[jira] [Created] (ARROW-9932) R package fails to install on Ubuntu 14

["Ofek Shilon (Jira)" <ji...@apache.org>]

Ofek Shilon created ARROW-9932:
----------------------------------

             Summary: R package fails to install on Ubuntu 14
                 Key: ARROW-9932
                 URL: https://issues.apache.org/jira/browse/ARROW-9932
             Project: Apache Arrow
          Issue Type: Bug
          Components: R
    Affects Versions: 1.0.1
         Environment: R version 3.4.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
            Reporter: Ofek Shilon


1. From R (3.4) prompt, we run

{{> install.packages("arrow")}}

and it seems to succeed.

2. Next we run:

{{> arrow::install_arrow()}}

This is the full output:

{{Installing package into '/opt/R-3.4.0.mkl/library'}}
{{(as 'lib' is unspecified)}}
{{trying URL 'https://cloud.r-project.org/src/contrib/arrow_1.0.1.tar.gz'}}
{{Content type 'application/x-gzip' length 274865 bytes (268 KB)}}
{{==================================================}}
{{downloaded 268 KBinstalling *source* package 'arrow' ...}}
{{** package 'arrow' successfully unpacked and MD5 sums checked}}
{{*** No C++ binaries found for ubuntu-14.04}}
{{*** Successfully retrieved C++ source}}
{{*** Building C++ libraries}}
{{**** cmake}}
{{Error in dQuote(env_var_list, FALSE) : unused argument (FALSE)}}
{{Calls: build_libarrow -> paste}}
{{Execution halted}}
{{------------------------- NOTE ---------------------------}}
{{After installation, please run arrow::install_arrow()}}
{{for help installing required runtime libraries}}
{{---------------------------------------------------------}}
{{** libs}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array.cpp -o array.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array_from_vector.cpp -o array_from_vector.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c array_to_vector.cpp -o array_to_vector.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c arraydata.cpp -o arraydata.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c arrowExports.cpp -o arrowExports.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c buffer.cpp -o buffer.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c chunkedarray.cpp -o chunkedarray.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c compression.cpp -o compression.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c compute.cpp -o compute.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c csv.cpp -o csv.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c dataset.cpp -o dataset.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c datatype.cpp -o datatype.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c expression.cpp -o expression.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c feather.cpp -o feather.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c field.cpp -o field.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c filesystem.cpp -o filesystem.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c imports.cpp -o imports.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c io.cpp -o io.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c json.cpp -o json.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c memorypool.cpp -o memorypool.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c message.cpp -o message.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c parquet.cpp -o parquet.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c py-to-r.cpp -o py-to-r.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatch.cpp -o recordbatch.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatchreader.cpp -o recordbatchreader.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c recordbatchwriter.cpp -o recordbatchwriter.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c scalar.cpp -o scalar.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c schema.cpp -o schema.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c symbols.cpp -o symbols.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c table.cpp -o table.o}}{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG -I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic -march=x86-64 -O3 -c threadpool.cpp -o threadpool.o}}{{g++ -std=gnu++0x -shared -L/opt/R-3.4.0.mkl/lib64/R/lib -L/usr/local/lib64 -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/opt/R-3.4.0.mkl/lib64/R/lib -lR}}
{{installing to /opt/R-3.4.0.mkl/library/arrow/libs}}{{** R}}
{{** inst}}
{{** preparing package for lazy loading}}
{{** help}}
{{*** installing help indices}}
{{** building package indices}}
{{** installing vignettes}}{{** testing if installed package can be loaded}}
{{* DONE (arrow)}}{{The downloaded source packages are inThe downloaded source packages are in '/tmp/RtmppBCBzR/downloaded_packages'}}{{Please restart R to use the 'arrow' package.}}

3. We restart R, and run -

{{> arrow::arrow_available()}}
{{*[1] FALSE*}}

 

And indeed all arrow functionality fails.
> x <- arrow::Table$create(data.frame(a=1:2))  Error in Table__from_dots(dots, schema) : 
  Cannot call Table__from_dots(). Please use arrow::install_arrow() to install required runtime libraries.



--
This message was sent by Atlassian Jira
(v8.3.4#803005)