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Posted to dev@airavata.apache.org by "Eroma (JIRA)" <ji...@apache.org> on 2014/04/01 20:43:22 UTC
[jira] [Updated] (AIRAVATA-755) Incompatible parameters on HPC
Configuration needs validation process
[ https://issues.apache.org/jira/browse/AIRAVATA-755?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eroma updated AIRAVATA-755:
---------------------------
Fix Version/s: 0.13
> Incompatible parameters on HPC Configuration needs validation process
> ---------------------------------------------------------------------
>
> Key: AIRAVATA-755
> URL: https://issues.apache.org/jira/browse/AIRAVATA-755
> Project: Airavata
> Issue Type: Improvement
> Components: GFac, XBaya
> Affects Versions: 0.6
> Reporter: Pedro da Silveira
> Priority: Minor
> Fix For: 0.13
>
>
> I setup a workflow to run on Lonestar with the following HPC configuration
> Max Wall time: 1440
> CPU Count: 64
> Node: 6
> Processor Per Node: 12
> Min Memory: 10240
> Max: 15360
> It had 4 inputs and one single output. Unfortunately, my workflow task never got submitted to Lonestar.
> The Airavata Server had the error message below:
> So, I only changed the parameter from "CPU Count: 64" to "CPU Count: 72" and my workflow task got submitted to Lonestar correctly.
> ===========
> Error Message
> ======================================================================
> [INFO] -----DATA-----
> [INFO] https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/
> [INFO] gridftp1.ls4.tacc.utexas.edu:2119/jobmanager-sge
> [INFO] null
> [INFO] null
> [INFO] /C=US/O=National Center for Supercomputing Applications/CN=OGCE Community User
> [INFO] null
> [INFO] &( queue = "normal" )( stdout = "/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/lonestar_application.stdout" )( count = "64" )( executable = "/scratch/01437/ogce/Vlab/Phonon/executePhonon.sh" )( stderr = "/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/lonestar_application.stderr" )( maxwalltime = "1440" )( hostCount = "6" )( minmemory = "10240" )( project = "TG-STA110014S" )( jobtype = "mpi" )( environment = ( "inputData" "/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData" ) ( "outputData" "/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/outputData" ) )( proxy_timeout = "1" )( arguments = "///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Pwscf_Input" "///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Cd_PON_sp_LDA.vdb" "///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Te_PON_LDA.vdb" "///scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3/inputData/Phonon_Input" )( directory = "/scratch/01437/ogce/Vlab/Phonon/__p3_14/AppPhononSingle_Wed_Jan_30_19_33_57_CST_2013_81e76edb-dec5-4a04-ac8b-dead149cf5b3" )( maxmemory = "15360" )
> [INFO] -----END DATA-----
> [INFO] Status is zero
> [INFO] Status of job https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/is FAILED
> [INFO] -----DATA-----
> [INFO] Status of job https://gridftp1.ls4.tacc.utexas.edu:50393/16289878754566973521/8943296923859968446/is FAILED
> [INFO] -----END DATA-----
> [INFO] Job Error Code: 14
> [ERROR] Context passed was NULL.
> java.lang.RuntimeException: Context passed was NULL.
> at org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:496)
> at org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl.sendingFault(ProvenanceNotifierImpl.java:485)
> at org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification.executionFail(WorkflowTrackingNotification.java:108)
> at org.apache.airavata.core.gfac.notification.impl.DefaultNotifier.executionFail(DefaultNotifier.java:135)
> at org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:225)
> at org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> [INFO] -----DATA-----
> [INFO] Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> [INFO] -----END DATA-----
> [ERROR] Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> at org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> at org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> Caused by: java.lang.Exception: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> ... 12 more
> Exception in thread "Thread-58" org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException: org.apache.airavata.workflow.model.exceptions.WorkflowException: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:392)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.access$400(WorkflowInterpretorSkeleton.java:87)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton$2.run(WorkflowInterpretorSkeleton.java:382)
> at java.lang.Thread.run(Thread.java:680)
> Caused by: org.apache.airavata.workflow.model.exceptions.WorkflowException: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> at org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:321)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.handleWSComponent(WorkflowInterpreter.java:749)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.executeDynamically(WorkflowInterpreter.java:533)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpreter.scheduleDynamically(WorkflowInterpreter.java:218)
> at org.apache.airavata.xbaya.interpretor.WorkflowInterpretorSkeleton.executeWorkflow(WorkflowInterpretorSkeleton.java:389)
> ... 3 more
> Caused by: org.apache.airavata.core.gfac.exception.JobSubmissionFault: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> at org.apache.airavata.core.gfac.provider.impl.GramProvider.executeApplication(GramProvider.java:222)
> at org.apache.airavata.core.gfac.provider.AbstractProvider.execute(AbstractProvider.java:69)
> at org.apache.airavata.core.gfac.services.impl.AbstractSimpleService.execute(AbstractSimpleService.java:118)
> at org.apache.airavata.core.gfac.GfacAPI.gridJobSubmit(GfacAPI.java:140)
> at org.apache.airavata.xbaya.invoker.EmbeddedGFacInvoker.invoke(EmbeddedGFacInvoker.java:256)
> ... 7 more
> Caused by: java.lang.Exception: Job Protocol : https
> Host name : gridftp1.ls4.tacc.utexas.edu
> Port number : 50393
> Url path : 16289878754566973521/8943296923859968446/
> User : null
> Pwd : null
> on host lonestar4.tacc.teragrid.org Job Exit Code = 14
> ... 12 more
> ======================================================================
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