[ctakes] branch main updated (e4767d1 -> 9018bcf)

[se...@apache.org]

This is an automated email from the ASF dual-hosted git repository.

seanfinan pushed a change to branch main
in repository https://gitbox.apache.org/repos/asf/ctakes.git


    from e4767d1  PBJ initial commit
     add f390c16  PBJ fixes, improvements More suppressed warnings (unchecked)
     add 9018bcf  type system moved

No new revisions were added by this update.

Summary of changes:
 .../org/apache/ctakes/core/ae/CtakesRunner.java    | 30 ++++++++++++---
 .../ctakes/core/ae/PausableFileLoggerAE.java       | 33 ++++++++++++++++-
 ctakes-distribution/src/main/assembly/bin.xml      |  9 ++++-
 .../ctakes/drugner/ae/DrugMentionAnnotator.java    |  2 +
 .../drugner/fsm/machines/elements/DurationFSM.java |  1 +
 .../fsm/machines/util/SubSectionIndicatorFSM.java  |  1 +
 .../fsm/machines/util/SuffixStrengthFSM.java       |  3 ++
 .../ctakes/examples/pipeline/PbjFirstStep.piper    | 23 ++++++------
 .../{PbjSecondStep.piper => PbjThirdStep.piper}    | 13 +------
 .../org/apache/ctakes/pbj/ae/ArtemisStopper.java   | 22 +++++++++++
 .../java/org/apache/ctakes/pbj/ae/PbjSender.java   | 43 ++++++++++------------
 .../java/org/apache/ctakes/pbj/cr/PbjReceiver.java |  8 +---
 .../apache/ctakes/pbj/util/ArtemisController.java  | 26 +++++++++----
 .../pbj/util/{PbjUtil.java => PbjConstants.java}   |  5 +--
 .../python/ctakes_pbj/component/pbj_receiver.py    |  5 +--
 .../main/python/ctakes_pbj/examples/word_finder.py |  1 +
 .../ctakes_pbj/examples/word_finder_pipeline.py    |  5 +--
 .../ctakes_pbj/type_system/type_system_loader.py   |  2 +-
 .../apache/ctakes/pbj/pipeline/PbjStarter.piper    | 22 +++++++++--
 .../apache/ctakes/pbj/pipeline/PbjStopper.piper    |  8 +++-
 .../ctakes/relationextractor/eval/SHARPXMI.java    | 13 ++-----
 .../ctakes/temporal/ae/CRFTimeAnnotator.java       |  4 +-
 .../ae/EventEventCRFRelationAnnotator.java         |  1 +
 .../temporal/ae/EventEventRelationAnnotator.java   |  1 +
 .../ctakes/temporal/ae/SimpleMedDatesFinder.java   |  1 +
 .../temporal/ae/TemporalBertRestAnnotator.java     |  1 +
 pom.xml                                            |  6 +++
 27 files changed, 196 insertions(+), 93 deletions(-)
 rename ctakes-examples/src/user/resources/org/apache/ctakes/examples/pipeline/{PbjSecondStep.piper => PbjThirdStep.piper} (55%)
 rename ctakes-pbj/src/main/java/org/apache/ctakes/pbj/util/{PbjUtil.java => PbjConstants.java} (88%)