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Posted to dev@ignite.apache.org by "Konstantin Boudnik (JIRA)" <ji...@apache.org> on 2015/02/26 01:20:04 UTC
[jira] [Comment Edited] (IGNITE-218) Wrong staging permissions
while running MR job under hadoop accelerator
[ https://issues.apache.org/jira/browse/IGNITE-218?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14337318#comment-14337318 ]
Konstantin Boudnik edited comment on IGNITE-218 at 2/26/15 12:19 AM:
---------------------------------------------------------------------
It is quite possible the configuration issue. Here's what I have done:
- added
{code}
<property name="secondaryFileSystem">
<bean class="org.gridgain.grid.kernal.ggfs.hadoop.GridGgfsHadoopFileSystemWrapper">
<constructor-arg value="hdfs://vmhost05-hbase1.bdva.wandisco.com:8020"/>
<constructor-arg value="/etc/hadoop/conf/hdfs-site.xml"/>
</bean>
</property>
{code}
inside
{code}
<property name="ggfsConfiguration">
<list>
<bean class="org.gridgain.grid.ggfs.GridGgfsConfiguration" parent="ggfsCfgBase">
{code}
And now I can list the HDFS using gridgain-hadoop client configuration, and put files into the file system. But once an MR job is ran I see that reported issue.
The reason I did the configuration above instead of one explained here http://hadoop.gridgain.org/latest/Configuration is that I couldn't make that latter work ;( Perhaps, it's my inability to read the documentation. But nodes refuse to start and log files don't have any information that's might relevant to the issue. By running {{ggstart.sh}} manually I found that
{noformat}
[root@vmhost05-hbase1 conf]# /usr/lib/gridgain-hadoop/bin/ggstart.sh
class org.gridgain.grid.GridException: Failed to instantiate Spring XML application context [springUrl=file:/usr/lib/gridgain-hadoop/config/default-
config.xml, err=Error creating bean with name 'grid.cfg' defined in URL [file:/usr/lib/gridgain-hadoop/config/default-config.xml]: Cannot create inn
er bean 'org.gridgain.grid.ggfs.GridGgfsConfiguration#29e700f6' of type [org.gridgain.grid.ggfs.GridGgfsConfiguration] while setting bean property '
ggfsConfiguration' with key [0]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.gri
dgain.grid.ggfs.GridGgfsConfiguration#29e700f6' defined in URL [file:/usr/lib/gridgain-hadoop/config/default-config.xml]: Error setting property val
ues; nested exception is org.springframework.beans.NotWritablePropertyException: Invalid property 'secondaryHadoopFileSystemUri' of bean class [org.
gridgain.grid.ggfs.GridGgfsConfiguration]: Bean property 'secondaryHadoopFileSystemUri' is not writable or has an invalid setter method. Does the pa
rameter type of the setter match the return type of the getter?]
For more information see:
Troubleshooting: http://bit.ly/GridGain-Troubleshooting
Documentation Center: http://bit.ly/GridGain-Documentation
at org.gridgain.grid.kernal.processors.spring.GridSpringProcessorImpl.loadConfigurations(GridSpringProcessorImpl.java:98)
at org.gridgain.grid.kernal.GridGainEx.loadConfigurations(GridGainEx.java:560)
at org.gridgain.grid.kernal.GridGainEx.start(GridGainEx.java:739)
at org.gridgain.grid.kernal.GridGainEx.start(GridGainEx.java:677)
at org.gridgain.grid.kernal.GridGainEx.start(GridGainEx.java:524)
at org.gridgain.grid.kernal.GridGainEx.start(GridGainEx.java:494)
at org.gridgain.grid.GridGain.start(GridGain.java:314)
at org.gridgain.grid.startup.cmdline.GridCommandLineStartup.main(GridCommandLineStartup.java:293)
{noformat}
Perhaps it is because I am using config that isn't compatible with an older version? Anything else?
Another issue: when the underlying HDFS NN is in the safe mode, the GGFS error message is wrong:
{{put: class org.gridgain.grid.ggfs.GridGgfsInvalidHdfsVersionException: HDFS version you are connecting to differs from local version.}}
was (Author: cos):
It is quite possible the configuration issue. Here's what I have done:
- added
{code}
<property name="secondaryFileSystem">
<bean class="org.gridgain.grid.kernal.ggfs.hadoop.GridGgfsHadoopFileSystemWrapper">
<constructor-arg value="hdfs://vmhost05-hbase1.bdva.wandisco.com:8020"/>
<constructor-arg value="/etc/hadoop/conf/hdfs-site.xml"/>
</bean>
</property>
{code}
inside
{code}
<property name="ggfsConfiguration">
<list>
<bean class="org.gridgain.grid.ggfs.GridGgfsConfiguration" parent="ggfsCfgBase">
{code}
And now I can list the HDFS using gridgain-hadoop client configuration, and put files into the file system. But once an MR job is ran I see that reported issue.
The reason I did the configuration above instead of one explained here http://hadoop.gridgain.org/latest/Configuration is that I couldn't make that latter work ;( Perhaps, it's my inability to read the documentation. But nodes refuse to start and log files don't have any information that's might relevant to the issue.
Another issue: when the underlying HDFS NN is in the safe mode, the GGFS error message is wrong:
{{put: class org.gridgain.grid.ggfs.GridGgfsInvalidHdfsVersionException: HDFS version you are connecting to differs from local version.}}
> Wrong staging permissions while running MR job under hadoop accelerator
> -----------------------------------------------------------------------
>
> Key: IGNITE-218
> URL: https://issues.apache.org/jira/browse/IGNITE-218
> Project: Ignite
> Issue Type: Bug
> Components: hadoop
> Affects Versions: sprint-1
> Environment: Hadoop 2.4.1
> gridgain-hadoop-6.5.6 (Bigtop trunk)
> Reporter: Konstantin Boudnik
> Assignee: Ivan Veselovsky
> Fix For: sprint-2
>
>
> I am trying to run an MR example on gridgain-hadoop setup in Bigtop. The ggfs is configured to be backed by HDFS with
> {code}
> <property name="secondaryFileSystem">
> <bean class="org.gridgain.grid.kernal.ggfs.hadoop.GridGgfsHadoopFileSystemWrapper">
> <constructor-arg value="hdfs://vmhost05-hbase1.bdva.wandisco.com:8020"/>
> <constructor-arg value="/etc/hadoop/conf/hdfs-site.xml"/>
> </bean>
> </property>
> {code}
> set for {{ggfsConfiguration}}
> While all usual filesystem operations work properly, running an MR job produces the following exception in the beginning of the run
> {noformat}
> HADOOP_CONF_DIR=/etc/hadoop/gridgain.client.conf hadoop jar /usr/lib/hadoop-mapreduce/hadoop-mapreduce-examples.jar pi 2 2
> Number of Maps = 2
> Samples per Map = 2
> Wrote input for Map #0
> Wrote input for Map #1
> Starting Job
> java.io.IOException: The ownership on the staging directory /tmp/hadoop-yarn/staging/root/.staging is not as expected. It is owned by gridgain. The directory must be owned by the submitter root or by root
> at org.apache.hadoop.mapreduce.JobSubmissionFiles.getStagingDir(JobSubmissionFiles.java:112)
> at org.apache.hadoop.mapreduce.JobSubmitter.submitJobInternal(JobSubmitter.java:348)
> at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1285)
> at org.apache.hadoop.mapreduce.Job$10.run(Job.java:1282)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1556)
> at org.apache.hadoop.mapreduce.Job.submit(Job.java:1282)
> at org.apache.hadoop.mapreduce.Job.waitForCompletion(Job.java:1303)
> at org.apache.hadoop.examples.QuasiMonteCarlo.estimatePi(QuasiMonteCarlo.java:306)
> at org.apache.hadoop.examples.QuasiMonteCarlo.run(QuasiMonteCarlo.java:354)
> at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:70)
> at org.apache.hadoop.examples.QuasiMonteCarlo.main(QuasiMonteCarlo.java:363)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.hadoop.util.ProgramDriver$ProgramDescription.invoke(ProgramDriver.java:72)
> at org.apache.hadoop.util.ProgramDriver.run(ProgramDriver.java:145)
> at org.apache.hadoop.examples.ExampleDriver.main(ExampleDriver.java:74)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.hadoop.util.RunJar.main(RunJar.java:212)
> {noformat}
> However the permissions seem to be correct.
> {noformat}
> [root@vmhost05-hbase2 gridgain.client.conf]# sudo -u hdfs hadoop fs -ls /tmp/hadoop-yarn/staging/root Found 1 items
> drwx------ - root root 0 2015-02-10 19:31 /tmp/hadoop-yarn/staging/root/.staging
> {noformat}
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