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Posted to reviews@spark.apache.org by HyukjinKwon <gi...@git.apache.org> on 2017/12/18 00:27:41 UTC

[GitHub] spark pull request #20005: [DO-NOT-MERGE] Investigating SparkR test failure

GitHub user HyukjinKwon opened a pull request:

    https://github.com/apache/spark/pull/20005

    [DO-NOT-MERGE] Investigating SparkR test failure

    ## What changes were proposed in this pull request?
    
    Don't merge this. I would like to check few things. I am super busy for the rest of this month so I wouldn't make it shortly.
    
    Please keep investigating this if anyone is doing.
    
    ## How was this patch tested?
    
    N/A

You can merge this pull request into a Git repository by running:

    $ git pull https://github.com/HyukjinKwon/spark investigating-cran

Alternatively you can review and apply these changes as the patch at:

    https://github.com/apache/spark/pull/20005.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

    This closes #20005
    
----
commit 6646eb56431fd5cd54c0c6342fca69428a2d51e0
Author: hyukjinkwon <gu...@gmail.com>
Date:   2017-12-18T00:23:26Z

    R change

----


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Verified locally, this issue fixed. Let's wait for Jenkins.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    @viirya you are my hero.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Just checked it passes with R 3.1.1 in my local too!


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Merged build finished. Test FAILed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Oh, Thanks for cran sysadmin team's quick reply, they fixed that broken page.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Note: I've emailed to cran sysadmin team and asked them for help to fix the broken page.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    I've tried to investigate this and I think it is due to a wrongly formatted document at https://cran.r-project.org/src/contrib/PACKAGES.in:
    
    ```
    Package: alR
    X-CRAN-Comment: Archived again on 2017-12-15 as none of the errors (failure to install with clang and on Solaris, buffer overflows) were corrected.
    
    X-CRAN-History: Archived on 2017-12-01 as C++ errors (and segfaults) were not corrected despite reminders.
    	Unarchived on 2017-12-07.
    ```
    
    There is an additional breaking line here and it breaks the function `tools:::.check_package_CRAN_incoming`.


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[GitHub] spark pull request #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon closed the pull request at:

    https://github.com/apache/spark/pull/20005


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85046 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85046/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    cc @shivaram, @felixcheung and @falaki too FYI.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85033 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85033/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
     * This patch **fails SparkR unit tests**.
     * This patch merges cleanly.
     * This patch adds no public classes.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Nice thanks!
    



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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    retest this please.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85045 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85045/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Merged build finished. Test FAILed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Ok. tests passed. Looks good.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Merged build finished. Test PASSed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85045 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85045/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
     * This patch **fails due to an unknown error code, -9**.
     * This patch merges cleanly.
     * This patch adds no public classes.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    retest this please


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85046 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85046/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
     * This patch passes all tests.
     * This patch merges cleanly.
     * This patch adds no public classes.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Test FAILed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/85045/
    Test FAILed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    I see. Nice to get some helps. BTW, this also seems related with specific R version as well. I wasn't able to reproduce this with R 3.4.0 but I am able to reproduce this with R 3.1.1 (same as Jenkins').
    
    Probably, some corner cases were handled in `tools:::.check_package_CRAN_incoming` in the upper version.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Test FAILed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/85033/
    Test FAILed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by sameeragarwal <gi...@git.apache.org>.
Github user sameeragarwal commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Thanks @viirya!


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    I think we can safely resolve https://issues.apache.org/jira/browse/SPARK-22812. Let me leave this PR closed as well. Thanks to @viirya and CRAN sysadmin team.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Test PASSed.
    Refer to this link for build results (access rights to CI server needed): 
    https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/85046/
    Test PASSed.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    **[Test build #85033 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85033/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    retest this please.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    I use R version 3.2.3 and I can reproduce this too.


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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure

Posted by falaki <gi...@git.apache.org>.
Github user falaki commented on the issue:

    https://github.com/apache/spark/pull/20005
  
    Thank you guys.


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