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Posted to issues@hbase.apache.org by "bbeaudreault (via GitHub)" <gi...@apache.org> on 2023/12/05 18:20:46 UTC

[PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

bbeaudreault opened a new pull request, #5561:
URL: https://github.com/apache/hbase/pull/5561

   We routinely see JVM crashes originating from our RegionServerMetricsWrapperRunnable in jdk17 on aarch64. Since that method is so large, it's hard to know exactly where or what the problem is. There is an [issue submitted](https://github.com/adoptium/adoptium-support/issues/951), but no indication of whether or when a fix will come.
   
   The core dump indicates its a problem with On Stack Replacement (OSR). Reading up on that, it can kick in when long methods are suddenly deemed hot and attempt to be optimized in place. Taking a stab in the dark based on that, I saw two potential issues in RegionServerMetricsWrapperRunnable:
   1. The method is exceptionally long, especially when considering the loops
   2. There are over 50 volatile variables updated in the parent class
   
   This PR attempts to solve both issues:
   
   1. Most of the volatile variables are replaced by a single volatile RegionMetricAggregate.
   2. I tried to break down the giant method into organized units:
     a. regionserver-level calculations are left in the run() method
     b. the main `aggregate()` method of RegionMetricAggregate loops and collects region-level metrics
     c. for each region, an `aggregateStores()` method is called which loops and collects store-level metrics.
   
   This may not be perfect, but I think it's an improvement for three reasons:
   1. I've been running it internally for a couple weeks and have not seen a crash (previously multiple per day)
   2. It attempts to organize the code a little bit so its easier to manage.
   3. It's a net-reduction in production code
   
   In order to ensure this refactor did not break any metrics, I wrote an exhaustive unit test. It validates each of the aggregated getters, and succeeds against both the old and new implementation.


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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841437764

   :broken_heart: **-1 overall**
   
   
   
   
   
   
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   |  |   |  32m  9s |   |
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841505148

   :confetti_ball: **+1 overall**
   
   
   
   
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1843718907

   :broken_heart: **-1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 32s |  Docker mode activated.  |
   | -0 :warning: |  yetus  |   0m  3s |  Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck  |
   ||| _ Prechecks _ |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 39s |  master passed  |
   | +1 :green_heart: |  compile  |   0m 42s |  master passed  |
   | +1 :green_heart: |  shadedjars  |   4m 50s |  branch has no errors when building our shaded downstream artifacts.  |
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   ||| _ Patch Compile Tests _ |
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   | +1 :green_heart: |  compile  |   0m 41s |  the patch passed  |
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   | +1 :green_heart: |  javadoc  |   0m 24s |  the patch passed  |
   ||| _ Other Tests _ |
   | -1 :x: |  unit  | 236m 19s |  hbase-server in the patch failed.  |
   |  |   | 257m 54s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/3/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
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   |  Test Results | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/3/testReport/ |
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   | versions | git=2.34.1 maven=3.8.6 |
   | Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1843693889

   :broken_heart: **-1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 25s |  Docker mode activated.  |
   | -0 :warning: |  yetus  |   0m  2s |  Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck  |
   ||| _ Prechecks _ |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 59s |  master passed  |
   | +1 :green_heart: |  compile  |   0m 43s |  master passed  |
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   | +1 :green_heart: |  javadoc  |   0m 25s |  master passed  |
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   | +1 :green_heart: |  javac  |   0m 43s |  the patch passed  |
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   | +1 :green_heart: |  javadoc  |   0m 22s |  the patch passed  |
   ||| _ Other Tests _ |
   | -1 :x: |  unit  | 215m 17s |  hbase-server in the patch failed.  |
   |  |   | 237m 40s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/3/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
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   | versions | git=2.34.1 maven=3.8.6 |
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841777764

   :confetti_ball: **+1 overall**
   
   
   
   
   
   
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   ||| _ Prechecks _ |
   ||| _ master Compile Tests _ |
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   | +1 :green_heart: |  javadoc  |   0m 25s |  master passed  |
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   | +1 :green_heart: |  compile  |   0m 48s |  the patch passed  |
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   | +1 :green_heart: |  javadoc  |   0m 25s |  the patch passed  |
   ||| _ Other Tests _ |
   | +1 :green_heart: |  unit  | 220m 48s |  hbase-server in the patch passed.  |
   |  |   | 243m  4s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/2/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841431107

   :broken_heart: **-1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 31s |  Docker mode activated.  |
   | -0 :warning: |  yetus  |   0m  3s |  Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck  |
   ||| _ Prechecks _ |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 42s |  master passed  |
   | +1 :green_heart: |  compile  |   0m 43s |  master passed  |
   | +1 :green_heart: |  shadedjars  |   4m 51s |  branch has no errors when building our shaded downstream artifacts.  |
   | +1 :green_heart: |  javadoc  |   0m 25s |  master passed  |
   ||| _ Patch Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 22s |  the patch passed  |
   | +1 :green_heart: |  compile  |   0m 41s |  the patch passed  |
   | +1 :green_heart: |  javac  |   0m 41s |  the patch passed  |
   | -1 :x: |  shadedjars  |   3m 43s |  patch has 10 errors when building our shaded downstream artifacts.  |
   | +1 :green_heart: |  javadoc  |   0m 25s |  the patch passed  |
   ||| _ Other Tests _ |
   | -1 :x: |  unit  |  11m  6s |  hbase-server in the patch failed.  |
   |  |   |  29m 11s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/1/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
   | Optional Tests | javac javadoc unit shadedjars compile |
   | uname | Linux ae77aecf3449 5.4.0-166-generic #183-Ubuntu SMP Mon Oct 2 11:28:33 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
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   | git revision | master / 25e9228e2c |
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   | versions | git=2.34.1 maven=3.8.6 |
   | Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1843371342

   :confetti_ball: **+1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 38s |  Docker mode activated.  |
   ||| _ Prechecks _ |
   | +1 :green_heart: |  dupname  |   0m  0s |  No case conflicting files found.  |
   | +1 :green_heart: |  hbaseanti  |   0m  0s |  Patch does not have any anti-patterns.  |
   | +1 :green_heart: |  @author  |   0m  0s |  The patch does not contain any @author tags.  |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 51s |  master passed  |
   | +1 :green_heart: |  compile  |   2m 29s |  master passed  |
   | +1 :green_heart: |  checkstyle  |   0m 37s |  master passed  |
   | +1 :green_heart: |  spotless  |   0m 44s |  branch has no errors when running spotless:check.  |
   | +1 :green_heart: |  spotbugs  |   1m 33s |  master passed  |
   ||| _ Patch Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 40s |  the patch passed  |
   | +1 :green_heart: |  compile  |   2m 27s |  the patch passed  |
   | +1 :green_heart: |  javac  |   2m 27s |  the patch passed  |
   | +1 :green_heart: |  checkstyle  |   0m 36s |  hbase-server: The patch generated 0 new + 0 unchanged - 1 fixed = 0 total (was 1)  |
   | +1 :green_heart: |  whitespace  |   0m  0s |  The patch has no whitespace issues.  |
   | +1 :green_heart: |  hadoopcheck  |  10m 20s |  Patch does not cause any errors with Hadoop 3.2.4 3.3.6.  |
   | +1 :green_heart: |  spotless  |   0m 41s |  patch has no errors when running spotless:check.  |
   | +1 :green_heart: |  spotbugs  |   1m 38s |  the patch passed  |
   ||| _ Other Tests _ |
   | +1 :green_heart: |  asflicense  |   0m 11s |  The patch does not generate ASF License warnings.  |
   |  |   |  33m  9s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/3/artifact/yetus-general-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
   | Optional Tests | dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile |
   | uname | Linux 539b05235ba0 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:21:23 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
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   | Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841793860

   :broken_heart: **-1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 32s |  Docker mode activated.  |
   | -0 :warning: |  yetus  |   0m  2s |  Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck  |
   ||| _ Prechecks _ |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 19s |  master passed  |
   | +1 :green_heart: |  compile  |   0m 42s |  master passed  |
   | +1 :green_heart: |  shadedjars  |   4m 48s |  branch has no errors when building our shaded downstream artifacts.  |
   | +1 :green_heart: |  javadoc  |   0m 25s |  master passed  |
   ||| _ Patch Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 27s |  the patch passed  |
   | +1 :green_heart: |  compile  |   0m 43s |  the patch passed  |
   | +1 :green_heart: |  javac  |   0m 43s |  the patch passed  |
   | +1 :green_heart: |  shadedjars  |   4m 48s |  patch has no errors when building our shaded downstream artifacts.  |
   | +1 :green_heart: |  javadoc  |   0m 24s |  the patch passed  |
   ||| _ Other Tests _ |
   | -1 :x: |  unit  | 237m  0s |  hbase-server in the patch failed.  |
   |  |   | 258m 36s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/2/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
   | Optional Tests | javac javadoc unit shadedjars compile |
   | uname | Linux f79662dda915 5.4.0-166-generic #183-Ubuntu SMP Mon Oct 2 11:28:33 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
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   | git revision | master / 25e9228e2c |
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   |  Test Results | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/2/testReport/ |
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   | modules | C: hbase-server U: hbase-server |
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   | versions | git=2.34.1 maven=3.8.6 |
   | Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
   
   
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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "bbeaudreault (via GitHub)" <gi...@apache.org>.
bbeaudreault merged PR #5561:
URL: https://github.com/apache/hbase/pull/5561


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Re: [PR] HBASE-28206 [JDK17] JVM crashes intermittently on aarch64 [hbase]

Posted by "Apache-HBase (via GitHub)" <gi...@apache.org>.
Apache-HBase commented on PR #5561:
URL: https://github.com/apache/hbase/pull/5561#issuecomment-1841437591

   :broken_heart: **-1 overall**
   
   
   
   
   
   
   | Vote | Subsystem | Runtime | Comment |
   |:----:|----------:|--------:|:--------|
   | +0 :ok: |  reexec  |   0m 38s |  Docker mode activated.  |
   ||| _ Prechecks _ |
   | +1 :green_heart: |  dupname  |   0m  0s |  No case conflicting files found.  |
   | +1 :green_heart: |  hbaseanti  |   0m  0s |  Patch does not have any anti-patterns.  |
   | +1 :green_heart: |  @author  |   0m  0s |  The patch does not contain any @author tags.  |
   ||| _ master Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 50s |  master passed  |
   | +1 :green_heart: |  compile  |   2m 28s |  master passed  |
   | +1 :green_heart: |  checkstyle  |   0m 34s |  master passed  |
   | +1 :green_heart: |  spotless  |   0m 45s |  branch has no errors when running spotless:check.  |
   | +1 :green_heart: |  spotbugs  |   1m 31s |  master passed  |
   ||| _ Patch Compile Tests _ |
   | +1 :green_heart: |  mvninstall  |   2m 41s |  the patch passed  |
   | +1 :green_heart: |  compile  |   2m 29s |  the patch passed  |
   | +1 :green_heart: |  javac  |   2m 29s |  the patch passed  |
   | -0 :warning: |  checkstyle  |   0m 35s |  hbase-server: The patch generated 7 new + 0 unchanged - 1 fixed = 7 total (was 1)  |
   | +1 :green_heart: |  whitespace  |   0m  0s |  The patch has no whitespace issues.  |
   | +1 :green_heart: |  hadoopcheck  |   9m 28s |  Patch does not cause any errors with Hadoop 3.2.4 3.3.6.  |
   | -1 :x: |  spotless  |   0m 21s |  patch has 34 errors when running spotless:check, run spotless:apply to fix.  |
   | +1 :green_heart: |  spotbugs  |   1m 39s |  the patch passed  |
   ||| _ Other Tests _ |
   | -1 :x: |  asflicense  |   0m 13s |  The patch generated 1 ASF License warnings.  |
   |  |   |  32m 20s |   |
   
   
   | Subsystem | Report/Notes |
   |----------:|:-------------|
   | Docker | ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/1/artifact/yetus-general-check/output/Dockerfile |
   | GITHUB PR | https://github.com/apache/hbase/pull/5561 |
   | Optional Tests | dupname asflicense javac spotbugs hadoopcheck hbaseanti spotless checkstyle compile |
   | uname | Linux c1a2f41f0783 5.4.0-163-generic #180-Ubuntu SMP Tue Sep 5 13:21:23 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux |
   | Build tool | maven |
   | Personality | dev-support/hbase-personality.sh |
   | git revision | master / 25e9228e2c |
   | Default Java | Eclipse Adoptium-11.0.17+8 |
   | checkstyle | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/1/artifact/yetus-general-check/output/diff-checkstyle-hbase-server.txt |
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   | asflicense | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/1/artifact/yetus-general-check/output/patch-asflicense-problems.txt |
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   | modules | C: hbase-server U: hbase-server |
   | Console output | https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5561/1/console |
   | versions | git=2.34.1 maven=3.8.6 spotbugs=4.7.3 |
   | Powered by | Apache Yetus 0.12.0 https://yetus.apache.org |
   
   
   This message was automatically generated.
   
   


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