for Data and Provenance](http://dev.mygrid.org.uk/wiki/display24/taverna/Data+and+provenance+preferences).
-Ensure that **Provenance capture** is enabled (this is the default in 2.5).
-
-If you would like Taverna to keep the provenance data between runs
-of the workbench (in order to export at a later time), then you need to
-also untick to *disable* **In memory storage**; note however that this may slow
-down executions of some workflows.
-
-Open and run a workflow to export provenance for. As a quick example,
-try the very simple
-[helloanyone.t2flow](http://www.myexperiment.org/workflows/2649/download/hello_anyone_895936.t2flow)
-from [myExperiment](http://www.myexperiment.org/workflows/2649)
-(included in the `example/` folder of this source code).
-
-To save a Taverna-PROV databundle containing the workflow run
-provenance:
-
-1. Click **Results** perspective
-2. Run a workflow, or select an existing run on the left
-3. Click **Show workflow results** button (in case you are viewing intermediates)
-4. Click **Save all values**
-5. Ensure all ports are ticked
-6. Click **Save Provenance bundle**
-7. Browse and type the name of the bundle
-8. Click **OK**
-9. The provenance and results values is saved to the bundle with the
- extension `.bundle.zip`
-10. Provide the data bundle to a service that can understand it, such
- as http://alpha2.myexperiment.org/ or http://sandbox.wf4ever-project.org/portal
-11. You may also open the bundle in your operating system as it is
- a ZIP file which contains workflow inputs, outputs, provenance and a
- copy of the workflow.
-
-
-
-### Usage on command line
-
-The Taverna documentation has general information about [how to use the
-Taverna Command line
-tool](http://dev.mygrid.org.uk/wiki/display/taverna/Command+Line+Tool).
-
-The Taverna-PROV command line does not support all the output options of
-the regular Taverna command line, output has to be saved using
-`-outputdir`. The databundle will be saved in a filename which
-corresponds to the output directory, but with the extension
-`.bundle.zip`.
-
-To enable PROV export for the workflow run, add the parameter
-`-provenance`, which requires the parameter `-embedded` or
-`-clientserver`.
-
-Note: `-embedded` allows only one concurrent execution at a time due to
-database locking. To support multiple concurrent runs, start
-`executeworkflow -startdb` separately to start the database server, and
-use `executeworkflow -provenance -clientserver` for the workflow
-executions.
-
-
-Example:
-```
-stain@biggie-mint ~/src/taverna-prov/example $ executeworkflow -embedded -provbundle helloanyone.bundle.zip -inputvalue name fred helloanyone.t2flow
-Provenance bundle zip will be saved to: /home/stain/src/taverna-prov/example/helloanyone.bundle.zip
-
-stain@biggie-mint ~/src/taverna-prov/example $ mkdir helloanyone.bundle ; cd helloanyone.bundle
-stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle $ unzip ../helloanyone.bundle.zip
-Archive: ../helloanyone.bundle.zip
- extracting: mimetype
- creating: inputs/
- inflating: inputs/name.txt
- creating: outputs/
- inflating: outputs/greeting.txt
- creating: intermediates/
- creating: intermediates/3a/
- inflating: intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt
- inflating: workflowrun.prov.ttl
- inflating: workflow.wfbundle
- creating: .ro/
- creating: .ro/annotations/
- inflating: .ro/annotations/workflow.wfdesc.ttl
- inflating: .ro/annotations/a2f03983-8836-4c36-bfb2-d713d9a1928f.ttl
- inflating: .ro/manifest.json
-```
-
-
-## Structure of exported provenance
-
-The `.bundle.zip` file is a [RO bundle](https://w3id.org/bundle),
-which species a structured ZIP file with a manifest
-(`.ro/manifest.json`). You can explore the bundle by unzipping it or
-browse it with a program like [7-Zip](http://7-zip.org/).
-
-This source includes an [example
-bundle](example/helloanyone.bundle.zip) and [unzipped
-bundle](example/helloanyone.bundle/) as a folder. This data bundle
-has been saved after running
-a simple [hello world workflow](example/helloanyone.t2flow).
-
-The remaining text of this section describes the content of the RO
-bundle, as if it was unpacked to a folder. Note that many programming
-frameworks include support for working with ZIP files, and so complete
-unpacking might not be necessary for your application. For Java, the
-[Data bundle API](https://github.com/taverna/databundle) gives a
-programmating way to inspect and generate data bundles.
-
-
-### Inputs and outputs
-
-The folders `inputs/` and `outputs/` contain files and folders
-corresponding to the input and output values of the executed
-workflow. Ports with multiple values are stored as a folder with numbered
-outputs, starting from `0`. Values representing errors have extension
-`.err`, other values have an extension guessed by inspecting the value
-structure, e.g. `.png`. External references have the extension `.url` -
-these files can often be opened as "Internet shortcut" or similar,
-depending on your operating system.
-
-Example listing:
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>ls
- inputs intermediates mimetype outputs workflow.wfbundle workflowrun.prov.ttl
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>ls outputs
- greeting.txt
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>cat outputs/greeting.txt
- Hello, John Doe
-
-### Workflow run provenance
-
-The file `workflowrun.prov.ttl` contains the
-[PROV-O](http://www.w3.org/TR/prov-o/) export of the workflow run
-provenance (including nested workflows) in [RDF Turtle
-format](http://www.w3.org/TR/turtle/).
-
-This log details every intermediate processor invocation in the workflow
-execution, and relates them to inputs, outputs and intermediate values.
-
-Example listing:
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>cat workflowrun.prov.ttl | head -n 40 | tail -n 8
-
- <#taverna-prov-export>
- rdf:type prov:Activity ;
- prov:startedAtTime "2013-11-22T14:01:02.436Z"^^xsd:dateTime ;
- prov:qualifiedCommunication _:b1 ;
- prov:endedAtTime "2013-11-22T14:01:03.223Z"^^xsd:dateTime ;
- rdfs:label "taverna-prov export of workflow run provenance"@en ;
- prov:wasInformedBy <http://ns.taverna.org.uk/2011/run/385c794c-ba11-4007-a5b5-502ba8d14263/> ;
-
-See the [provenance graph](example/helloanyone.bundle/workflowrun.prov.ttl) for a complete example. The provenance uses the vocabularies [PROV-O](http://www.w3.org/TR/prov-o/), [wfprov](https://w3id.org/ro#wfprov) and [tavernaprov](http://ns.taverna.org.uk/2012/tavernaprov/).
-
-#### Intermediate values
-
-
-Intermediate values are stored in the `intermediates/` folder and
-referenced from `workflowrun.prov.ttl`
-
-Intermediate value from the [example provenance](example/helloanyone.bundle/workflowrun.prov.ttl):
-
- <http://ns.taverna.org.uk/2011/data/385c794c-ba11-4007-a5b5-502ba8d14263/ref/d588f6ab-122e-4788-ab12-8b6b66a67354>
- tavernaprov:content <intermediates/d5/d588f6ab-122e-4788-ab12-8b6b66a67354.txt> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string1> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value> ;
- wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/385c794c-ba11-4007-a5b5-502ba8d14263/process/bbaedc02-896f-491e-88bc-8dd350fcc73b/> .
-
-Here we see that the bundle file `intermediates/d5/d588f6ab-122e-4788-ab12-8b6b66a67354.txt` contains the output from the "hello" processor, which was also the input to the "Concatenate_two_strings" processor. Details about processor, ports and parameters can be found in the [workflow definition](#workflow-definition).
-
-Example listing:
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>ls intermediates/d5
- d588f6ab-122e-4788-ab12-8b6b66a67354.txt
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>cat intermediates/d5/d58*
- Hello,
-
-Note that "small" textual values are also included as `cnt:chars` in the graph, while the referenced intermediate file within the workflow bundle is always present.
-
- <intermediates/d5/d588f6ab-122e-4788-ab12-8b6b66a67354.txt>
- rdf:type cnt:ContentAsText ;
- cnt:characterEncoding "UTF-8"^^xsd:string ;
- cnt:chars "Hello, "^^xsd:string ;
- tavernaprov:byteCount "7"^^xsd:long ;
- tavernaprov:sha512 "cf83e1357eefb8bdf1542850d66d8007d620e4050b5715dc83f4a921d36ce9ce47d0d13c5d85f2b0ff8318d2877eec2f63b931bd47417a81a538327af927da3e"^^xsd:string ;
- tavernaprov:sha1 "f52ab57fa51dfa714505294444463ae5a009ae34"^^xsd:string ;
- rdf:type tavernaprov:Content .
-
-
-### Workflow definition
-
-The file `workflow.wfbundle` is a copy of the executed workflow in
-[SCUFL2 workflow
-bundle](http://dev.mygrid.org.uk/wiki/display/developer/Taverna+Workflow+Bundle)
-format. This is the format which will be used by
-The file `workflow.wfbundle` contains the executed workflow in [Taverna
-3](http://www.taverna.org.uk/developers/work-in-progress/taverna-3/).
-
-You can use the [SCUFL2
-API](http://dev.mygrid.org.uk/wiki/display/developer/SCUFL2+API) to inspect the
-workflow definition in detail, or unzip the workflow bundle to access the
-complete workflow definition files as RDF/XML.
-
-#### Workflow structure
-
-Usually it is sufficient to inspect the simpler file
-`.ro/annotations/workflow.wfdesc.ttl`, which contains the abstract structure
-(but not all the implementation details) of the executed
-workflow, in [RDF Turtle](http://www.w3.org/TR/turtle/)
-according to the [wfdesc ontology](https://w3id.org/ro/#wfdesc).
-
- c:\Users\stain\workspace\taverna-prov\example\helloanyone.bundle>cat .ro/annotations/workflow.wfdesc.ttl | head -n 20
- @base <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> .
- @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
- @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
- @prefix owl: <http://www.w3.org/2002/07/owl#> .
- @prefix prov: <http://www.w3.org/ns/prov#> .
- @prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
- @prefix wf4ever: <http://purl.org/wf4ever/wf4ever#> .
- @prefix roterms: <http://purl.org/wf4ever/roterms#> .
- @prefix dc: <http://purl.org/dc/elements/1.1/> .
- @prefix dcterms: <http://purl.org/dc/terms/> .
- @prefix comp: <http://purl.org/DP/components#> .
- @prefix dep: <http://scape.keep.pt/vocab/dependencies#> .
- @prefix biocat: <http://biocatalogue.org/attribute/> .
- @prefix : <#> .
-
- <processor/Concatenate_two_strings/> a wfdesc:Process , wfdesc:Description , owl:Thing , wf4ever:BeanshellScript ;
- rdfs:label "Concatenate_two_strings" ;
- wfdesc:hasInput <processor/Concatenate_two_strings/in/string1> , <processor/Concatenate_two_strings/in/string2> ;
- wfdesc:hasOutput <processor/Concatenate_two_strings/out/output> ;
- wf4ever:script "output = string1 + string2;" .
-
-#### Original t2flow
-
-If the workflow was executed in Taverna 2 (which is the case when using this plugin),
-then the unzipped `workflow.wfbundle` will contain a copy of the original `.t2flow` within
-its `history` folder:
-
-
- stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle $ mkdir workflow ; cd workflow ; unzip ../workflow.wfbundle
- Archive: ../workflow.wfbundle
- extracting: mimetype
- creating: META-INF/
- inflating: META-INF/manifest.xml
- creating: annotation/
- inflating: annotation/705d1f32-ea94-4a5b-b8fb-1cc1a5023427.ttl
- inflating: annotation/0f1641bd-49ef-41bd-9e4b-e20cc2bf37bb.ttl
- inflating: annotation/d007623d-cd94-4888-a583-e8d97953a159.ttl
- inflating: annotation/e9eb11fa-fc63-4ddc-92ca-ec6921af1667.ttl
- inflating: annotation/c5e91716-2f9f-4e7c-a692-8f58dba265e3.ttl
- creating: history/
- inflating: history/01348671-5aaa-4cc2-84cc-477329b70b0d.t2flow
- creating: workflow/
- inflating: workflow/Hello_Anyone.rdf
- creating: profile/
- creating: profile/unspecified/
- creating: profile/unspecified/configuration/
- inflating: profile/unspecified/configuration/Concatenate_two_strings.json
- inflating: profile/unspecified/configuration/Concatenate_two_strings-proc.json
- inflating: profile/unspecified/configuration/hello.json
- inflating: profile/unspecified/configuration/hello-proc.json
- inflating: profile/unspecified.rdf
- inflating: workflowBundle.rdf
- inflating: META-INF/container.xml
-
- stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle/workflow $ head history/01348671-5aaa-4cc2-84cc-477329b70b0d.t2flow
- <workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="unspecified"><dataflow id="01348671-5aaa-4cc2-84cc-477329b70b0d" role="top"><name>Hello_Anyone</name><inputPorts><port><name>name</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
-
-The UUID in the t2flow filename (`01348671-5aaa-4cc2-84cc-477329b70b0d` above)
-should match the executed wfbundle URI as seen in the provenance
-
- http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/
-
-_Not yet implemented: a specific link to the `history/*.t2flow` file within the wfbundle._
-
-
-## Querying provenance
-
-Example [SPARQL query](http://www.w3.org/TR/sparql11-query/) from [test.sparql](example/test.sparql):
-
-```sparql
-PREFIX prov: <http://www.w3.org/ns/prov#>
-PREFIX wfdesc: <http://purl.org/wf4ever/wfdesc#>
-PREFIX wfprov: <http://purl.org/wf4ever/wfprov#>
-PREFIX tavernaprov: <http://ns.taverna.org.uk/2012/tavernaprov/>
-PREFIX cnt: <http://www.w3.org/2011/content#>
-PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
-PREFIX wf4ever: <http://purl.org/wf4ever/wf4ever#>
-
-
-SELECT DISTINCT ?paramName ?name ?value ?ended ?script
-WHERE {
- ?greeting tavernaprov:content <outputs/greeting.txt> .
- ?greeting prov:wasGeneratedBy ?concatenate .
- ?concatenate prov:endedAtTime ?ended ;
- wfprov:wasPartOfWorkflowRun ?run ;
- wfprov:describedByProcess ?plan .
- ?concatenate wfprov:usedInput ?input .
- ?input tavernaprov:content ?name .
- OPTIONAL { ?name cnt:chars ?value } .
- OPTIONAL { ?plan wf4ever:script ?script } .
- ?input wfprov:describedByParameter ?param .
- ?plan wfdesc:hasInput ?param .
- OPTIONAL { ?param rdfs:label ?paramName } .
-}
-```
-
-
-This query will be starting with the data `?greeting` which content is
-represented by the existing output file
-[outputs/greeting.txt](example/helloanyone.bundle/outputs/greeting.txt), and
-the remaining query tries to find which input or upstream values it has
-effectively been derived from.
-
-To do this, we find the `?concatenate` process run that generated
-the greeting, and ask when it `?ended`. We also look up its `?plan`,
-which should match the [process
-identifier](example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl#L16)
-within the workflow definition.
-
-We then look at the `?input`s used by the `?concatenate` process run (this
-should give two matches as the "Concatenate string" processor takes two
-arguments). We look up their `?content` (a file witin this bundle), in addition
-to its textual `?value` (optionally, as this is only included in the graph for
-small non-binary content).
-
-Now we do a lookup of the
-[`?script`](example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl#L20)
-behind the defined `?plan` - this is optional because not all processors have
-scripts (it might be a web service).
-This information is extracted from the
-[.ro/annotations/workflow.wfdesc.ttl](example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.)
-file which must also be parsed before querying.
-
-Lastly we look up the pararameters which describes `?input`, filtered by
-the ones bound to the processor `?plan` (thus avoiding the workflow inputs
-"name"), and include their `?paramName` - each result should therefore show the
-input port name and value.
-
-
-Query using [rdfproc](http://librdf.org/utils/rdfproc.html) (`apt-get install redland-utils`):
-
- stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle $ rdfproc test parse workflowrun.prov.ttl turtle
- rdfproc: Parsing URI file:///home/stain/src/taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl with turtle parser
-
- stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle $ rdfproc test parse .ro/annotations/workflow.wfdesc.ttl turtle
- rdfproc: Parsing URI file:///home/stain/src/taverna-prov/example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl with turtle parser
-
- stain@biggie-mint ~/src/taverna-prov/example/helloanyone.bundle $ rdfproc test2 query sparql - "$(cat ../test.sparql)"
- rdfproc: Warning - URI file:///home/stain/src/taverna-prov/example/helloanyone.bundle/:1: Variable run was bound but is unused in the query
- rdfproc: Query returned bindings results:
- result: [, paramName="string2", name=<file:///home/stain/src/taverna-prov/example/helloanyone.bundle/inputs/name.txt>, value="fred"^^<http://www.w3.org/2001/XMLSchema#string>, ended="2014-05-28T11:49:43.711+01:00"^^<http://www.w3.org/2001/XMLSchema#dateTime>, script="output = string1 + string2;"]
- result: [, paramName="string1", name=<file:///home/stain/src/taverna-prov/example/helloanyone.bundle/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt>, value="Hello, "^^<http://www.w3.org/2001/XMLSchema#string>, ended="2014-05-28T11:49:43.711+01:00"^^<http://www.w3.org/2001/XMLSchema#dateTime>, script="output = string1 + string2;"]
- rdfproc: Query returned 2 results
-
-
-This shows that the `string2` input port was bound to value `"fred"` (content of `inputs/name.txt`) in the process run that generated `outputs/greeting.txt`. Next, `string` was bound to `"Hello, "` (content of `intermediates/3a/3a82..62b.txt`). The executed script was `output = string1 + string2`.
-
-
-
-## Building
-Note - you do not normally need to build from source code; unless you
-are modifying the source code, the "Taverna Prov" plugin included
-in Taverna's default plugins is the preferred way of using Taverna-PROV.
-
-
-You need:
-* Java JDK 1.7 or newer (tested with OpenJDK 1.7.0\_03)
- * Note: Do not use the OpenJDK 1.6 (default in Ubuntu), as this is
- buggy with GUI and File operations, both used by the Taverna Workbench.
-* Maven 2.2 or newer (Tested with [Maven 3.0.4](http://maven.apache.org/download.html))
-
-To compile, run `mvn clean install`
-
-On first run this will download various open-source third-party
-libraries from Maven repositories, including required modules of Taverna 2.4.
-These JARs, and the compiled JARs from this source code, are
-installed into `$HOME/.m2/repository/` [by
-default](http://maven.apache.org/settings.html#Quick_Overview).
-Depending on your network connection, this first run might take about 5
-minutes to complete.
-
-Example compilation:
-
- stain@vmint:~/src/taverna-prov$ mvn clean install
- [INFO] Scanning for projects...
- [INFO] ------------------------------------------------------------------------
- [INFO] Reactor Build Order:
- [INFO]
- [INFO] Taverna PROV
- [INFO] Taverna PROV W3 Provenance ontology Elmo bindings
- [INFO] Taverna PROV export
- [INFO] Taverna PROV activity UI bindings
- [INFO] Taverna PROV plugin
- [INFO] PROV Taverna command line
- [INFO]
- [INFO] ------------------------------------------------------------------------
- [INFO] Building Taverna PROV 2.0.0-SNAPSHOT
- [INFO] ------------------------------------------------------------------------
- (..)
- Downloading: http://www.mygrid.org.uk/maven/repository/net/sf/taverna/t2/taverna-workbench/workbench-dev/2.5.0/workbench-dev-2.5.0.pom
- Downloaded: http://www.mygrid.org.uk/maven/repository/net/sf/taverna/t2/taverna-workbench/workbench-dev/2.5.0/workbench-dev-2.5.0.pom (3 KB at 5.4 KB/sec)
- (..)
- [INFO] Installing /home/stain/src/taverna-prov/prov-taverna-cmdline/target/prov-taverna-cmdline-2.0.0-SNAPSHOT-tests.jar to /home/stain/.m2/repository/org/purl/wf4ever/provtaverna/prov-taverna-cmdline/2.0.0-SNAPSHOT/prov-taverna-cmdline-2.0.0-SNAPSHOT-tests.jar
- [INFO] ------------------------------------------------------------------------
- [INFO] Reactor Summary:
- [INFO]
- [INFO] Taverna PROV ...................................... SUCCESS [4.109s]
- [INFO] Taverna PROV W3 Provenance ontology Elmo bindings . SUCCESS [1.55.270s]
- [INFO] Taverna PROV export ............................... SUCCESS [45.873s]
- [INFO] Taverna PROV activity UI bindings ................. SUCCESS [1.56.572s]
- [INFO] Taverna PROV plugin ............................... SUCCESS [15.028s]
- [INFO] PROV Taverna command line ......................... SUCCESS [1:12.093s]
- [INFO] ------------------------------------------------------------------------
- [INFO] BUILD SUCCESS
- [INFO] ------------------------------------------------------------------------
- [INFO] Total time: 5:54.000s
- [INFO] Finished at: Wed Jul 18 12:08:13 BST 2012
- [INFO] Final Memory: 72M/274M
- [INFO] ------------------------------------------------------------------------
-
-
-
-
-Note that to work with Taverna 2's plugin system, the build is specific
-for a particular Taverna version (but works for any edition). To build this
-plugin for a different version of Taverna, modify the `<parent>` section of
-`pom.xml` to match the Taverna release, e.g. `<version>2.4.0</version>`.
-
-In order for Taverna to find your install of the plugin rather than
-download from the official plugin site, you will need to manually edit
-`plugins/plugins.xml` of the [Taverna home
-directory](http://dev.mygrid.org.uk/wiki/display/tav250/Taverna+home+directory)
-(run Taverna once to create the file) to include this section right
-before the final `</plugins:plugins>`. The
-
-Note that you will get two copies of the "Save provenance" button, one for the
-official version included from `workbench-plugin`, and one for the one you built.
-
-
-```xml
- <plugin>
- <provider>org.purl.wf4ever</provider>
- <identifier>org.purl.wf4ever.provtaverna.prov-taverna-plugin</identifier>
- <version>2.0.0-SNAPSHOT</version>
- <name>Taverna PROV plugin</name>
- <description/>
- <enabled>true</enabled>
- <repositories>
- <repository>file:///home/johndoe/.m2/repository/</repository>
- <repository>http://www.mygrid.org.uk/maven/repository/</repository>
- <repository>http://uk.maven.org/maven2/</repository>
- <repository>http://repo.aduna-software.org/maven2/releases/</repository>
- <repository>http://repo.aduna-software.org/maven2/snapshots/</repository>
- <repository>http://repo.aduna-software.org/maven2/ext/</repository>
- <repository>http://repository.aduna-software.org/maven2/</repository>
- <repository>http://repository.aduna-software.org/maven2-snapshots/</repository>
- <repository>http://people.apache.org/repo/m2-snapshot-repository/</repository>
- <repository>http://nexus.codehaus.org/snapshots/</repository>
- <repository>http://repository.jboss.org/maven2/</repository>
- </repositories>
- <profile>
- <dependency>
- <groupId>org.purl.wf4ever.provtaverna</groupId>
- <artifactId>prov-taverna-ui</artifactId>
- <version>2.0.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>4.8.2</version>
- </dependency>
- </profile>
- <compatibility>
- <application>
- <version>2.5.0</version>
- </application>
- </compatibility>
- </plugin>
-```
-
-1. Modify the line:
- ```xml
- <repository>file:///home/johndoe/.m2/repository/</repository>
- ```
-
- to match your $HOME/.m2/repository. On Windows this path should look like:
-
- ```xml
- <repository>file:///C:/Users/johndoe/.m2/repository/</repository>
- ```
-
-2. Take care that the `<version>` of the `<plugin>` and `prov-taverna-ui` matches
- the `<version>` specified in the `pom.xml` of this source code (typically `1.x-SNAPSHOT`).
-
-3. If you are building for a different Taverna, check that the `<application><version>`
- matches the Taverna version (compare with the existing plugins)
-
-4. Start Taverna Workbench.
-
-You only need to do this plugin installation once - if you later
-recompile the source code without changing the version numbers, next
-start of Taverna will use the newer JARs from `mvn clean install` as
-Taverna will prefer accessing `$HOME/.m2/repository`. You might however need to delete
-the `repository/org/purl/wf4ever` folder of the
-[Taverna home directory](http://dev.mygrid.org.uk/wiki/display/tav250/Taverna+home+directory)
-if Taverna has downloaded the SNAPSHOT versions from the myGrid repository
-instead (for instance because you used the wrong `<repository>` path or
-did not update `<version>`).
-
-To make the plugin installation system-side (ie. multiple UNIX users or
-to make a customized Taverna distribution), copy `plugins/`
-and `repository` with overwrite onto the Taverna installation directory.
-(See _Installation for Taverna Command Line_ above)
-
-
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle.zip
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-@prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/>
- wfdesc:hasWorkflowDefinition
- <../../workflow.wfbundle> .
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diff --git a/taverna-prov/example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl b/taverna-prov/example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl
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index a0d1a4b..0000000
--- a/taverna-prov/example/helloanyone.bundle/.ro/annotations/workflow.wfdesc.ttl
+++ /dev/null
@@ -1,66 +0,0 @@
-@base <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-@prefix owl: <http://www.w3.org/2002/07/owl#> .
-@prefix prov: <http://www.w3.org/ns/prov#> .
-@prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
-@prefix wf4ever: <http://purl.org/wf4ever/wf4ever#> .
-@prefix roterms: <http://purl.org/wf4ever/roterms#> .
-@prefix dc: <http://purl.org/dc/elements/1.1/> .
-@prefix dcterms: <http://purl.org/dc/terms/> .
-@prefix comp: <http://purl.org/DP/components#> .
-@prefix dep: <http://scape.keep.pt/vocab/dependencies#> .
-@prefix biocat: <http://biocatalogue.org/attribute/> .
-@prefix : <#> .
-
-<processor/Concatenate_two_strings/> a wfdesc:Process , wfdesc:Description , owl:Thing , wf4ever:BeanshellScript ;
- rdfs:label "Concatenate_two_strings" ;
- wfdesc:hasInput <processor/Concatenate_two_strings/in/string1> , <processor/Concatenate_two_strings/in/string2> ;
- wfdesc:hasOutput <processor/Concatenate_two_strings/out/output> ;
- wf4ever:script "output = string1 + string2;" .
-
-<datalink?from=in/name&to=processor/Concatenate_two_strings/in/string2> a wfdesc:DataLink ;
- wfdesc:hasSource <in/name> ;
- wfdesc:hasSink <processor/Concatenate_two_strings/in/string2> .
-
-<datalink?from=processor/Concatenate_two_strings/out/output&to=out/greeting> a wfdesc:DataLink ;
- wfdesc:hasSource <processor/Concatenate_two_strings/out/output> ;
- wfdesc:hasSink <out/greeting> .
-
-<datalink?from=processor/hello/out/value&to=processor/Concatenate_two_strings/in/string1> a wfdesc:DataLink ;
- wfdesc:hasSource <processor/hello/out/value> ;
- wfdesc:hasSink <processor/Concatenate_two_strings/in/string1> .
-
-<> a wfdesc:Workflow , wfdesc:Description , wfdesc:Process ;
- dcterms:description "An extension to helloworld.t2flow - this workflow takes a workflow input \"name\" which is combined with the string constant \"Hello, \" using the local worker \"Concatenate two strings\", and outputs the produced string to the workflow output \"greeting\"." ;
- dc:creator "Stian Soiland-Reyes" ;
- dcterms:title "Hello Anyone" ;
- rdfs:label "Hello_Anyone" ;
- wfdesc:hasInput <in/name> ;
- wfdesc:hasOutput <out/greeting> ;
- wfdesc:hasSubProcess <processor/Concatenate_two_strings/> , <processor/hello/> ;
- wfdesc:hasDataLink <datalink?from=processor/Concatenate_two_strings/out/output&to=out/greeting> , <datalink?from=processor/hello/out/value&to=processor/Concatenate_two_strings/in/string1> , <datalink?from=in/name&to=processor/Concatenate_two_strings/in/string2> .
-
-<in/name> a wfdesc:Input , wfdesc:Description , wfdesc:Output ;
- dcterms:description "Your name for the greeting" ;
- biocat:exampleData "World!" ;
- rdfs:label "name" .
-
-<out/greeting> a wfdesc:Output , wfdesc:Description , wfdesc:Input ;
- rdfs:label "greeting" .
-
-<processor/Concatenate_two_strings/in/string1> a wfdesc:Input , wfdesc:Description ;
- rdfs:label "string1" .
-
-<processor/Concatenate_two_strings/in/string2> a wfdesc:Input , wfdesc:Description ;
- rdfs:label "string2" .
-
-<processor/Concatenate_two_strings/out/output> a wfdesc:Output , wfdesc:Description ;
- rdfs:label "output" .
-
-<processor/hello/> a wfdesc:Process , wfdesc:Description ;
- rdfs:label "hello" ;
- wfdesc:hasOutput <processor/hello/out/value> .
-
-<processor/hello/out/value> a wfdesc:Output , wfdesc:Description ;
- rdfs:label "value" .
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/.ro/manifest.json
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diff --git a/taverna-prov/example/helloanyone.bundle/.ro/manifest.json b/taverna-prov/example/helloanyone.bundle/.ro/manifest.json
deleted file mode 100644
index 6d17907..0000000
--- a/taverna-prov/example/helloanyone.bundle/.ro/manifest.json
+++ /dev/null
@@ -1,68 +0,0 @@
-{
- "@context" : [ "https://w3id.org/bundle/context" ],
- "id" : "/",
- "manifest" : [ "/.ro/manifest.json" ],
- "createdOn" : "2014-05-28T10:49:48.072Z",
- "createdBy" : [ {
- "uri" : "http://ns.taverna.org.uk/2010/xml/t2flow/raven/org.purl.wf4ever.provtaverna/prov-taverna-export/2.2.0/org.purl.wf4ever.provtaverna.export.W3ProvenanceExport",
- "name" : "Taverna-PROV plugin"
- } ],
- "aggregates" : [ {
- "file" : "/workflow.wfbundle",
- "folder" : "/",
- "mediatype" : "application/vnd.taverna.scufl2.workflow-bundle",
- "createdOn" : "2014-05-28T10:49:46.586Z",
- "proxy" : "urn:uuid:1494a65e-5b3a-4ddb-8818-c74f968aa332"
- }, {
- "file" : "/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt",
- "folder" : "/intermediates/3a/",
- "mediatype" : "text/plain",
- "createdOn" : "2014-05-28T10:49:45.655Z",
- "proxy" : "urn:uuid:3d4a1129-e6f7-456a-9332-eee30cf4182e"
- }, {
- "file" : "/inputs/name.txt",
- "folder" : "/inputs/",
- "mediatype" : "text/plain",
- "createdOn" : "2014-05-28T10:49:45.606Z",
- "proxy" : "urn:uuid:c2677561-6885-4085-8502-6a3c9072e402"
- }, {
- "file" : "/workflowrun.prov.ttl",
- "folder" : "/",
- "mediatype" : "text/turtle",
- "createdOn" : "2014-05-28T10:49:45.769Z",
- "createdBy" : [ {
- "uri" : "http://ns.taverna.org.uk/2011/software/taverna-cmd-core-2.5.0",
- "name" : "Taverna command line core 2.5.0"
- }, {
- "uri" : "http://ns.taverna.org.uk/2010/xml/t2flow/raven/org.purl.wf4ever.provtaverna/prov-taverna-export/2.2.0/org.purl.wf4ever.provtaverna.export.W3ProvenanceExport",
- "name" : "Taverna-PROV plugin"
- } ],
- "proxy" : "urn:uuid:78b482dd-407f-4334-b620-b0cff550c601"
- }, {
- "file" : "/outputs/greeting.txt",
- "folder" : "/outputs/",
- "mediatype" : "text/plain",
- "createdOn" : "2014-05-28T10:49:45.614Z",
- "proxy" : "urn:uuid:e5b9333d-d82d-4bcd-96e5-74fbf87e6225"
- } ],
- "annotations" : [ {
- "annotation" : "urn:uuid:a2f03983-8836-4c36-bfb2-d713d9a1928f",
- "about" : "/workflow.wfbundle",
- "content" : "/.ro/annotations/a2f03983-8836-4c36-bfb2-d713d9a1928f.ttl"
- }, {
- "about" : "http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/",
- "content" : "/workflow.wfbundle"
- }, {
- "about" : "http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/",
- "content" : "/"
- }, {
- "about" : "http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/",
- "content" : "/workflow.wfbundle"
- }, {
- "about" : "/workflow.wfbundle",
- "content" : "/.ro/annotations/workflow.wfdesc.ttl"
- }, {
- "about" : "/",
- "content" : "/workflowrun.prov.ttl"
- } ]
-}
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/inputs/name.txt
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diff --git a/taverna-prov/example/helloanyone.bundle/inputs/name.txt b/taverna-prov/example/helloanyone.bundle/inputs/name.txt
deleted file mode 100644
index 86654dd..0000000
--- a/taverna-prov/example/helloanyone.bundle/inputs/name.txt
+++ /dev/null
@@ -1 +0,0 @@
-fred
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt
----------------------------------------------------------------------
diff --git a/taverna-prov/example/helloanyone.bundle/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt b/taverna-prov/example/helloanyone.bundle/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt
deleted file mode 100644
index 444ac36..0000000
--- a/taverna-prov/example/helloanyone.bundle/intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt
+++ /dev/null
@@ -1 +0,0 @@
-Hello,
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/mimetype
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diff --git a/taverna-prov/example/helloanyone.bundle/mimetype b/taverna-prov/example/helloanyone.bundle/mimetype
deleted file mode 100644
index bfd43b6..0000000
--- a/taverna-prov/example/helloanyone.bundle/mimetype
+++ /dev/null
@@ -1 +0,0 @@
-application/vnd.wf4ever.robundle+zip
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/outputs/greeting.txt
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diff --git a/taverna-prov/example/helloanyone.bundle/outputs/greeting.txt b/taverna-prov/example/helloanyone.bundle/outputs/greeting.txt
deleted file mode 100644
index 8658be5..0000000
--- a/taverna-prov/example/helloanyone.bundle/outputs/greeting.txt
+++ /dev/null
@@ -1 +0,0 @@
-Hello, fred
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/workflow.wfbundle
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diff --git a/taverna-prov/example/helloanyone.bundle/workflow.wfbundle b/taverna-prov/example/helloanyone.bundle/workflow.wfbundle
deleted file mode 100644
index 5879efa..0000000
Binary files a/taverna-prov/example/helloanyone.bundle/workflow.wfbundle and /dev/null differ
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl
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diff --git a/taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl b/taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl
deleted file mode 100644
index 126047d..0000000
--- a/taverna-prov/example/helloanyone.bundle/workflowrun.prov.ttl
+++ /dev/null
@@ -1,270 +0,0 @@
-@prefix dc: <http://purl.org/dc/elements/1.1/> .
-@prefix prov: <http://www.w3.org/ns/prov#> .
-@prefix cnt: <http://www.w3.org/2011/content#> .
-@prefix foaf: <http://xmlns.com/foaf/0.1/> .
-@prefix dcmitype: <http://purl.org/dc/dcmitype/> .
-@prefix wfprov: <http://purl.org/wf4ever/wfprov#> .
-@prefix dcam: <http://purl.org/dc/dcam/> .
-@prefix xml: <http://www.w3.org/XML/1998/namespace> .
-@prefix vs: <http://www.w3.org/2003/06/sw-vocab-status/ns#> .
-@prefix dcterms: <http://purl.org/dc/terms/> .
-@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
-@prefix wot: <http://xmlns.com/wot/0.1/> .
-@prefix wfdesc: <http://purl.org/wf4ever/wfdesc#> .
-@prefix dct: <http://purl.org/dc/terms/> .
-@prefix tavernaprov: <http://ns.taverna.org.uk/2012/tavernaprov/> .
-@prefix owl: <http://www.w3.org/2002/07/owl#> .
-@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
-@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
-@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
-@prefix scufl2: <http://ns.taverna.org.uk/2010/scufl2#> .
-
-<http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/3a82e39d-a537-40cf-91a0-2c89d4a2e62b>
- tavernaprov:content <intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string1> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value> ;
- wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/2c72b19f-c6d6-4fae-88ab-f96ec0b11fb7/> ;
- prov:qualifiedGeneration _:b0 ;
- prov:wasGeneratedBy <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/2c72b19f-c6d6-4fae-88ab-f96ec0b11fb7/> ;
- rdf:type wfprov:Artifact ;
- rdf:type prov:Entity .
-
-_:b1 prov:atTime "2014-05-28T11:49:43.601+01:00"^^xsd:dateTime ;
- rdf:type prov:Start .
-
-_:b0 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value> ;
- prov:activity <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/2c72b19f-c6d6-4fae-88ab-f96ec0b11fb7/> ;
- rdf:type prov:Generation .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string2>
- rdfs:comment "Concatenate_two_strings input string2"@en ;
- rdfs:label "string2" ;
- rdf:type wfdesc:Input ;
- rdf:type prov:Role .
-
-_:b2 prov:atTime "2014-05-28T10:49:45.524Z"^^xsd:dateTime ;
- rdf:type prov:Start .
-
-<intermediates/3a/3a82e39d-a537-40cf-91a0-2c89d4a2e62b.txt>
- rdf:type cnt:ContentAsText ;
- cnt:characterEncoding "UTF-8"^^xsd:string ;
- cnt:chars "Hello, "^^xsd:string ;
- tavernaprov:byteCount "7"^^xsd:long ;
- tavernaprov:sha512 "cf83e1357eefb8bdf1542850d66d8007d620e4050b5715dc83f4a921d36ce9ce47d0d13c5d85f2b0ff8318d2877eec2f63b931bd47417a81a538327af927da3e"^^xsd:string ;
- tavernaprov:sha1 "f52ab57fa51dfa714505294444463ae5a009ae34"^^xsd:string ;
- rdf:type tavernaprov:Content .
-
-_:b3 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> ;
- prov:entity <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- rdf:type prov:Usage .
-
-_:b4 prov:atTime "2014-05-28T11:49:43.711+01:00"^^xsd:dateTime ;
- rdf:type prov:End .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string1>
- rdfs:comment "Concatenate_two_strings input string1"@en ;
- rdfs:label "string1" ;
- rdf:type wfdesc:Input ;
- rdf:type prov:Role .
-
-<outputs/greeting.txt>
- rdf:type cnt:ContentAsText ;
- cnt:characterEncoding "UTF-8"^^xsd:string ;
- cnt:chars "Hello, fred"^^xsd:string ;
- tavernaprov:byteCount "11"^^xsd:long ;
- tavernaprov:sha512 "cf83e1357eefb8bdf1542850d66d8007d620e4050b5715dc83f4a921d36ce9ce47d0d13c5d85f2b0ff8318d2877eec2f63b931bd47417a81a538327af927da3e"^^xsd:string ;
- tavernaprov:sha1 "83577aa951bee185cc0d094e63af25f3d5d433d4"^^xsd:string ;
- rdf:type tavernaprov:Content .
-
-<http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121>
- tavernaprov:content <inputs/name.txt> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string2> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name> ;
- rdf:type wfprov:Artifact ;
- rdf:type prov:Entity .
-
-_:b5 prov:hadPlan <http://ns.taverna.org.uk/2011/software/taverna-cmd-core-2.5.0> ;
- prov:agent <#taverna-engine> ;
- rdf:type prov:Association .
-
-_:b6 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/out/greeting> ;
- prov:activity <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- rdf:type prov:Generation .
-
-_:b7 prov:hadPlan <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/> ;
- prov:agent <#taverna-engine> ;
- rdf:type prov:Association .
-
-<http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/2c72b19f-c6d6-4fae-88ab-f96ec0b11fb7/>
- rdfs:label "Processor execution hello"@en ;
- wfprov:describedByProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- prov:qualifiedStart _:b8 ;
- rdf:type wfprov:ProcessRun ;
- wfprov:wasEnactedBy <#taverna-engine> ;
- prov:qualifiedAssociation _:b9 ;
- prov:qualifiedEnd _:b10 ;
- prov:startedAtTime "2014-05-28T11:49:43.409+01:00"^^xsd:dateTime ;
- wfprov:wasPartOfWorkflowRun <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- prov:wasAssociatedWith <#taverna-engine> ;
- prov:endedAtTime "2014-05-28T11:49:43.461+01:00"^^xsd:dateTime .
-
-_:b11 prov:activity <#taverna-prov-export> ;
- rdf:type prov:Generation .
-
-_:b12 prov:activity <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- rdf:type prov:Communication .
-
-_:b8 prov:atTime "2014-05-28T11:49:43.409+01:00"^^xsd:dateTime ;
- rdf:type prov:Start .
-
-_:b13 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string2> ;
- prov:entity <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- rdf:type prov:Usage .
-
-<http://ns.taverna.org.uk/2011/software/taverna-cmd-core-2.5.0>
- rdfs:label "Taverna command line core 2.5.0"@en ;
- rdf:type prov:Plan .
-
-<http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/>
- prov:qualifiedUsage _:b3 ;
- wfprov:describedByWorkflow <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> ;
- prov:qualifiedEnd _:b14 ;
- wfprov:usedInput <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- prov:endedAtTime "2014-05-28T11:49:43.736+01:00"^^xsd:dateTime ;
- rdfs:label "Workflow run of Hello_Anyone"@en ;
- dct:hasPart <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/2c72b19f-c6d6-4fae-88ab-f96ec0b11fb7/> ;
- prov:wasAssociatedWith <#taverna-engine> ;
- prov:qualifiedAssociation _:b15 ;
- prov:qualifiedStart _:b16 ;
- wfprov:wasEnactedBy <#taverna-engine> ;
- rdf:type wfprov:WorkflowRun ;
- dct:hasPart <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/682e212e-242d-4b4d-999b-e6ea4757f595/> ;
- prov:used <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- prov:startedAtTime "2014-05-28T11:49:43.166+01:00"^^xsd:dateTime .
-
-<> foaf:primaryTopic <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- prov:qualifiedGeneration _:b11 ;
- prov:wasGeneratedBy <#taverna-prov-export> ;
- rdf:type prov:Bundle .
-
-<http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d97338ab-e6c8-4513-a305-a237c70ee63e>
- tavernaprov:content <outputs/greeting.txt> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/out/output> ;
- wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/682e212e-242d-4b4d-999b-e6ea4757f595/> ;
- prov:qualifiedGeneration _:b17 ;
- wfprov:wasOutputFrom <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- prov:wasGeneratedBy <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/682e212e-242d-4b4d-999b-e6ea4757f595/> ;
- wfprov:describedByParameter <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/out/greeting> ;
- rdf:type wfprov:Artifact ;
- rdf:type prov:Entity .
-
-_:b15 prov:hadPlan <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/> ;
- prov:agent <#taverna-engine> ;
- rdf:type prov:Association .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/out/output>
- rdfs:comment "Concatenate_two_strings output output"@en ;
- rdfs:label "output" ;
- rdf:type wfdesc:Output ;
- rdf:type prov:Role .
-
-<#taverna-prov-export>
- rdfs:label "taverna-prov export of workflow run provenance"@en ;
- prov:startedAtTime "2014-05-28T10:49:45.524Z"^^xsd:dateTime ;
- prov:qualifiedStart _:b2 ;
- prov:wasInformedBy <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- rdf:type prov:Activity ;
- prov:qualifiedEnd _:b18 ;
- prov:qualifiedAssociation _:b5 ;
- prov:qualifiedCommunication _:b12 ;
- prov:endedAtTime "2014-05-28T10:49:45.674Z"^^xsd:dateTime ;
- prov:wasAssociatedWith <#taverna-engine> .
-
-<http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/682e212e-242d-4b4d-999b-e6ea4757f595/>
- rdf:type wfprov:ProcessRun ;
- wfprov:describedByProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/> ;
- prov:wasAssociatedWith <#taverna-engine> ;
- prov:startedAtTime "2014-05-28T11:49:43.601+01:00"^^xsd:dateTime ;
- wfprov:wasPartOfWorkflowRun <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/> ;
- wfprov:usedInput <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- rdfs:label "Processor execution Concatenate_two_strings"@en ;
- prov:used <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/d3d2e008-af7f-4c8c-9369-85d2d71c8121> ;
- prov:qualifiedAssociation _:b7 ;
- wfprov:wasEnactedBy <#taverna-engine> ;
- prov:endedAtTime "2014-05-28T11:49:43.711+01:00"^^xsd:dateTime ;
- prov:qualifiedUsage _:b19 ;
- prov:qualifiedEnd _:b4 ;
- prov:qualifiedStart _:b1 ;
- wfprov:usedInput <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/3a82e39d-a537-40cf-91a0-2c89d4a2e62b> ;
- prov:qualifiedUsage _:b13 ;
- prov:used <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/3a82e39d-a537-40cf-91a0-2c89d4a2e62b> .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/in/name>
- rdfs:comment "Workflow input name"@en ;
- rdfs:label "name" ;
- rdf:type wfdesc:Input ;
- rdf:type prov:Role .
-
-_:b10 prov:atTime "2014-05-28T11:49:43.461+01:00"^^xsd:dateTime ;
- rdf:type prov:End .
-
-_:b19 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/in/string1> ;
- prov:entity <http://ns.taverna.org.uk/2011/data/a85ef801-3db0-4c56-93a7-532d1b4afbf1/ref/3a82e39d-a537-40cf-91a0-2c89d4a2e62b> ;
- rdf:type prov:Usage .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/>
- rdfs:label "Processor hello"@en ;
- rdf:type wfdesc:Process ;
- rdf:type prov:Plan .
-
-_:b16 prov:atTime "2014-05-28T11:49:43.166+01:00"^^xsd:dateTime ;
- rdf:type prov:Start .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/>
- dct:hasPart <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/> ;
- wfdesc:hasSubProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/> ;
- dct:hasPart <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- wfdesc:hasSubProcess <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- rdf:type wfdesc:Workflow ;
- rdf:type prov:Plan .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/out/value>
- rdfs:comment "hello output value"@en ;
- rdfs:label "value" ;
- rdf:type wfdesc:Output ;
- rdf:type prov:Role .
-
-<inputs/name.txt> rdf:type cnt:ContentAsText ;
- cnt:characterEncoding "UTF-8"^^xsd:string ;
- cnt:chars "fred"^^xsd:string ;
- tavernaprov:byteCount "4"^^xsd:long ;
- tavernaprov:sha512 "cf83e1357eefb8bdf1542850d66d8007d620e4050b5715dc83f4a921d36ce9ce47d0d13c5d85f2b0ff8318d2877eec2f63b931bd47417a81a538327af927da3e"^^xsd:string ;
- tavernaprov:sha1 "31017a722665e4afce586950f42944a6d331dabf"^^xsd:string ;
- rdf:type tavernaprov:Content .
-
-_:b9 prov:hadPlan <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/hello/> ;
- prov:agent <#taverna-engine> ;
- rdf:type prov:Association .
-
-_:b17 prov:hadRole <http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/out/output> ;
- prov:activity <http://ns.taverna.org.uk/2011/run/a85ef801-3db0-4c56-93a7-532d1b4afbf1/process/682e212e-242d-4b4d-999b-e6ea4757f595/> ;
- rdf:type prov:Generation .
-
-<#taverna-engine> rdf:type tavernaprov:TavernaEngine .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/processor/Concatenate_two_strings/>
- rdfs:label "Processor Concatenate_two_strings"@en ;
- rdf:type wfdesc:Process ;
- rdf:type prov:Plan .
-
-<http://ns.taverna.org.uk/2010/workflowBundle/01348671-5aaa-4cc2-84cc-477329b70b0d/workflow/Hello_Anyone/out/greeting>
- rdfs:comment "Workflow output greeting"@en ;
- rdfs:label "greeting" ;
- rdf:type wfdesc:Output ;
- rdf:type prov:Role .
-
-_:b18 prov:atTime "2014-05-28T10:49:45.674Z"^^xsd:dateTime ;
- rdf:type prov:End .
-
-_:b14 prov:atTime "2014-05-28T11:49:43.736+01:00"^^xsd:dateTime ;
- rdf:type prov:End .
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov/example/helloanyone.t2flow
----------------------------------------------------------------------
diff --git a/taverna-prov/example/helloanyone.t2flow b/taverna-prov/example/helloanyone.t2flow
deleted file mode 100644
index c691d21..0000000
--- a/taverna-prov/example/helloanyone.t2flow
+++ /dev/null
@@ -1,177 +0,0 @@
-<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow" version="1" producedBy="taverna-2.2.0"><dataflow id="01348671-5aaa-4cc2-84cc-477329b70b0d" role="top"><name>Hello_Anyone</name><inputPorts><port><name>name</name><depth>0</depth><granularDepth>0</granularDepth><annotations><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.ExampleValue">
- <text>World!</text>
- </annotationBean>
- <date>2012-01-03 15:13:04.106 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription">
- <text>Your name for the greeting</text>
- </annotationBean>
- <date>2012-01-03 15:13:12.530 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain></annotations></port></inputPorts><outputPorts><port><name>greeting</name><annotations /></port></outputPorts><processors><processor><name>hello</name><inputPorts /><outputPorts><port><name>value</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>stringconstant-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.stringconstant.StringConstantActivity</class><inputMap /><outputMap><map from="value" to="value" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean xmlns="">
- <value>Hello, </value>
-</net.sf.taverna.t2.activities.stringconstant.StringConstantConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
- <maxJobs>1</maxJobs>
-</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="
">
- <backoffFactor>1.0</backoffFactor>
- <initialDelay>1000</initialDelay>
- <maxDelay>5000</maxDelay>
- <maxRetries>0</maxRetries>
-</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy /></iteration></iterationStrategyStack></processor><processor><name>Concatenate_two_strings</name><inputPorts><port><name>string1</name><depth>0</depth></port><port><name>string2</name><depth>0</depth></port></inputPorts><outputPorts><port><name>output</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations /><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>localworker-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.localworker.LocalworkerActivi
ty</class><inputMap><map from="string2" to="string2" /><map from="string1" to="string1" /></inputMap><outputMap><map from="output" to="output" /></outputMap><configBean encoding="xstream"><net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean xmlns="">
- <localworkerName>org.embl.ebi.escience.scuflworkers.java.StringConcat</localworkerName>
- <script>output = string1 + string2;</script>
- <dependencies />
- <classLoaderSharing>workflow</classLoaderSharing>
- <localDependencies />
- <artifactDependencies />
- <inputs>
- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
- <handledReferenceSchemes />
- <translatedElementType>java.lang.String</translatedElementType>
- <allowsLiteralValues>true</allowsLiteralValues>
- <name>string1</name>
- <depth>0</depth>
- <mimeTypes>
- <string>'text/plain'</string>
- </mimeTypes>
- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
- <handledReferenceSchemes />
- <translatedElementType>java.lang.String</translatedElementType>
- <allowsLiteralValues>true</allowsLiteralValues>
- <name>string2</name>
- <depth>0</depth>
- <mimeTypes>
- <string>'text/plain'</string>
- </mimeTypes>
- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
- </inputs>
- <outputs>
- <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
- <granularDepth>0</granularDepth>
- <name>output</name>
- <depth>0</depth>
- <mimeTypes>
- <string>'text/plain'</string>
- </mimeTypes>
- </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
- </outputs>
-</net.sf.taverna.t2.activities.localworker.LocalworkerActivityConfigurationBean></configBean><annotations /></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig xmlns="">
- <maxJobs>1</maxJobs>
-</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig xmlns="
">
- <backoffFactor>1.0</backoffFactor>
- <initialDelay>1000</initialDelay>
- <maxDelay>5000</maxDelay>
- <maxRetries>0</maxRetries>
-</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2.core</group><artifact>workflowmodel-impl</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean encoding="xstream"><null xmlns="" /></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port name="string1" depth="0" /><port name="string2" depth="0" /></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions /><datalinks><datalink><sink type="processor"><processor>Concatenate_two_strings</processor><port>string1</port></sink><source type="processor"><processor>hello</processor><port>value</port></source></datalink><datalink><sink type="processor"><processor>Concatenate_two_strings</processor><port>string2</port></sink><source type="dataflow"><port>name</port></source></datalink><datalin
k><sink type="dataflow"><port>greeting</port></sink><source type="processor"><processor>Concatenate_two_strings</processor><port>output</port></source></datalink></datalinks><annotations><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
- <identification>8781d5f4-d0ba-48a8-a1d1-14281bd8a917</identification>
- </annotationBean>
- <date>2012-01-03 15:12:21.684 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
- <identification>ca7dba1d-1fdf-476f-b911-714d09227d70</identification>
- </annotationBean>
- <date>2012-01-03 15:14:18.734 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.Author">
- <text>Stian Soiland-Reyes</text>
- </annotationBean>
- <date>2012-01-03 15:10:48.73 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.DescriptiveTitle">
- <text>Hello Anyone</text>
- </annotationBean>
- <date>2012-01-03 15:14:25.703 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.DescriptiveTitle">
- <text>Hello World</text>
- </annotationBean>
- <date>2012-01-03 15:10:54.167 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription">
- <text>One of the simplest workflows possible, outputting the String Constant "Hello world!"</text>
- </annotationBean>
- <date>2012-01-03 15:11:14.557 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription">
- <text>An extension to helloworld.t2flow - this workflow takes a workflow input "name" which is combined with the string constant "Hello, " using the local worker "Concatenate two strings", and outputs the produced string to the workflow output "greeting".</text>
- </annotationBean>
- <date>2012-01-03 15:14:13.847 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription">
- <text>One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".</text>
- </annotationBean>
- <date>2012-01-03 15:12:15.643 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain><annotation_chain_2_2 encoding="xstream"><net.sf.taverna.t2.annotation.AnnotationChainImpl xmlns="">
- <annotationAssertions>
- <net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- <annotationBean class="net.sf.taverna.t2.annotation.annotationbeans.IdentificationAssertion">
- <identification>01348671-5aaa-4cc2-84cc-477329b70b0d</identification>
- </annotationBean>
- <date>2012-01-03 15:14:30.45 GMT</date>
- <creators />
- <curationEventList />
- </net.sf.taverna.t2.annotation.AnnotationAssertionImpl>
- </annotationAssertions>
-</net.sf.taverna.t2.annotation.AnnotationChainImpl></annotation_chain_2_2></annotations></dataflow></workflow>
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