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Posted to issues@spark.apache.org by "Tzach Zohar (JIRA)" <ji...@apache.org> on 2016/09/16 10:11:20 UTC
[jira] [Commented] (SPARK-13210) NPE in Sort
[ https://issues.apache.org/jira/browse/SPARK-13210?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15495921#comment-15495921 ]
Tzach Zohar commented on SPARK-13210:
-------------------------------------
I've just seen this happening on Spark 1.6.2 - very similar stack trace (line number changed slightly, but same stack).
I'm guessing fix wasn't ported to 1.6.1 eventually?
If so - maybe 1.6.* versions should be added to "affected versions"?
{code:none}
java.lang.NullPointerException
at org.apache.spark.memory.TaskMemoryManager.getPage(TaskMemoryManager.java:351)
at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter$SortComparator.compare(UnsafeInMemorySorter.java:56)
at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter$SortComparator.compare(UnsafeInMemorySorter.java:37)
at org.apache.spark.util.collection.TimSort.countRunAndMakeAscending(TimSort.java:270)
at org.apache.spark.util.collection.TimSort.sort(TimSort.java:142)
at org.apache.spark.util.collection.Sorter.sort(Sorter.scala:37)
at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter.getSortedIterator(UnsafeInMemorySorter.java:235)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.spill(UnsafeExternalSorter.java:186)
at org.apache.spark.memory.TaskMemoryManager.acquireExecutionMemory(TaskMemoryManager.java:175)
at org.apache.spark.memory.TaskMemoryManager.allocatePage(TaskMemoryManager.java:249)
at org.apache.spark.memory.MemoryConsumer.allocateArray(MemoryConsumer.java:83)
at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter.reset(UnsafeInMemorySorter.java:122)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.spill(UnsafeExternalSorter.java:201)
at org.apache.spark.memory.TaskMemoryManager.acquireExecutionMemory(TaskMemoryManager.java:175)
at org.apache.spark.memory.TaskMemoryManager.allocatePage(TaskMemoryManager.java:249)
at org.apache.spark.memory.MemoryConsumer.allocatePage(MemoryConsumer.java:112)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.acquireNewPageIfNecessary(UnsafeExternalSorter.java:332)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.insertKVRecord(UnsafeExternalSorter.java:373)
at org.apache.spark.sql.execution.UnsafeKVExternalSorter.insertKV(UnsafeKVExternalSorter.java:139)
at org.apache.spark.sql.execution.datasources.DynamicPartitionWriterContainer$$anonfun$writeRows$4.apply$mcV$sp(WriterContainer.scala:377)
at org.apache.spark.sql.execution.datasources.DynamicPartitionWriterContainer$$anonfun$writeRows$4.apply(WriterContainer.scala:343)
at org.apache.spark.sql.execution.datasources.DynamicPartitionWriterContainer$$anonfun$writeRows$4.apply(WriterContainer.scala:343)
at org.apache.spark.util.Utils$.tryWithSafeFinallyAndFailureCallbacks(Utils.scala:1277)
at org.apache.spark.sql.execution.datasources.DynamicPartitionWriterContainer.writeRows(WriterContainer.scala:409)
... 8 more
{code}
> NPE in Sort
> -----------
>
> Key: SPARK-13210
> URL: https://issues.apache.org/jira/browse/SPARK-13210
> Project: Spark
> Issue Type: Bug
> Components: SQL
> Affects Versions: 2.0.0
> Reporter: Davies Liu
> Assignee: Davies Liu
> Priority: Critical
> Fix For: 2.0.0
>
>
> When run TPCDS query Q78 with scale 10:
> {code}
> 16/02/04 22:39:09 ERROR Executor: Managed memory leak detected; size = 268435456 bytes, TID = 143
> 16/02/04 22:39:09 ERROR Executor: Exception in task 0.0 in stage 47.0 (TID 143)
> java.lang.NullPointerException
> at org.apache.spark.memory.TaskMemoryManager.getPage(TaskMemoryManager.java:333)
> at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter$SortComparator.compare(UnsafeInMemorySorter.java:60)
> at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter$SortComparator.compare(UnsafeInMemorySorter.java:39)
> at org.apache.spark.util.collection.TimSort.countRunAndMakeAscending(TimSort.java:270)
> at org.apache.spark.util.collection.TimSort.sort(TimSort.java:142)
> at org.apache.spark.util.collection.Sorter.sort(Sorter.scala:37)
> at org.apache.spark.util.collection.unsafe.sort.UnsafeInMemorySorter.getSortedIterator(UnsafeInMemorySorter.java:239)
> at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.getSortedIterator(UnsafeExternalSorter.java:415)
> at org.apache.spark.sql.execution.UnsafeExternalRowSorter.sort(UnsafeExternalRowSorter.java:116)
> at org.apache.spark.sql.execution.UnsafeExternalRowSorter.sort(UnsafeExternalRowSorter.java:168)
> at org.apache.spark.sql.execution.Sort$$anonfun$1.apply(Sort.scala:87)
> at org.apache.spark.sql.execution.Sort$$anonfun$1.apply(Sort.scala:60)
> at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$23.apply(RDD.scala:735)
> at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsInternal$1$$anonfun$apply$23.apply(RDD.scala:735)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
> at org.apache.spark.rdd.ZippedPartitionsRDD2.compute(ZippedPartitionsRDD.scala:88)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:313)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:277)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:77)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:45)
> at org.apache.spark.scheduler.Task.run(Task.scala:81)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> {code}
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