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Posted to dev@airavata.apache.org by "Saminda Wijeratne (JIRA)" <ji...@apache.org> on 2012/08/02 03:19:02 UTC
[jira] [Commented] (AIRAVATA-523) Airavata incorrectly labels
failed workflows as finished successfully.
[ https://issues.apache.org/jira/browse/AIRAVATA-523?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13427060#comment-13427060 ]
Saminda Wijeratne commented on AIRAVATA-523:
--------------------------------------------
Hi Sudhakar,
Can you or Ning verify which version of Airavata is used at the moment please? If it is still 0.3 we need to upgrade it to 0.4 (which Lahiru did I separately as I remember) and check again. We fixed some of error notifications in 0.4.
> Airavata incorrectly labels failed workflows as finished successfully.
> ----------------------------------------------------------------------
>
> Key: AIRAVATA-523
> URL: https://issues.apache.org/jira/browse/AIRAVATA-523
> Project: Airavata
> Issue Type: Bug
> Reporter: Sudhakar Pamidighantam
>
> Workflow details here.
> xbayaWorkflowName":"dmh2__1343788729","status":"STARTED","startDate":1343788729,"userId":"spamidig","workflowIdtoAvirata":"ParamChem5-fullWithURLs_7bcf9180-60d1-4f65-b996f56f2ada93d6","cgenffOutputMolName":"dmh2","cgenffOutputPath":"C:\\Users\\spamidig\\gridchem\\paramchem\\paramchemData\\cgenff_project\\dmh2_20120731","workflowId":"ParamChem5-fullWithURLs_Tue Jul 31 21:38:49 CDT 2012","projectName":"spamidig"}]}
>
> Monitor Dash Board message log entries.
>
> 00:06:05.231 08/01/12 charmm_pot_ener_scan_fit_invoke INFO Status of job https://ember.ncsa.illinois.edu:50886/59650/1343797544/is DONE
> 00:06:44.518 08/01/12 charmm_pot_ener_scan_fit_invoke computationDuration [Computation Time taken = 60534 ms]
> 00:06:53.290 08/01/12 charmm_pot_ener_scan_fit_invoke receivedResult step5B2_predicted_rmsd=4.86556, predicted_plot_ene=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit/fit_dmh22.ene, fitted_dihedrals_prm=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit/fit_dmh22.prm, step5B2_charmm_rmsd=4.86541, charmm_plot_ene=/gpfs2/scratch/users/ccguser/xbaya-workdirs/charmm_pot_ener_scan_fit_proposed_Wed_Aug_01_01_05_33_EDT_2012_2c1c1cfe-df2b-488c-a88d-e80b4dbbf39d/dmh2/fit_verify/scan_dmh23.ene, molecule_dir_out_tgz=/gpfs2/scratch/users/ccguser/xbaya-workdirs/Model_Ref_Data_Prep_proposed_Tue_Jul_31_22_40_00_EDT_2012_d6ea933e-a94e-42e4-bef4-7f21ac86c94f/molecule_dir_out.tgz
> 00:07:02.575 08/01/12 charmm_pot_ener_scan_validate_init_guess_invoke invokingServiceFailed Error in getting output. name: molecule_dir_out_tgz: org.apache.airavata.xbaya.XBayaException: Error in getting output. name: molecule_dir_out_tgz
> 00:07:02.685 08/01/12 charmm_pot_ener_scan_fit_invoke invokingServiceFailed Error in getting output. name: Parameter: org.apache.airavata.xbaya.XBayaException: Error in getting output. name: Parameter
> 00:07:02.943 08/01/12 sendingResult
> 00:07:03.815 08/01/12 workflowTerminated Workflow finished successfully.
> 00:07:03.839 08/01/12 sendingResult
> Notice that charmm_pot_ener_scan_fit_invoke step failed with an error while later the workflow shows terminated with finished successfully. The same message also appears in the API based monitor as well.
> These should labelled as workflow terminated with error in a step.
> Thanks,
> Sudhakar.
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