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Posted to reviews@spark.apache.org by HyukjinKwon <gi...@git.apache.org> on 2017/12/18 00:27:41 UTC
[GitHub] spark pull request #20005: [DO-NOT-MERGE] Investigating SparkR test failure
GitHub user HyukjinKwon opened a pull request:
https://github.com/apache/spark/pull/20005
[DO-NOT-MERGE] Investigating SparkR test failure
## What changes were proposed in this pull request?
Don't merge this. I would like to check few things. I am super busy for the rest of this month so I wouldn't make it shortly.
Please keep investigating this if anyone is doing.
## How was this patch tested?
N/A
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/HyukjinKwon/spark investigating-cran
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/20005.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #20005
----
commit 6646eb56431fd5cd54c0c6342fca69428a2d51e0
Author: hyukjinkwon <gu...@gmail.com>
Date: 2017-12-18T00:23:26Z
R change
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
Verified locally, this issue fixed. Let's wait for Jenkins.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
@viirya you are my hero.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
Just checked it passes with R 3.1.1 in my local too!
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Merged build finished. Test FAILed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
Oh, Thanks for cran sysadmin team's quick reply, they fixed that broken page.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
Note: I've emailed to cran sysadmin team and asked them for help to fix the broken page.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
I've tried to investigate this and I think it is due to a wrongly formatted document at https://cran.r-project.org/src/contrib/PACKAGES.in:
```
Package: alR
X-CRAN-Comment: Archived again on 2017-12-15 as none of the errors (failure to install with clang and on Solaris, buffer overflows) were corrected.
X-CRAN-History: Archived on 2017-12-01 as C++ errors (and segfaults) were not corrected despite reminders.
Unarchived on 2017-12-07.
```
There is an additional breaking line here and it breaks the function `tools:::.check_package_CRAN_incoming`.
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[GitHub] spark pull request #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon closed the pull request at:
https://github.com/apache/spark/pull/20005
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85046 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85046/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
cc @shivaram, @felixcheung and @falaki too FYI.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85033 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85033/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
* This patch **fails SparkR unit tests**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/20005
Nice thanks!
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
retest this please.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85045 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85045/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Merged build finished. Test FAILed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
Ok. tests passed. Looks good.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Merged build finished. Test PASSed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85045 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85045/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
* This patch **fails due to an unknown error code, -9**.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
retest this please
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85046 has finished](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85046/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
* This patch passes all tests.
* This patch merges cleanly.
* This patch adds no public classes.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/85045/
Test FAILed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
I see. Nice to get some helps. BTW, this also seems related with specific R version as well. I wasn't able to reproduce this with R 3.4.0 but I am able to reproduce this with R 3.1.1 (same as Jenkins').
Probably, some corner cases were handled in `tools:::.check_package_CRAN_incoming` in the upper version.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Test FAILed.
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https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/85033/
Test FAILed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by sameeragarwal <gi...@git.apache.org>.
Github user sameeragarwal commented on the issue:
https://github.com/apache/spark/pull/20005
Thanks @viirya!
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by HyukjinKwon <gi...@git.apache.org>.
Github user HyukjinKwon commented on the issue:
https://github.com/apache/spark/pull/20005
I think we can safely resolve https://issues.apache.org/jira/browse/SPARK-22812. Let me leave this PR closed as well. Thanks to @viirya and CRAN sysadmin team.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by AmplabJenkins <gi...@git.apache.org>.
Github user AmplabJenkins commented on the issue:
https://github.com/apache/spark/pull/20005
Test PASSed.
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Test PASSed.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by SparkQA <gi...@git.apache.org>.
Github user SparkQA commented on the issue:
https://github.com/apache/spark/pull/20005
**[Test build #85033 has started](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/85033/testReport)** for PR 20005 at commit [`6646eb5`](https://github.com/apache/spark/commit/6646eb56431fd5cd54c0c6342fca69428a2d51e0).
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
retest this please.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by viirya <gi...@git.apache.org>.
Github user viirya commented on the issue:
https://github.com/apache/spark/pull/20005
I use R version 3.2.3 and I can reproduce this too.
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[GitHub] spark issue #20005: [DO-NOT-MERGE] Investigating SparkR test failure
Posted by falaki <gi...@git.apache.org>.
Github user falaki commented on the issue:
https://github.com/apache/spark/pull/20005
Thank you guys.
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