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Posted to dev@airavata.apache.org by Pedro da Silveira <pe...@gmail.com> on 2013/02/06 01:49:36 UTC
Submit task to Lonestar using my Xsede account instead of using ogce
Hi Dev,
I am trying to submit a workflow using my Xsede account using Xbaya. It has
worked successfully using "ogce" account.
I changed the file "airavata-server.properties" to use my Xsede portal
account.
myproxy.user=pedrorcs
myproxy.pass=******
I also changed the Application Service to use a different settings like my
user $SCRATCH directory.
Executable path:
/scratch/00091/tg458470/executePwscf.sh
Scratch Working directory:
/scratch/00091/tg458470/Phonon
I set the workflow to run then I setup correctly the local path to input
files on my desktop.
All input files got transferred correctly, but the job were never not
submitted to PBS.
Can someone please clarify if I am doing something wrong?
This is the log on Airavata-Server:
=================================================================================================================
[INFO] Experiment launched
:SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
[INFO] -----DATA-----
[INFO] Start scheduling
[INFO] -----END DATA-----
[INFO] Searching registry for some deployed application hosts
[INFO] Found service on: lonestar4.tacc.teragrid.org
[INFO] Found service on: lonestar4.tacc.teragrid.org
[INFO] -----DATA-----
[INFO] Finish scheduling
[INFO] -----END DATA-----
null
[INFO] Proxy file renewed to
/tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
pedrorcs with 3600 lifetime.
[INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
=//scratch/00091/tg458470/Phonon
[INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
=//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
[INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
=//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
[INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
=//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
[INFO] The remote file is
///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
[INFO] Uploading file
[INFO] Upload file
to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
is done
org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
[INFO] The remote file is
///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
[INFO] Uploading file
[INFO] Upload file
to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
is done
org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
[INFO] The remote file is
///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
[INFO] Uploading file
[INFO] Upload file
to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
is done
[INFO] -----DATA-----
[INFO] Start execution
[INFO] -----END DATA-----
org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
[INFO] -----DATA-----
[INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL = &(
queue = "development" )( stdout =
"/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
)( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
)( stderr =
"/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
)( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )( project =
"TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
"/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
) ( "outputData"
"/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
) )( proxy_timeout = "1" )( arguments =
"///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
"///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
"///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
)( directory =
"/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
)( maxmemory = "2048" ) working directory =
/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper Endpoint
= gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
[INFO] -----END DATA-----
=================================================================================================================
Thank you so much,
Pedro da Silveira
Re: Submit task to Lonestar using my Xsede account instead of using ogce
Posted by Pedro da Silveira <pe...@gmail.com>.
Raminder,
I changed the permission over my script for the second application service
and it worked fine.
Thank you,
On Wed, Feb 6, 2013 at 4:08 PM, Raminder Singh <ra...@gmail.com>wrote:
> According to Gram user guide [1], executable file permission does not
> allow execution. This guide can help you with gram error codes.
>
> Thanks
> Raminder
>
> 1.
> http://www.globus.org/toolkit/docs/4.0/execution/prewsgram/user-index.html
>
>
> On Feb 6, 2013, at 4:52 PM, Pedro da Silveira wrote:
>
> > Hi Raminder,
> >
> > I tested the task submission again. My workflow has 2 application
> services
> > and 4 inputs total. Those 2 tasks run in less than 5 minutes, it is a
> just
> > a test.
> > The first application services ran successfully (File transfer and job),
> > but the second application services didn't. The second application
> services
> > got the files transfer correctly, but did not submit the task to PBS. The
> > Airavata server was constantly printing "Job Error Code: 72".
> > Do you know what could possibly cause this message?
> >
> > This is the Airavata-Server log messages:
> >
> > [INFO] -----END DATA-----
> > [INFO] Status is zero
> > [INFO] Status of job
> >
> https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
> > [INFO] -----DATA-----
> > [INFO] Status of job
> >
> https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
> > [INFO] -----END DATA-----
> > [INFO] Job Error Code: 72
> > [ERROR] Context passed was NULL.
> > java.lang.RuntimeException: Context passed was NULL.
> > at
> >
> org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
> > at
> >
> org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
> > at
> >
> org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
> > at
> >
> org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
> > at
> >
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225)
> > at
> >
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> > at
> >
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> > at
> >
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> > at java.lang.Thread.run(Thread.java:680)
> > [INFO] -----DATA-----
> > [INFO] Job Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > [INFO] -----END DATA-----
> > [ERROR] Job Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol
> > : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > at
> >
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> > at
> >
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> > at
> >
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> > at
> >
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> > at java.lang.Thread.run(Thread.java:680)
> > Caused by: java.lang.Exception: Job Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > ... 12 more
> > Exception in thread "Thread-67"
> > org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException:
> > org.apache.airavata.workflow.model.exceptions.WorkflowException: Job
> > Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> > at java.lang.Thread.run(Thread.java:680)
> > Caused by:
> org.apache.airavata.workflow.model.exceptions.WorkflowException:
> > Job Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > at
> >
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> > at
> >
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> > ... 3 more
> > Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault:
> Job
> > Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > at
> >
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> > at
> >
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> > at
> >
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> > at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> > at
> >
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> > ... 7 more
> > Caused by: java.lang.Exception: Job Protocol : https
> > Host name : gridftp1.ls4.tacc.utexas.edu
> > Port number : 50383
> > Url path : 16289984330111623786/8943296923859958664/
> > User : null
> > Pwd : null
> > on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> > ... 12 more
> >
> >
> > Thank you,
> >
> >
> >
> >
> >
> > On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh <raminderjsingh@gmail.com
> >wrote:
> >
> >> Hi Pedro,
> >>
> >> Can you check space in home directory of your account on Lonestar? I
> have
> >> seen such problem if you cross disk quota. Gram does not give any error
> >> and job does not go into queue. If quota is fine then we need to debug
> more.
> >>
> >> Thanks
> >> Raminder
> >>
> >> On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:
> >>
> >>> Hi Dev,
> >>>
> >>> I am trying to submit a workflow using my Xsede account using Xbaya. It
> >> has
> >>> worked successfully using "ogce" account.
> >>> I changed the file "airavata-server.properties" to use my Xsede portal
> >>> account.
> >>>
> >>> myproxy.user=pedrorcs
> >>> myproxy.pass=******
> >>>
> >>> I also changed the Application Service to use a different settings like
> >> my
> >>> user $SCRATCH directory.
> >>>
> >>> Executable path:
> >>> /scratch/00091/tg458470/executePwscf.sh
> >>>
> >>> Scratch Working directory:
> >>> /scratch/00091/tg458470/Phonon
> >>>
> >>> I set the workflow to run then I setup correctly the local path to
> input
> >>> files on my desktop.
> >>> All input files got transferred correctly, but the job were never not
> >>> submitted to PBS.
> >>> Can someone please clarify if I am doing something wrong?
> >>>
> >>> This is the log on Airavata-Server:
> >>>
> >>>
> >>
> =================================================================================================================
> >>> [INFO] Experiment launched
> >>> :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
> >>> [INFO] -----DATA-----
> >>> [INFO] Start scheduling
> >>> [INFO] -----END DATA-----
> >>> [INFO] Searching registry for some deployed application hosts
> >>> [INFO] Found service on: lonestar4.tacc.teragrid.org
> >>> [INFO] Found service on: lonestar4.tacc.teragrid.org
> >>> [INFO] -----DATA-----
> >>> [INFO] Finish scheduling
> >>> [INFO] -----END DATA-----
> >>> null
> >>> [INFO] Proxy file renewed to
> >>> /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
> >>> pedrorcs with 3600 lifetime.
> >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >>> =//scratch/00091/tg458470/Phonon
> >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >>>
> >>
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >>>
> >>
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
> >>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >>>
> >>
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
> >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> >>> [INFO] The remote file is
> >>>
> >>
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> >>> [INFO] Uploading file
> >>> [INFO] Upload file
> >>>
> >>
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> >>> is done
> >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> >>> [INFO] The remote file is
> >>>
> >>
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> >>> [INFO] Uploading file
> >>> [INFO] Upload file
> >>>
> >>
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> >>> is done
> >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> >>> [INFO] The remote file is
> >>>
> >>
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> >>> [INFO] Uploading file
> >>> [INFO] Upload file
> >>>
> >>
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> >>> is done
> >>> [INFO] -----DATA-----
> >>> [INFO] Start execution
> >>> [INFO] -----END DATA-----
> >>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> >>> [INFO] -----DATA-----
> >>> [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL
> =
> >> &(
> >>> queue = "development" )( stdout =
> >>>
> >>
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
> >>> )( count = "12" )( executable =
> "/scratch/00091/tg458470/executePwscf.sh"
> >>> )( stderr =
> >>>
> >>
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
> >>> )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )(
> >> project =
> >>> "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
> >>>
> >>
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
> >>> ) ( "outputData"
> >>>
> >>
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
> >>> ) )( proxy_timeout = "1" )( arguments =
> >>>
> >>
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
> >>>
> >>
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
> >>>
> >>
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
> >>> )( directory =
> >>>
> >>
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
> >>> )( maxmemory = "2048" ) working directory =
> >>>
> >>
> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> >>> temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper
> >> Endpoint
> >>> = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> >>> [INFO] -----END DATA-----
> >>>
> >>
> =================================================================================================================
> >>>
> >>>
> >>> Thank you so much,
> >>>
> >>>
> >>> Pedro da Silveira
> >>
> >>
>
>
Re: Submit task to Lonestar using my Xsede account instead of using ogce
Posted by Raminder Singh <ra...@gmail.com>.
According to Gram user guide [1], executable file permission does not allow execution. This guide can help you with gram error codes.
Thanks
Raminder
1. http://www.globus.org/toolkit/docs/4.0/execution/prewsgram/user-index.html
On Feb 6, 2013, at 4:52 PM, Pedro da Silveira wrote:
> Hi Raminder,
>
> I tested the task submission again. My workflow has 2 application services
> and 4 inputs total. Those 2 tasks run in less than 5 minutes, it is a just
> a test.
> The first application services ran successfully (File transfer and job),
> but the second application services didn't. The second application services
> got the files transfer correctly, but did not submit the task to PBS. The
> Airavata server was constantly printing "Job Error Code: 72".
> Do you know what could possibly cause this message?
>
> This is the Airavata-Server log messages:
>
> [INFO] -----END DATA-----
> [INFO] Status is zero
> [INFO] Status of job
> https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
> [INFO] -----DATA-----
> [INFO] Status of job
> https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
> [INFO] -----END DATA-----
> [INFO] Job Error Code: 72
> [ERROR] Context passed was NULL.
> java.lang.RuntimeException: Context passed was NULL.
> at
> org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
> at
> org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
> at
> org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
> at
> org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
> at
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225)
> at
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> [INFO] -----DATA-----
> [INFO] Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> [INFO] -----END DATA-----
> [ERROR] Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol
> : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> at
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> at
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> Caused by: java.lang.Exception: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> ... 12 more
> Exception in thread "Thread-67"
> org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException:
> org.apache.airavata.workflow.model.exceptions.WorkflowException: Job
> Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException:
> Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> at
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at
> org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> ... 3 more
> Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job
> Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> at
> org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> at
> org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at
> org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at
> org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> ... 7 more
> Caused by: java.lang.Exception: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50383
> Url path : 16289984330111623786/8943296923859958664/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 72
> ... 12 more
>
>
> Thank you,
>
>
>
>
>
> On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh <ra...@gmail.com>wrote:
>
>> Hi Pedro,
>>
>> Can you check space in home directory of your account on Lonestar? I have
>> seen such problem if you cross disk quota. Gram does not give any error
>> and job does not go into queue. If quota is fine then we need to debug more.
>>
>> Thanks
>> Raminder
>>
>> On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:
>>
>>> Hi Dev,
>>>
>>> I am trying to submit a workflow using my Xsede account using Xbaya. It
>> has
>>> worked successfully using "ogce" account.
>>> I changed the file "airavata-server.properties" to use my Xsede portal
>>> account.
>>>
>>> myproxy.user=pedrorcs
>>> myproxy.pass=******
>>>
>>> I also changed the Application Service to use a different settings like
>> my
>>> user $SCRATCH directory.
>>>
>>> Executable path:
>>> /scratch/00091/tg458470/executePwscf.sh
>>>
>>> Scratch Working directory:
>>> /scratch/00091/tg458470/Phonon
>>>
>>> I set the workflow to run then I setup correctly the local path to input
>>> files on my desktop.
>>> All input files got transferred correctly, but the job were never not
>>> submitted to PBS.
>>> Can someone please clarify if I am doing something wrong?
>>>
>>> This is the log on Airavata-Server:
>>>
>>>
>> =================================================================================================================
>>> [INFO] Experiment launched
>>> :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
>>> [INFO] -----DATA-----
>>> [INFO] Start scheduling
>>> [INFO] -----END DATA-----
>>> [INFO] Searching registry for some deployed application hosts
>>> [INFO] Found service on: lonestar4.tacc.teragrid.org
>>> [INFO] Found service on: lonestar4.tacc.teragrid.org
>>> [INFO] -----DATA-----
>>> [INFO] Finish scheduling
>>> [INFO] -----END DATA-----
>>> null
>>> [INFO] Proxy file renewed to
>>> /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
>>> pedrorcs with 3600 lifetime.
>>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
>>> =//scratch/00091/tg458470/Phonon
>>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
>>>
>> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
>>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
>>>
>> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
>>> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
>>>
>> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
>>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
>>> [INFO] The remote file is
>>>
>> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
>>> [INFO] Uploading file
>>> [INFO] Upload file
>>>
>> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
>>> is done
>>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
>>> [INFO] The remote file is
>>>
>> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
>>> [INFO] Uploading file
>>> [INFO] Upload file
>>>
>> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
>>> is done
>>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
>>> [INFO] The remote file is
>>>
>> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
>>> [INFO] Uploading file
>>> [INFO] Upload file
>>>
>> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
>>> is done
>>> [INFO] -----DATA-----
>>> [INFO] Start execution
>>> [INFO] -----END DATA-----
>>> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
>>> [INFO] -----DATA-----
>>> [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL =
>> &(
>>> queue = "development" )( stdout =
>>>
>> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
>>> )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
>>> )( stderr =
>>>
>> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
>>> )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )(
>> project =
>>> "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
>>>
>> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
>>> ) ( "outputData"
>>>
>> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
>>> ) )( proxy_timeout = "1" )( arguments =
>>>
>> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
>>>
>> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
>>>
>> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
>>> )( directory =
>>>
>> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
>>> )( maxmemory = "2048" ) working directory =
>>>
>> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
>>> temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper
>> Endpoint
>>> = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
>>> [INFO] -----END DATA-----
>>>
>> =================================================================================================================
>>>
>>>
>>> Thank you so much,
>>>
>>>
>>> Pedro da Silveira
>>
>>
Re: Submit task to Lonestar using my Xsede account instead of using ogce
Posted by Pedro da Silveira <pe...@gmail.com>.
Hi Raminder,
I tested the task submission again. My workflow has 2 application services
and 4 inputs total. Those 2 tasks run in less than 5 minutes, it is a just
a test.
The first application services ran successfully (File transfer and job),
but the second application services didn't. The second application services
got the files transfer correctly, but did not submit the task to PBS. The
Airavata server was constantly printing "Job Error Code: 72".
Do you know what could possibly cause this message?
This is the Airavata-Server log messages:
[INFO] -----END DATA-----
[INFO] Status is zero
[INFO] Status of job
https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
[INFO] -----DATA-----
[INFO] Status of job
https://gridftp1.ls4.tacc.utexas.edu:50383/16289984330111623786/8943296923859958664/isFAILED
[INFO] -----END DATA-----
[INFO] Job Error Code: 72
[ERROR] Context passed was NULL.
java.lang.RuntimeException: Context passed was NULL.
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
at
org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
at
org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
at
org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
[INFO] -----DATA-----
[INFO] Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
[INFO] -----END DATA-----
[ERROR] Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol
: https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.Exception: Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
... 12 more
Exception in thread "Thread-67"
org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException:
org.apache.airavata.workflow.model.exceptions.WorkflowException: Job
Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
at java.lang.Thread.run(Thread.java:680)
Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException:
Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
at
org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
... 3 more
Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job
Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
at
org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
at
org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
at
org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
at
org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
... 7 more
Caused by: java.lang.Exception: Job Protocol : https
Host name : gridftp1.ls4.tacc.utexas.edu
Port number : 50383
Url path : 16289984330111623786/8943296923859958664/
User : null
Pwd : null
on host lonestar4.tacc.teragrid.org Job Exit Code = 72
... 12 more
Thank you,
On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh <ra...@gmail.com>wrote:
> Hi Pedro,
>
> Can you check space in home directory of your account on Lonestar? I have
> seen such problem if you cross disk quota. Gram does not give any error
> and job does not go into queue. If quota is fine then we need to debug more.
>
> Thanks
> Raminder
>
> On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:
>
> > Hi Dev,
> >
> > I am trying to submit a workflow using my Xsede account using Xbaya. It
> has
> > worked successfully using "ogce" account.
> > I changed the file "airavata-server.properties" to use my Xsede portal
> > account.
> >
> > myproxy.user=pedrorcs
> > myproxy.pass=******
> >
> > I also changed the Application Service to use a different settings like
> my
> > user $SCRATCH directory.
> >
> > Executable path:
> > /scratch/00091/tg458470/executePwscf.sh
> >
> > Scratch Working directory:
> > /scratch/00091/tg458470/Phonon
> >
> > I set the workflow to run then I setup correctly the local path to input
> > files on my desktop.
> > All input files got transferred correctly, but the job were never not
> > submitted to PBS.
> > Can someone please clarify if I am doing something wrong?
> >
> > This is the log on Airavata-Server:
> >
> >
> =================================================================================================================
> > [INFO] Experiment launched
> > :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
> > [INFO] -----DATA-----
> > [INFO] Start scheduling
> > [INFO] -----END DATA-----
> > [INFO] Searching registry for some deployed application hosts
> > [INFO] Found service on: lonestar4.tacc.teragrid.org
> > [INFO] Found service on: lonestar4.tacc.teragrid.org
> > [INFO] -----DATA-----
> > [INFO] Finish scheduling
> > [INFO] -----END DATA-----
> > null
> > [INFO] Proxy file renewed to
> > /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
> > pedrorcs with 3600 lifetime.
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> > =//scratch/00091/tg458470/Phonon
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> > is done
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> > is done
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> > is done
> > [INFO] -----DATA-----
> > [INFO] Start execution
> > [INFO] -----END DATA-----
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] -----DATA-----
> > [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL =
> &(
> > queue = "development" )( stdout =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
> > )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
> > )( stderr =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
> > )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )(
> project =
> > "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
> > ) ( "outputData"
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
> > ) )( proxy_timeout = "1" )( arguments =
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
> > )( directory =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
> > )( maxmemory = "2048" ) working directory =
> >
> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> > temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper
> Endpoint
> > = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> > [INFO] -----END DATA-----
> >
> =================================================================================================================
> >
> >
> > Thank you so much,
> >
> >
> > Pedro da Silveira
>
>
Re: Submit task to Lonestar using my Xsede account instead of using ogce
Posted by Pedro da Silveira <pe...@gmail.com>.
Hi Raminder,
Yes. I exceeded my disk quota at $HOME on Lonestar
login1$ du -sh ~/
1.1G /home1/00091/tg458470/
login1$
I checked the Lonestar User Guide and it says that each user are limited by
quota to 1GB on $HOME.
I will clean my $HOME and try the test again.
Thank you,
On Wed, Feb 6, 2013 at 9:23 AM, Raminder Singh <ra...@gmail.com>wrote:
> Hi Pedro,
>
> Can you check space in home directory of your account on Lonestar? I have
> seen such problem if you cross disk quota. Gram does not give any error
> and job does not go into queue. If quota is fine then we need to debug more.
>
> Thanks
> Raminder
>
> On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:
>
> > Hi Dev,
> >
> > I am trying to submit a workflow using my Xsede account using Xbaya. It
> has
> > worked successfully using "ogce" account.
> > I changed the file "airavata-server.properties" to use my Xsede portal
> > account.
> >
> > myproxy.user=pedrorcs
> > myproxy.pass=******
> >
> > I also changed the Application Service to use a different settings like
> my
> > user $SCRATCH directory.
> >
> > Executable path:
> > /scratch/00091/tg458470/executePwscf.sh
> >
> > Scratch Working directory:
> > /scratch/00091/tg458470/Phonon
> >
> > I set the workflow to run then I setup correctly the local path to input
> > files on my desktop.
> > All input files got transferred correctly, but the job were never not
> > submitted to PBS.
> > Can someone please clarify if I am doing something wrong?
> >
> > This is the log on Airavata-Server:
> >
> >
> =================================================================================================================
> > [INFO] Experiment launched
> > :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
> > [INFO] -----DATA-----
> > [INFO] Start scheduling
> > [INFO] -----END DATA-----
> > [INFO] Searching registry for some deployed application hosts
> > [INFO] Found service on: lonestar4.tacc.teragrid.org
> > [INFO] Found service on: lonestar4.tacc.teragrid.org
> > [INFO] -----DATA-----
> > [INFO] Finish scheduling
> > [INFO] -----END DATA-----
> > null
> > [INFO] Proxy file renewed to
> > /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
> > pedrorcs with 3600 lifetime.
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> > =//scratch/00091/tg458470/Phonon
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
> > [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> >
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> > is done
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> > is done
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] The remote file is
> >
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> > [INFO] Uploading file
> > [INFO] Upload file
> >
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> > is done
> > [INFO] -----DATA-----
> > [INFO] Start execution
> > [INFO] -----END DATA-----
> > org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> > [INFO] -----DATA-----
> > [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL =
> &(
> > queue = "development" )( stdout =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
> > )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
> > )( stderr =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
> > )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )(
> project =
> > "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
> > ) ( "outputData"
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
> > ) )( proxy_timeout = "1" )( arguments =
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
> >
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
> > )( directory =
> >
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
> > )( maxmemory = "2048" ) working directory =
> >
> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> > temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper
> Endpoint
> > = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> > [INFO] -----END DATA-----
> >
> =================================================================================================================
> >
> >
> > Thank you so much,
> >
> >
> > Pedro da Silveira
>
>
Re: Submit task to Lonestar using my Xsede account instead of using ogce
Posted by Raminder Singh <ra...@gmail.com>.
Hi Pedro,
Can you check space in home directory of your account on Lonestar? I have seen such problem if you cross disk quota. Gram does not give any error and job does not go into queue. If quota is fine then we need to debug more.
Thanks
Raminder
On Feb 5, 2013, at 7:49 PM, Pedro da Silveira wrote:
> Hi Dev,
>
> I am trying to submit a workflow using my Xsede account using Xbaya. It has
> worked successfully using "ogce" account.
> I changed the file "airavata-server.properties" to use my Xsede portal
> account.
>
> myproxy.user=pedrorcs
> myproxy.pass=******
>
> I also changed the Application Service to use a different settings like my
> user $SCRATCH directory.
>
> Executable path:
> /scratch/00091/tg458470/executePwscf.sh
>
> Scratch Working directory:
> /scratch/00091/tg458470/Phonon
>
> I set the workflow to run then I setup correctly the local path to input
> files on my desktop.
> All input files got transferred correctly, but the job were never not
> submitted to PBS.
> Can someone please clarify if I am doing something wrong?
>
> This is the log on Airavata-Server:
>
> =================================================================================================================
> [INFO] Experiment launched
> :SimplePhonon_01a4d374-486f-4948-937f-a9de4b2b45eb
> [INFO] -----DATA-----
> [INFO] Start scheduling
> [INFO] -----END DATA-----
> [INFO] Searching registry for some deployed application hosts
> [INFO] Found service on: lonestar4.tacc.teragrid.org
> [INFO] Found service on: lonestar4.tacc.teragrid.org
> [INFO] -----DATA-----
> [INFO] Finish scheduling
> [INFO] -----END DATA-----
> null
> [INFO] Proxy file renewed to
> /tmp/x509up_upedrorcsed4c4290-90e6-40a6-bfe7-3c5239da1b7c for the user
> pedrorcs with 3600 lifetime.
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData
> [INFO] Creating Directory = gridftp1.ls4.tacc.utexas.edu:2811
> =//scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input
> is done
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3
> is done
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] The remote file is
> ///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> [INFO] Uploading file
> [INFO] Upload file
> to:///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb
> is done
> [INFO] -----DATA-----
> [INFO] Start execution
> [INFO] -----END DATA-----
> org.globus.gsi.gssapi.GlobusGSSCredentialImpl@2161df1f
> [INFO] -----DATA-----
> [INFO] Finished launching job, Host = lonestar4.tacc.teragrid.org RSL = &(
> queue = "development" )( stdout =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stdout"
> )( count = "12" )( executable = "/scratch/00091/tg458470/executePwscf.sh"
> )( stderr =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/lonestar_application.stderr"
> )( maxwalltime = "20" )( hostCount = "1" )( minmemory = "1024" )( project =
> "TG-TRA120030" )( jobtype = "mpi" )( environment = ( "inputData"
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData"
> ) ( "outputData"
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/outputData"
> ) )( proxy_timeout = "1" )( arguments =
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Pwscf_Input"
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/Mg.vbc3"
> "///scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d/inputData/008Ocabm3.vdb"
> )( directory =
> "/scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d"
> )( maxmemory = "2048" ) working directory =
> /scratch/00091/tg458470/Phonon/AppSimplePhonon_Tue_Feb_05_18_30_22_CST_2013_7a7dded8-e058-4be2-ad43-cacf77b3138d
> temp directory = /scratch/00091/tg458470/Phonon Globus GateKeeper Endpoint
> = gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> [INFO] -----END DATA-----
> =================================================================================================================
>
>
> Thank you so much,
>
>
> Pedro da Silveira