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Posted to issues@airavata.apache.org by "srirampc (via GitHub)" <gi...@apache.org> on 2024/03/13 18:31:40 UTC

[PR] Allen Brain Cell Atlas (ABC) Mouse MERFISH Data Analysis [airavata-cerebrum]

srirampc opened a new pull request, #11:
URL: https://github.com/apache/airavata-cerebrum/pull/11

   Added functionality:
   - Download meta data, gene expression matrices from Allen Brain Cell Atlas AWS data repository. 
   - Load and integrate Cell metadata and CCF meta data along with gene expression data
   - Aggregate gene expression data by layers.
   
    Also added a notebook that demonstrates extracting inhibitory cells ratio and Pvalb/Vip ratio from gene expression data.


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Re: [PR] Allen Brain Cell Atlas (ABC) Mouse MERFISH Data Analysis [airavata-cerebrum]

Posted by "DImuthuUpe (via GitHub)" <gi...@apache.org>.
DImuthuUpe merged PR #11:
URL: https://github.com/apache/airavata-cerebrum/pull/11


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