[jira] [Commented] (CTAKES-474) CTakes help getting sign /symptoms

["Sean Finan (JIRA)" <ji...@apache.org>]

    [ https://issues.apache.org/jira/browse/CTAKES-474?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16728776#comment-16728776 ] 

Sean Finan commented on CTAKES-474:
-----------------------------------

ctakes does not have the capability to report parent concepts.

By "how can I access", do you mean using code or using some output file?

By code, you can use JCasUtil.select(..) and a class name.

[https://uima.apache.org/d/uimafit-current/api/org/apache/uima/fit/util/JCasUtil.html]

DiseaseDisorderMention, ProcedureMention, SignSymptomMention, MedicationEventMention, AnatomicalSiteMention.

> CTakes help getting sign /symptoms
> ----------------------------------
>
>                 Key: CTAKES-474
>                 URL: https://issues.apache.org/jira/browse/CTAKES-474
>             Project: cTAKES
>          Issue Type: Task
>          Components: ctakes-clinical-pipeline
>    Affects Versions: 4.0.0
>            Reporter: Tarnpreet Bhatti
>            Priority: Major
>         Attachments: cTAKES-Type-System-1.jpg
>
>
> Hi, I am using cTakes to analysis some clinical text. I have cTakes running using the temporal demo and building upon it. I am looking for a way to get the snowmedct concept associated with each umlsconcept that cTakes returns. Example, if cTakes returns preferred text="feelings" with  codingScheme="SNOMEDCT_US" and code="285854004" how can I get the parents of the snowmedct concept represented by the code. Also, how can I access individual event types highlighted in green in the attached image. Thanks.



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