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Posted to commits@hama.apache.org by ed...@apache.org on 2008/06/24 12:36:25 UTC

svn commit: r671120 [2/4] - in /incubator/hama/trunk: ./ lib/ lib/findbugs/ lib/findbugs/plugin/ lib/jetty-ext/ src/ src/docs/ src/docs/src/ src/docs/src/documentation/ src/docs/src/documentation/classes/ src/docs/src/documentation/content/ src/docs/sr...

Added: incubator/hama/trunk/src/docs/src/documentation/content/xdocs/hama-eclipse-formatter.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/content/xdocs/hama-eclipse-formatter.xml?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/docs/src/documentation/content/xdocs/hama-eclipse-formatter.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/content/xdocs/hama-eclipse-formatter.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,264 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<profiles version="11">
+<profile kind="CodeFormatterProfile" name="hama-eclipse-formatter" version="11">
+<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_before_root_tags" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_annotation" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_type_parameters" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_type_declaration" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_type_arguments" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.brace_position_for_anonymous_type_declaration" value="end_of_line"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_case" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_brace_in_array_initializer" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_annotation_declaration" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_closing_brace_in_array_initializer" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_annotation" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_field" value="0"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_while" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_new_line_before_else_in_if_statement" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_prefix_operator" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.keep_else_statement_on_same_line" value="false"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_ellipsis" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.comment.insert_new_line_for_parameter" value="do not insert"/>
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+<setting id="org.eclipse.jdt.core.formatter.indent_breaks_compare_to_cases" value="true"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_at_in_annotation" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_multiple_fields" value="16"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_expressions_in_array_initializer" value="16"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_conditional_expression" value="80"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_for" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_binary_operator" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_question_in_wildcard" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.brace_position_for_array_initializer" value="end_of_line"/>
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+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_while" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_package" value="1"/>
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+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_postfix_operator" value="do not insert"/>
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+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_binary_operator" value="insert"/>
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+<setting id="org.eclipse.jdt.core.formatter.comment.format_line_comments" value="true"/>
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+<setting id="org.eclipse.jdt.core.formatter.blank_lines_before_first_class_body_declaration" value="0"/>
+<setting id="org.eclipse.jdt.core.formatter.indentation.size" value="8"/>
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+<setting id="org.eclipse.jdt.core.formatter.alignment_for_superclass_in_type_declaration" value="16"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_assignment" value="0"/>
+<setting id="org.eclipse.jdt.core.compiler.problem.assertIdentifier" value="error"/>
+<setting id="org.eclipse.jdt.core.formatter.tabulation.char" value="space"/>
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+<setting id="org.eclipse.jdt.core.formatter.indent_statements_compare_to_body" value="true"/>
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+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_bracket_in_array_allocation_expression" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_anonymous_type_declaration" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_colon_in_conditional" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_for" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_postfix_operator" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.comment.format_source_code" value="true"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_synchronized" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_allocation_expression" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_constructor_declaration_throws" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_parameters_in_method_declaration" value="16"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_brace_in_array_initializer" value="insert"/>
+<setting id="org.eclipse.jdt.core.compiler.codegen.targetPlatform" value="1.5"/>
+<setting id="org.eclipse.jdt.core.formatter.use_tabs_only_for_leading_indentations" value="false"/>
+<setting id="org.eclipse.jdt.core.formatter.comment.format_header" value="false"/>
+<setting id="org.eclipse.jdt.core.formatter.comment.format_block_comments" value="true"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_enum_constant" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.alignment_for_enum_constants" value="0"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_new_line_in_empty_block" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_annotation_declaration_header" value="true"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_parenthesized_expression" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_parenthesized_expression" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_catch" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_multiple_local_declarations" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_switch" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_for_increments" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_invocation" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_colon_in_assert" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.brace_position_for_type_declaration" value="end_of_line"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_brace_in_array_initializer" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_braces_in_array_initializer" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_opening_paren_in_method_declaration" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_semicolon_in_for" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_paren_in_catch" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_parameterized_type_reference" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_field_declarations" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_closing_paren_in_annotation" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_parameterized_type_reference" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_method_invocation_arguments" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.blank_lines_after_imports" value="1"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_comma_in_multiple_local_declarations" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.indent_body_declarations_compare_to_enum_constant_header" value="true"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_after_semicolon_in_for" value="insert"/>
+<setting id="org.eclipse.jdt.core.formatter.never_indent_line_comments_on_first_column" value="false"/>
+<setting id="org.eclipse.jdt.core.formatter.insert_space_before_opening_angle_bracket_in_type_arguments" value="do not insert"/>
+<setting id="org.eclipse.jdt.core.formatter.never_indent_block_comments_on_first_column" value="false"/>
+<setting id="org.eclipse.jdt.core.formatter.keep_then_statement_on_same_line" value="false"/>
+</profile>
+</profiles>

Added: incubator/hama/trunk/src/docs/src/documentation/content/xdocs/index.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/content/xdocs/index.xml?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/docs/src/documentation/content/xdocs/index.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/content/xdocs/index.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,61 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+
+<!DOCTYPE document PUBLIC "-//APACHE//DTD Documentation V2.0//EN" 
+"http://forrest.apache.org/dtd/document-v20.dtd">
+
+<document>
+  
+  <header>
+    <title>Welcome to Hama project</title>
+  </header>
+  
+  <body>
+    <section>
+    <title>Recent News</title>
+    <ul>
+      <li>20 May 2008 - Hama accepted to Apache Incubator Project.
+      <br />&nbsp;&nbsp;
+      The Incubator PMC have voted to accept Hama to be a apache incubator project. 
+      </li>
+      <li>23 June 2008 - An <a href="http://wiki.apache.org/hama/ScaLAPACK">meeting</a>
+       with Professor Choi J. which a member of 
+       <a href="http://www.netlib.org/scalapack/">ScaLAPACK</a> team.</li>
+    </ul>
+    </section>
+    <section>
+      <title> Introduction </title>
+    <p>
+    <strong>Hama</strong> is a parallel matrix computational package, 
+    which provides an library of matrix operations for the large-scale 
+    processing development environment and Map/Reduce framework for 
+    the large-scale Numerical Analysis and Data Mining, which need the 
+    intensive computation power of matrix inversion, e.g. linear regression, 
+    PCA, SVM and etc.
+    It will be also useful for many scientific applications, e.g. physics 
+    computations, linear algebra, computational fluid dynamics, statistics, 
+    graphic rendering and many more. 
+    </p>
+    </section>
+    <section>
+      <title>Parallelism in Map/Reduce</title>
+      <p>
+        <img src="./images/MapReduce.png" alt="Map/Reduce Diagram" />
+      </p>
+    </section>
+  </body>
+</document>

Added: incubator/hama/trunk/src/docs/src/documentation/content/xdocs/mailing_lists.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/content/xdocs/mailing_lists.xml?rev=671120&view=auto
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--- incubator/hama/trunk/src/docs/src/documentation/content/xdocs/mailing_lists.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/content/xdocs/mailing_lists.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,69 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+
+<!DOCTYPE document PUBLIC "-//APACHE//DTD Documentation V2.0//EN" 
+"http://forrest.apache.org/dtd/document-v20.dtd">
+
+<document>
+  
+  <header>
+    <title>Mailing Lists</title>
+  </header>
+  
+  <body>
+    <section>
+    <title>Hama User List</title>
+    <p>
+    If you use Hama, please subscribe to the Hama user mailing list.<br /> 
+    The Hama user mailing list is : 
+    <a href="mailto:hama-user@incubator.apache.org">hama-user@incubator.apache.org</a>.
+    </p>
+    <ul>
+    <li><a href="mailto:hama-user-subscribe@incubator.apache.org">Subscribe to List</a></li>
+    <li><a href="mailto:hama-user-unsubscribe@incubator.apache.org">Unsubscribe from List</a></li>
+    </ul>
+    </section>
+    
+    <section>
+    <title>Hama Developer List</title>
+    <p>
+    If you'd like to contribute to Hama, please subscribe to the Hama developer mailing list.<br /> 
+    The Hama developer mailing list is : 
+    <a href="mailto:hama-dev@incubator.apache.org">hama-dev@incubator.apache.org</a>.
+    </p>
+    <ul>
+    <li><a href="mailto:hama-dev-subscribe@incubator.apache.org">Subscribe to List</a></li>
+    <li><a href="mailto:hama-dev-unsubscribe@incubator.apache.org">Unsubscribe from List</a></li>
+    </ul>
+    </section>
+
+    <section>
+    <title>Hama Commit List</title>
+    <p>
+    If you'd like to see changes made in Hama's version control system  then subscribe 
+    to the Hama commit mailing list.<br />
+    The Hama commit mailing list is : 
+    <a href="mailto:hama-commits@incubator.apache.org">hama-commits@incubator.apache.org</a>.
+    </p>
+    <ul>
+    <li><a href="mailto:hama-commits-subscribe@incubator.apache.org">Subscribe to List</a></li>
+    <li><a href="mailto:hama-commits-unsubscribe@incubator.apache.org">Unsubscribe from List</a></li>
+    </ul>
+    </section>
+  </body>
+  
+</document>

Added: incubator/hama/trunk/src/docs/src/documentation/content/xdocs/site.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/content/xdocs/site.xml?rev=671120&view=auto
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--- incubator/hama/trunk/src/docs/src/documentation/content/xdocs/site.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/content/xdocs/site.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,75 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+
+<!--
+Forrest site.xml
+
+This file contains an outline of the site's information content.  It is used to:
+- Generate the website menus (though these can be overridden - see docs)
+- Provide semantic, location-independent aliases for internal 'site:' URIs, eg
+<link href="site:changes"> links to changes.html (or ../changes.html if in
+  subdir).
+- Provide aliases for external URLs in the external-refs section.  Eg, <link
+  href="ext:cocoon"> links to http://xml.apache.org/cocoon/
+
+See http://forrest.apache.org/docs/linking.html for more info.
+-->
+
+<site label="Hama" href="" xmlns="http://apache.org/forrest/linkmap/1.0">
+
+  <docs label="Home"> 
+    <overview  label="Overview"           href="index.html" />
+    <!-- 
+    not yet ready things.
+    
+    <started   label="Getting Started"    href="getting_started.html" />
+    <api       label="API Docs"           href="ext:api/index" />
+    <faq       label="FAQ"                href="ext:faq" />
+    -->
+    <lists     label="Mailing Lists"      href="mailing_lists.html" />
+  </docs>
+
+  <docs label="Developers Centre">
+    <environments label="Environments" href="environments.html" />
+  </docs>
+
+  <external-refs>
+    <site      href="http://incubator.apache.org/hama/"/>
+    <lists     href="http://incubator.apache.org/hama/mailing_lists.html"/>
+    <releases  href="http://incubator.apache.org/hama/releases.html">
+      <download href="#Download" />
+    </releases>
+    <wiki      href="http://wiki.apache.org/hama" />
+    <faq       href="http://wiki.apache.org/hama/FAQ" />
+    <zlib      href="http://www.zlib.net/" />
+    <lzo       href="http://www.oberhumer.com/opensource/lzo/" />
+    <gzip      href="http://www.gzip.org/" />
+    <cygwin    href="http://www.cygwin.com/" />
+    <osx       href="http://www.apple.com/macosx" />
+    <api href="api/">
+      <started href="overview-summary.html#overview_description" />
+      <index href="index.html" />
+      <org href="org/">
+        <apache href="apache/">
+          <hama href="hama/">
+          </hama>
+        </apache>
+      </org>
+    </api>
+  </external-refs>
+ 
+</site>

Added: incubator/hama/trunk/src/docs/src/documentation/content/xdocs/tabs.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/content/xdocs/tabs.xml?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/docs/src/documentation/content/xdocs/tabs.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/content/xdocs/tabs.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+
+<!DOCTYPE tabs PUBLIC "-//APACHE//DTD Cocoon Documentation Tab V1.0//EN" 
+          "http://forrest.apache.org/dtd/tab-cocoon-v10.dtd">
+
+<tabs software="Hama"
+      title="Hama"
+      copyright="The Apache Software Foundation"
+      xmlns:xlink="http://www.w3.org/1999/xlink">
+
+  <!-- The rules are:
+    @dir will always have /index.html added.
+    @href is not modified unless it is root-relative and obviously specifies a
+    directory (ends in '/'), in which case /index.html will be added
+  -->
+
+  <tab label="Home" dir="" />  
+  <tab label="Wiki" href="http://wiki.apache.org/hama" />
+  <tab label="Incubation Status" href="http://incubator.apache.org/projects/hama.html" />
+  
+</tabs>

Added: incubator/hama/trunk/src/docs/src/documentation/resources/images/MapReduce.png
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/resources/images/MapReduce.png?rev=671120&view=auto
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URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/resources/images/apache-incubator-hama-white.png?rev=671120&view=auto
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URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/resources/images/favicon.ico?rev=671120&view=auto
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    (empty)

Added: incubator/hama/trunk/src/docs/src/documentation/skinconf.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/src/documentation/skinconf.xml?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/docs/src/documentation/skinconf.xml (added)
+++ incubator/hama/trunk/src/docs/src/documentation/skinconf.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,349 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+
+<!--
+Skin configuration file. This file contains details of your project,
+which will be used to configure the chosen Forrest skin.
+-->
+
+<!DOCTYPE skinconfig PUBLIC "-//APACHE//DTD Skin Configuration V0.6-3//EN" "http://forrest.apache.org/dtd/skinconfig-v06-3.dtd">
+<skinconfig>
+  <!-- To enable lucene search add provider="lucene" (default is google).
+    Add box-location="alt" to move the search box to an alternate location
+    (if the skin supports it) and box-location="all" to show it in all
+    available locations on the page.  Remove the <search> element to show
+    no search box. @domain will enable sitesearch for the specific domain with google.
+    In other words google will search the @domain for the query string.
+  -->
+
+  <search name="Hama" domain="incubator.apache.org" provider="google"/>
+
+  <!-- Disable the print link? If enabled, invalid HTML 4.0.1 -->
+  <disable-print-link>true</disable-print-link>  
+  <!-- Disable the PDF link? -->
+  <disable-pdf-link>false</disable-pdf-link>
+  <!-- Disable the POD link? -->
+  <disable-pod-link>true</disable-pod-link>
+  <!-- Disable the Text link? FIXME: NOT YET IMPLEMENETED. -->
+  <disable-txt-link>true</disable-txt-link>
+  <!-- Disable the xml source link? -->
+  <!-- The xml source link makes it possible to access the xml rendition
+    of the source frim the html page, and to have it generated statically.
+    This can be used to enable other sites and services to reuse the
+    xml format for their uses. Keep this disabled if you don't want other
+    sites to easily reuse your pages.-->
+  <disable-xml-link>true</disable-xml-link>
+
+  <!-- Disable navigation icons on all external links? -->
+  <disable-external-link-image>true</disable-external-link-image>
+
+  <!-- Disable w3c compliance links? 
+    Use e.g. align="center" to move the compliance links logos to 
+    an alternate location default is left.
+    (if the skin supports it) -->
+  <disable-compliance-links>true</disable-compliance-links>
+
+  <!-- Render mailto: links unrecognisable by spam harvesters? -->
+  <obfuscate-mail-links>false</obfuscate-mail-links>
+
+  <!-- Disable the javascript facility to change the font size -->
+  <disable-font-script>true</disable-font-script>
+
+  <!-- project logo -->
+  <project-name></project-name>
+  <project-description></project-description>
+  <project-url></project-url>
+  <project-logo></project-logo>
+
+  <!-- group logo -->
+  <group-name>Hama</group-name>
+  <group-description></group-description>
+  <group-url>index.html</group-url>
+  <group-logo>images/apache-incubator-hama-white.png</group-logo>
+  
+  <!-- optional host logo (e.g. sourceforge logo)
+       default skin: renders it at the bottom-left corner -->
+  <host-url></host-url>
+  <host-logo></host-logo>
+
+  <!-- relative url of a favicon file, normally favicon.ico -->
+  <favicon-url>images/favicon.ico</favicon-url>
+
+  <!-- The following are used to construct a copyright statement -->
+  <year>2008</year>
+  <vendor>The Apache Software Foundation.</vendor>
+  <copyright-link>http://www.apache.org/licenses/</copyright-link>
+
+  <!-- Some skins use this to form a 'breadcrumb trail' of links.
+    Use location="alt" to move the trail to an alternate location
+    (if the skin supports it).
+	  Omit the location attribute to display the trail in the default location.
+	  Use location="none" to not display the trail (if the skin supports it).
+    For some skins just set the attributes to blank.
+  <trail>
+    <link>
+  </trail>
+  -->
+
+  <trail>
+    <link1 name="Apache" href="http://www.apache.org/" />
+    <link2 name="Incubator" href="http://incubator.apache.org/" />
+    <link3 name="Hama" href="http://incubator.apache.org/hama/" />
+  </trail>
+
+  <!-- Configure the TOC, i.e. the Table of Contents.
+  @max-depth
+   how many "section" levels need to be included in the
+   generated Table of Contents (TOC). 
+  @min-sections
+   Minimum required to create a TOC.
+  @location ("page","menu","page,menu", "none")
+   Where to show the TOC.
+  -->
+  <toc max-depth="2" min-sections="1" location="page"/>
+
+  <!-- Heading types can be clean|underlined|boxed  -->
+  <headings type="clean"/>
+  
+  <!-- The optional feedback element will be used to construct a
+    feedback link in the footer with the page pathname appended:
+    <a href="@href">{@to}</a>
+  <feedback to="webmaster@foo.com"
+    href="mailto:webmaster@foo.com?subject=Feedback&#160;" >
+    Send feedback about the website to:
+  </feedback>
+    -->
+  <!--
+    extra-css - here you can define custom css-elements that are 
+    a. overriding the fallback elements or 
+    b. adding the css definition from new elements that you may have 
+       used in your documentation.
+    -->
+  <extra-css>
+    <!--Example of b. 
+        To define the css definition of a new element that you may have used
+        in the class attribute of a <p> node. 
+        e.g. <p class="quote"/>
+        
+            p.quote {
+      margin-left: 2em;
+      padding: .5em;
+      background-color: #f0f0f0;
+      font-family: monospace;
+    }
+    -->
+     #footer a { color: black; }
+  </extra-css>
+
+  <colors>
+  <!-- These values are used for the generated CSS files. -->
+
+  <!-- Krysalis -->
+<!--
+    <color name="header"    value="#FFFFFF"/>
+
+    <color name="tab-selected" value="#a5b6c6" link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="tab-unselected" value="#F7F7F7"  link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="subtab-selected" value="#a5b6c6"  link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="subtab-unselected" value="#a5b6c6"  link="#000000" vlink="#000000" hlink="#000000"/>
+
+    <color name="heading" value="#a5b6c6"/>
+    <color name="subheading" value="#CFDCED"/>
+        
+    <color name="navstrip" value="#CFDCED" font="#000000" link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="toolbox" value="#a5b6c6"/>
+    <color name="border" value="#a5b6c6"/>
+        
+    <color name="menu" value="#F7F7F7" link="#000000" vlink="#000000" hlink="#000000"/>    
+    <color name="dialog" value="#F7F7F7"/>
+            
+    <color name="body"    value="#ffffff" link="#0F3660" vlink="#009999" hlink="#000066"/>
+    
+    <color name="table" value="#a5b6c6"/>    
+    <color name="table-cell" value="#ffffff"/>    
+    <color name="highlight" value="#ffff00"/>
+    <color name="fixme" value="#cc6600"/>
+    <color name="note" value="#006699"/>
+    <color name="warning" value="#990000"/>
+    <color name="code" value="#a5b6c6"/>
+        
+    <color name="footer" value="#a5b6c6"/>
+-->
+  
+  <!-- Forrest -->
+<!--   
+    <color name="header" value="#294563"/>
+
+    <color name="tab-selected" value="#4a6d8c" link="#0F3660" vlink="#0F3660" hlink="#000066"/>
+    <color name="tab-unselected" value="#b5c7e7" link="#0F3660" vlink="#0F3660" hlink="#000066"/>
+    <color name="subtab-selected" value="#4a6d8c" link="#0F3660" vlink="#0F3660" hlink="#000066"/>
+    <color name="subtab-unselected" value="#4a6d8c" link="#0F3660" vlink="#0F3660" hlink="#000066"/>
+    <color name="heading" value="#294563"/>
+    <color name="subheading" value="#4a6d8c"/>
+    <color name="heading" value="#294563"/>
+    <color name="subheading" value="#4a6d8c"/>
+        
+    <color name="navstrip" value="#cedfef" font="#0F3660" link="#0F3660" vlink="#0F3660" hlink="#000066"/>
+    
+    <color name="dialog" value="#4a6d8c"/>
+    <color name="menu" value="#4a6d8c" font="#cedfef" link="#ffffff" vlink="#ffffff" hlink="#ffcf00"/>   
+    
+    <color name="body" value="#ffffff"  link="#0F3660" vlink="#009999" hlink="#000066"/>
+    <color name="table" value="#7099C5"/>    
+    <color name="table-cell" value="#f0f0ff"/>    
+    <color name="highlight" value="#ffff00"/>
+    <color name="fixme" value="#cc6600"/>
+    <color name="note" value="#006699"/>
+    <color name="warning" value="#990000"/>
+    <color name="code" value="#CFDCED"/>
+        
+    <color name="footer" value="#cedfef"/>
+    <color name="toolbox" value="#4a6d8c"/>
+    <color name="border" value="#294563"/>
+-->
+  <!-- Collabnet --> 
+  <!--
+    <color name="header"    value="#003366"/>
+    <color name="tab-selected" value="#dddddd" link="#555555" vlink="#555555" hlink="#555555"/>
+    <color name="tab-unselected" value="#999999" link="#ffffff" vlink="#ffffff" hlink="#ffffff"/>
+    <color name="subtab-selected" value="#cccccc" link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="subtab-unselected" value="#cccccc" link="#555555" vlink="#555555" hlink="#555555"/>
+
+    <color name="heading" value="#003366"/>
+    <color name="subheading" value="#888888"/>
+    
+    <color name="navstrip" value="#dddddd" font="#555555"/>
+    <color name="toolbox" value="#dddddd" font="#555555"/>
+    <color name="border" value="#999999"/>
+    
+    <color name="menu" value="#ffffff"/>    
+    <color name="dialog" value="#eeeeee"/>
+            
+    <color name="body"      value="#ffffff"/>
+    
+    <color name="table" value="#ccc"/>    
+    <color name="table-cell" value="#ffffff"/>   
+    <color name="highlight" value="#ffff00"/>
+    <color name="fixme" value="#cc6600"/>
+    <color name="note" value="#006699"/>
+    <color name="warning" value="#990000"/>
+    <color name="code" value="#003366"/>
+        
+    <color name="footer" value="#ffffff"/>
+-->
+ <!-- Lenya using pelt-->
+<!--
+    <color name="header" value="#ffffff"/>
+
+    <color name="tab-selected" value="#4C6C8F" link="#ffffff" vlink="#ffffff" hlink="#ffffff"/>
+    <color name="tab-unselected" value="#E5E4D9" link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="subtab-selected" value="#000000" link="#000000" vlink="#000000" hlink="#000000"/>
+    <color name="subtab-unselected" value="#E5E4D9" link="#000000" vlink="#000000" hlink="#000000"/>
+
+    <color name="heading" value="#E5E4D9"/>
+    <color name="subheading" value="#000000"/>
+    <color name="published" value="#4C6C8F" font="#FFFFFF"/>
+    <color name="feedback" value="#4C6C8F" font="#FFFFFF" align="center"/>
+    <color name="navstrip" value="#E5E4D9" font="#000000"/>
+
+    <color name="toolbox" value="#CFDCED" font="#000000"/>
+
+    <color name="border" value="#999999"/>
+    <color name="menu" value="#4C6C8F" font="#ffffff" link="#ffffff" vlink="#ffffff" hlink="#ffffff" current="#FFCC33" />    
+    <color name="menuheading" value="#cfdced" font="#000000" />
+    <color name="searchbox" value="#E5E4D9" font="#000000"/>
+    
+    <color name="dialog" value="#CFDCED"/>
+    <color name="body" value="#ffffff" />            
+    
+    <color name="table" value="#ccc"/>    
+    <color name="table-cell" value="#ffffff"/>   
+    <color name="highlight" value="#ffff00"/>
+    <color name="fixme" value="#cc6600"/>
+    <color name="note" value="#006699"/>
+    <color name="warning" value="#990000"/>
+    <color name="code" value="#003366"/>
+        
+    <color name="footer" value="#E5E4D9"/>
+-->
+  </colors>
+ 
+  <!-- Settings specific to PDF output. -->
+  <pdf>
+    <!-- 
+       Supported page sizes are a0, a1, a2, a3, a4, a5, executive,
+       folio, legal, ledger, letter, quarto, tabloid (default letter).
+       Supported page orientations are portrait, landscape (default
+       portrait).
+       Supported text alignments are left, right, justify (default left).
+    -->
+    <page size="letter" orientation="portrait" text-align="left"/>
+
+    <!--
+       Margins can be specified for top, bottom, inner, and outer
+       edges. If double-sided="false", the inner edge is always left
+       and the outer is always right. If double-sided="true", the
+       inner edge will be left on odd pages, right on even pages,
+       the outer edge vice versa.
+       Specified below are the default settings.
+    -->
+    <margins double-sided="false">
+      <top>1in</top>
+      <bottom>1in</bottom>
+      <inner>1.25in</inner>
+      <outer>1in</outer>
+    </margins>
+
+    <!--
+      Print the URL text next to all links going outside the file
+    -->
+    <show-external-urls>false</show-external-urls>
+
+    <!--
+      Disable the copyright footer on each page of the PDF.
+      A footer is composed for each page. By default, a "credit" with role=pdf
+      will be used, as explained below. Otherwise a copyright statement
+      will be generated. This latter can be disabled.
+    -->
+    <disable-copyright-footer>false</disable-copyright-footer>
+  </pdf>
+
+  <!-- Credits are typically rendered as a set of small clickable
+    images in the page footer.
+    Use box-location="alt" to move the credit to an alternate location
+    (if the skin supports it). 
+  -->
+  <credits>
+    <credit box-location="alt">
+      <name>Built with Apache Forrest</name>
+      <url>http://forrest.apache.org/</url>
+      <image>images/built-with-forrest-button.png</image>
+      <width>88</width>
+      <height>31</height>
+    </credit>
+    <!-- A credit with @role="pdf" will be used to compose a footer
+     for each page in the PDF, using either "name" or "url" or both.
+    -->
+    <!--
+    <credit role="pdf">
+      <name>Built with Apache Forrest</name>
+      <url>http://forrest.apache.org/</url>
+    </credit>
+    -->
+  </credits>
+
+</skinconfig>

Added: incubator/hama/trunk/src/docs/status.xml
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/docs/status.xml?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/docs/status.xml (added)
+++ incubator/hama/trunk/src/docs/status.xml Tue Jun 24 03:36:21 2008
@@ -0,0 +1,74 @@
+<?xml version="1.0"?>
+<!--
+  Copyright 2002-2004 The Apache Software Foundation
+
+  Licensed under the Apache License, Version 2.0 (the "License");
+  you may not use this file except in compliance with the License.
+  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+<status>
+
+  <developers>
+    <person name="Joe Bloggs" email="joe@joescompany.org" id="JB" />
+    <!-- Add more people here -->
+  </developers>
+
+  <changes>
+    <!-- Add new releases here -->
+    <release version="0.1" date="unreleased">
+      <!-- Some action types have associated images. By default, images are
+      defined for 'add', 'fix', 'remove', 'update' and 'hack'. If you add
+      src/documentation/resources/images/<foo>.jpg images, these will
+      automatically be used for entries of type <foo>. -->
+
+      <action dev="JB" type="add" context="admin">
+        Initial Import
+      </action>
+      <!-- Sample action:
+      <action dev="JB" type="fix" due-to="Joe Contributor"
+          due-to-email="joec@apache.org" fixes-bug="123">
+          Fixed a bug in the Foo class.
+        </action>
+        -->
+    </release>
+  </changes>
+
+  <todo>
+    <actions priority="high">
+      <action context="docs" dev="JB">
+        Customize this template project with your project's details.  This
+        TODO list is generated from 'status.xml'.
+      </action>
+      <action context="docs" dev="JB">
+        Add lots of content.  XML content goes in
+        <code>src/documentation/content/xdocs</code>, or wherever the
+        <code>${project.xdocs-dir}</code> property (set in
+        <code>forrest.properties</code>) points.
+      </action>
+      <action context="feedback" dev="JB">
+        Mail <link
+          href="mailto:forrest-dev@xml.apache.org">forrest-dev@xml.apache.org</link>
+        with feedback.
+      </action>
+    </actions>
+    <!-- Add todo items. @context is an arbitrary string. Eg:
+    <actions priority="high">
+      <action context="code" dev="SN">
+      </action>
+    </actions>
+    <actions priority="medium">
+      <action context="docs" dev="open">
+      </action>
+    </actions>
+    -->
+  </todo>
+
+</status>

Added: incubator/hama/trunk/src/examples/org/apache/hama/examples/ExampleDriver.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/examples/org/apache/hama/examples/ExampleDriver.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/examples/org/apache/hama/examples/ExampleDriver.java (added)
+++ incubator/hama/trunk/src/examples/org/apache/hama/examples/ExampleDriver.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,35 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama.examples;
+
+import org.apache.hadoop.util.ProgramDriver;
+
+public class ExampleDriver {
+  public static void main(String[] args) {
+    ProgramDriver pgd = new ProgramDriver();
+    try {
+      pgd.addClass("multiplication", MatrixMultiplication.class,
+          "A map/reduce multiplication.");
+      pgd.driver(args);
+    } catch (Throwable e) {
+      e.printStackTrace();
+    }
+  }
+}

Added: incubator/hama/trunk/src/examples/org/apache/hama/examples/MatrixMultiplication.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/examples/org/apache/hama/examples/MatrixMultiplication.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/examples/org/apache/hama/examples/MatrixMultiplication.java (added)
+++ incubator/hama/trunk/src/examples/org/apache/hama/examples/MatrixMultiplication.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,64 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama.examples;
+
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.hbase.HBaseConfiguration;
+import org.apache.hama.Matrix;
+
+public class MatrixMultiplication {
+
+  public static void main(String[] args) {
+    if (args.length < 3) {
+      System.out.println("multiplication <map_num> <row_m> <column_n>");
+      System.exit(-1);
+    }
+
+    int map = Integer.parseInt(args[0]);
+    int row = Integer.parseInt(args[1]);
+    int column = Integer.parseInt(args[2]);
+
+    Configuration conf = new HBaseConfiguration();
+    
+    conf.setInt("mapred.map.tasks", map);
+    conf.setInt("mapred.reduce.tasks", 1);
+
+    Matrix a = Matrix.random(conf, row, column);
+    System.out.println("Create the " + row + " * " + column
+        + " random matrix A.");
+    Matrix b = Matrix.random(conf, row, column);
+    System.out.println("Create the " + row + " * " + column
+        + " random matrix B.");
+
+    long start = System.currentTimeMillis();
+    Matrix c = a.multiply(b);
+    long end = System.currentTimeMillis();
+
+    System.out.println(executeTime(start, end));
+    a.clear();
+    b.clear();
+    c.clear();
+  }
+
+  public static String executeTime(long start, long end) {
+    return "(" + String.format("%.2f", Double.valueOf((end - start) * 0.001))
+        + " sec)";
+  }
+}

Added: incubator/hama/trunk/src/java/org/apache/hama/AbstractMatrix.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/java/org/apache/hama/AbstractMatrix.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/java/org/apache/hama/AbstractMatrix.java (added)
+++ incubator/hama/trunk/src/java/org/apache/hama/AbstractMatrix.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,237 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama;
+
+import java.io.IOException;
+import java.util.Map;
+import java.util.SortedMap;
+import java.util.TreeMap;
+
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.hbase.HBaseConfiguration;
+import org.apache.hadoop.hbase.HColumnDescriptor;
+import org.apache.hadoop.hbase.HTableDescriptor;
+import org.apache.hadoop.hbase.MasterNotRunningException;
+import org.apache.hadoop.hbase.client.HBaseAdmin;
+import org.apache.hadoop.hbase.client.HTable;
+import org.apache.hadoop.hbase.io.BatchUpdate;
+import org.apache.hadoop.hbase.io.Cell;
+import org.apache.hadoop.io.Text;
+import org.apache.hama.mapred.MatrixMapReduce;
+import org.apache.log4j.Logger;
+
+/**
+ * Methods of the matrix classes
+ */
+public abstract class AbstractMatrix extends MatrixMapReduce implements
+    MatrixInterface {
+  static final Logger LOG = Logger.getLogger(AbstractMatrix.class);
+
+  /** Hbase Configuration */
+  protected HBaseConfiguration config;
+  /** Hbase admin object */
+  protected HBaseAdmin admin;
+  /** The name of Matrix */
+  protected Text matrixName;
+  /** Hbase table object */
+  protected HTable table;
+  /** Matrix attribute description */
+  protected HTableDescriptor tableDesc;
+  /** The parallel degree of map function */
+  protected int mapper;
+  /** The parallel degree of reduce function */
+  protected int reducer;
+
+  /**
+   * Sets the job configuration
+   * 
+   * @param conf configuration object
+   */
+  public void setConfiguration(Configuration conf) {
+    config = (HBaseConfiguration) conf;
+    try {
+      admin = new HBaseAdmin(config);
+    } catch (MasterNotRunningException e) {
+      LOG.info(e);
+    }
+    mapper = conf.getInt("mapred.map.tasks", 1);
+    reducer = conf.getInt("mapred.reduce.tasks", 1);
+  }
+
+  /**
+   * Create matrix space
+   */
+  protected void create() {
+    try {
+      tableDesc.addFamily(new HColumnDescriptor(Constants.METADATA.toString()));
+      LOG.info("Initializaing.");
+      admin.createTable(tableDesc);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /** {@inheritDoc} */
+  public int getRowDimension() {
+    Cell rows = null;
+    try {
+      rows = table.get(Constants.METADATA, Constants.METADATA_ROWS);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+
+    return bytesToInt(rows.getValue());
+  }
+
+  /** {@inheritDoc} */
+  public int getColumnDimension() {
+    Cell columns = null;
+    try {
+      columns = table.get(Constants.METADATA, Constants.METADATA_COLUMNS);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+    return bytesToInt(columns.getValue());
+  }
+
+  /** {@inheritDoc} */
+  public double get(int i, int j) {
+    Text row = new Text(String.valueOf(i));
+    Text column = new Text(Constants.COLUMN + String.valueOf(j));
+    Cell c;
+    double result = -1;
+    try {
+      c = table.get(row, column);
+      if (c != null) {
+        result = toDouble(c.getValue());
+      }
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+    return result;
+  }
+
+  /** {@inheritDoc} */
+  public FeatureVector getRowVector(int row) {
+    try {
+      SortedMap<Integer, Double> result = new TreeMap<Integer, Double>();
+      for (Map.Entry<Text, Cell> f : table
+          .getRow(new Text(String.valueOf(row))).entrySet()) {
+        result.put(getIndex(f.getKey()), toDouble(f.getValue().getValue()));
+      }
+      return new FeatureVector(result);
+    } catch (IOException e) {
+      e.printStackTrace();
+      return null;
+    }
+  }
+
+  /** {@inheritDoc} */
+  public void set(int i, int j, double d) {
+    BatchUpdate b = new BatchUpdate(new Text(String.valueOf(i)));
+    b.put(new Text(Constants.COLUMN + String.valueOf(j)), toBytes(d));
+    try {
+      table.commit(b);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /** {@inheritDoc} */
+  public void add(int i, int j, double d) {
+    // TODO Auto-generated method stub
+  }
+
+  /** {@inheritDoc} */
+  public void deleteColumnEquals(int j) {
+    // TODO Auto-generated method stub
+  }
+
+  /** {@inheritDoc} */
+  public void deleteRowEquals(int i) {
+    // TODO Auto-generated method stub
+  }
+
+  /** {@inheritDoc} */
+  public void reset(int m, int n) {
+    // TODO Auto-generated method stub
+  }
+
+  /** {@inheritDoc} */
+  public void setDimension(int rows, int columns) {
+    BatchUpdate b = new BatchUpdate(Constants.METADATA);
+    b.put(Constants.METADATA_ROWS, intToBytes(rows));
+    b.put(Constants.METADATA_COLUMNS, intToBytes(columns));
+
+    try {
+      table.commit(b);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /** {@inheritDoc} */
+  public String getName() {
+    return (matrixName != null) ? matrixName.toString() : null;
+  }
+
+  /**
+   * Return the value of determinant
+   * 
+   * @return the value of determinant
+   */
+  public double getDeterminant() {
+    try {
+      return toDouble(table.get(
+          new Text(String.valueOf(Constants.DETERMINANT)),
+          new Text(Constants.COLUMN)).getValue());
+    } catch (IOException e) {
+      LOG.error(e, e);
+      return -1;
+    }
+  }
+
+  /** {@inheritDoc} */
+  public Matrix copy() {
+    // TODO
+    return null;
+  }
+
+  /** {@inheritDoc} */
+  public void save(String matrixName) {
+    // TODO
+  }
+
+  /** {@inheritDoc} */
+  public void close() {
+    admin = null;
+    matrixName = null;
+    tableDesc = null;
+  }
+
+  /** {@inheritDoc} */
+  public void clear() {
+    try {
+      admin.deleteTable(matrixName);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+}

Added: incubator/hama/trunk/src/java/org/apache/hama/Constants.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/java/org/apache/hama/Constants.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/java/org/apache/hama/Constants.java (added)
+++ incubator/hama/trunk/src/java/org/apache/hama/Constants.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,62 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama;
+
+import org.apache.hadoop.io.Text;
+
+/**
+ * Some constants used in the hama
+ */
+public class Constants {
+  /** Meta-columnfamily to store the matrix-info */
+  public final static Text METADATA = new Text("metadata:");
+  /** The number of the matrix rows */
+  public final static Text METADATA_ROWS = new Text("metadata:rows");
+  /** The number of the matrix columns */
+  public final static Text METADATA_COLUMNS = new Text("metadata:columns");
+  /** The type of the matrix */
+  public final static Text METADATA_TYPE = new Text("metadata:type");
+
+  /** plus operator */
+  public final static String PLUS = "+";
+  /** minus operator */
+  public final static String MINUS = "-";
+
+  /** Default columnfamily name */
+  public final static Text COLUMN = new Text("column:");
+  /** The numerator version of the fraction matrix */
+  public final static Text NUMERATOR = new Text("numerator:");
+  /** The denominator version of the fration matrix */
+  public final static Text DENOMINATOR = new Text("denominator:");
+  /** The original version of the fraction matrix */
+  public final static Text ORIGINAL = new Text("original:");
+  /** The lower matrix version of the triangular matrix */
+  public final static Text LOWER = new Text("lower:");
+  /** The upper matrix version of the triangular matrix */
+  public final static Text UPPER = new Text("upper:");
+
+  /** A determinant value record */
+  public final static Text DETERMINANT = new Text("determinant");
+
+  /** Temporary random matices name-head */
+  public final static String RANDOM = "random";
+  /** Temporary result matices name-head */
+  public final static String RESULT = "result";
+}

Added: incubator/hama/trunk/src/java/org/apache/hama/Decomposition.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/java/org/apache/hama/Decomposition.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/java/org/apache/hama/Decomposition.java (added)
+++ incubator/hama/trunk/src/java/org/apache/hama/Decomposition.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,34 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama;
+
+/**
+ * A representation of the literals of the enumeration '<em><b>Decomposition technique</b></em>'
+ */
+public enum Decomposition {
+
+  /** Cholesky Decomposition */
+  Cholesky,
+  /** Crout Decomposition */
+  Crout,
+  /** Doolittle Decomposition */
+  Doolittle
+
+}

Added: incubator/hama/trunk/src/java/org/apache/hama/FeatureVector.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/java/org/apache/hama/FeatureVector.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/java/org/apache/hama/FeatureVector.java (added)
+++ incubator/hama/trunk/src/java/org/apache/hama/FeatureVector.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,102 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama;
+
+import java.util.Map;
+import java.util.SortedMap;
+
+import org.apache.log4j.Logger;
+
+/**
+ * A feature vector. Features are dimension-value pairs. This class implements a
+ * simple dictionary data structure to map dimensions onto their values. Note
+ * that for convenience, features do not have be sorted according to their
+ * dimensions at this point. The SVMLightTrainer class has an option for sorting
+ * input vectors prior to training.
+ */
+public class FeatureVector {
+  static final Logger LOG = Logger.getLogger(FeatureVector.class);
+  protected int[] m_dims;
+  protected double[] m_vals;
+
+  public FeatureVector(SortedMap<Integer, Double> result) {
+    this.m_dims = new int[result.keySet().size()];
+    this.m_vals = new double[result.keySet().size()];
+
+    int i = 0;
+    for (Map.Entry<Integer, Double> f : result.entrySet()) {
+      this.m_dims[i] = f.getKey();
+      this.m_vals[i] = f.getValue();
+      i++;
+    }
+  }
+
+  /**
+   * Returns the cosine similarity between two feature vectors.
+   */
+  public double getCosine(FeatureVector v) {
+    double cosine = 0.0;
+    int dim;
+    double q_i, d_i;
+    for (int i = 0; i < Math.min(this.size(), v.size()); i++) {
+      dim = v.getDimAt(i);
+      q_i = v.getValueAt(dim);
+      d_i = this.getValueAt(dim);
+      cosine += q_i * d_i;
+    }
+    return cosine / (this.getL2Norm() * v.getL2Norm());
+  }
+
+  /**
+   * Returns the linear norm factor of this vector's values (i.e., the sum of
+   * it's values).
+   */
+  public double getL1Norm() {
+    double sum = 0.0;
+    for (int i = 0; i < m_vals.length; i++) {
+      sum += m_vals[i];
+    }
+    return sum;
+  }
+
+  /**
+   * Returns the L2 norm factor of this vector's values.
+   */
+  public double getL2Norm() {
+    double square_sum = 0.0;
+    for (int i = 0; i < m_vals.length; i++) {
+      square_sum += (m_vals[i] * m_vals[i]);
+    }
+    return Math.sqrt(square_sum);
+  }
+
+  public int getDimAt(int index) {
+    return m_dims[index];
+  }
+
+  public double getValueAt(int index) {
+    return m_vals[index];
+  }
+
+  public int size() {
+    return m_dims.length;
+  }
+
+}

Added: incubator/hama/trunk/src/java/org/apache/hama/FractionMatrix.java
URL: http://svn.apache.org/viewvc/incubator/hama/trunk/src/java/org/apache/hama/FractionMatrix.java?rev=671120&view=auto
==============================================================================
--- incubator/hama/trunk/src/java/org/apache/hama/FractionMatrix.java (added)
+++ incubator/hama/trunk/src/java/org/apache/hama/FractionMatrix.java Tue Jun 24 03:36:21 2008
@@ -0,0 +1,228 @@
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hama;
+
+import java.io.IOException;
+
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.hbase.HColumnDescriptor;
+import org.apache.hadoop.hbase.HTableDescriptor;
+import org.apache.hadoop.hbase.client.HTable;
+import org.apache.hadoop.hbase.io.BatchUpdate;
+import org.apache.hadoop.io.Text;
+import org.apache.hadoop.mapred.JobClient;
+import org.apache.hadoop.mapred.JobConf;
+import org.apache.hama.algebra.CroutDecompositionMap;
+import org.apache.hama.mapred.FractionMatrixInputFormat;
+import org.apache.hama.mapred.MatrixOutputFormat;
+
+/**
+ * A library for mathematical operations on matrices of fractions.
+ */
+public class FractionMatrix extends AbstractMatrix {
+
+  /**
+   * Construct
+   * 
+   * @param conf configuration object
+   */
+  public FractionMatrix(Configuration conf) {
+    setConfiguration(conf);
+  }
+
+  /**
+   * Construct an fraction matrix
+   * 
+   * @param conf configuration object
+   * @param matrixName the name of the matrix
+   */
+  public FractionMatrix(Configuration conf, Text matrixName) {
+    try {
+      setConfiguration(conf);
+      this.matrixName = matrixName;
+
+      if (!admin.tableExists(matrixName)) {
+        tableDesc = new HTableDescriptor(matrixName.toString());
+        tableDesc.addFamily(new HColumnDescriptor(Constants.NUMERATOR.toString()));
+        tableDesc.addFamily(new HColumnDescriptor(Constants.DENOMINATOR.toString()));
+        tableDesc.addFamily(new HColumnDescriptor(Constants.ORIGINAL.toString()));
+        create();
+      }
+
+      table = new HTable(config, matrixName);
+    } catch (Exception e) {
+      e.printStackTrace();
+    }
+  }
+
+  /** {@inheritDoc} */
+  public Matrix multiply(Matrix b) {
+    return null;
+  }
+
+  /** {@inheritDoc} */
+  public Matrix addition(Matrix b) {
+    return null;
+  }
+
+  /** {@inheritDoc} */
+  public double determinant() {
+    return 0;
+  }
+
+  /** {@inheritDoc} */
+  public Matrix subtraction(Matrix b) {
+    return null;
+  }
+  
+  /** {@inheritDoc} */
+  public TriangularMatrix decompose(Decomposition technique) {
+    if(technique.equals(Decomposition.Crout)) 
+       return croutDecompose();
+    else return null;
+  }
+
+  private TriangularMatrix croutDecompose() {
+    JobConf jobConf = new JobConf(config);
+    jobConf.setJobName("Crout Decomposition");
+
+    String output = Constants.RESULT + System.currentTimeMillis();
+    TriangularMatrix b = new TriangularMatrix(config, new Text(output));
+
+    jobConf.setInputFormat(FractionMatrixInputFormat.class);
+    jobConf.setOutputFormat(MatrixOutputFormat.class);
+    CroutDecompositionMap.initJob(getName(), output, CroutDecompositionMap.class,
+        jobConf);
+
+    jobConf.setNumMapTasks(mapper);
+    jobConf.setNumReduceTasks(reducer);
+    
+    try {
+      JobClient.runJob(jobConf);
+    } catch (IOException e) {
+      LOG.info(e);
+    }
+
+    return b;
+  }
+
+  /**
+   * Gets the entry value of numerator matrix N(i, j)
+   * 
+   * @param i ith row of numerator matrix N
+   * @param j jth column of numerator matrix N
+   * @return the value of entry
+   */
+  public double getFromNumerator(int i, int j) {
+    try {
+      return toDouble(table.get(new Text(String.valueOf(i)), new Text(
+          Constants.NUMERATOR + String.valueOf(j))).getValue());
+    } catch (IOException e) {
+      LOG.error(e, e);
+      return 0;
+    }
+  }
+
+  /**
+   * Sets the double value of numerator matrix N(i, j)
+   * 
+   * @param i ith row of numerator matrix N
+   * @param j jth column of numerator matrix N
+   * @param d the value of entry
+   */
+  public void setToNumerator(int i, int j, double d) {
+    BatchUpdate b = new BatchUpdate(new Text(String.valueOf(i)));
+    b.put(new Text(Constants.NUMERATOR + String.valueOf(j)), toBytes(d));
+    try {
+      table.commit(b);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /**
+   * Gets the entry value of denominator matrix D(i, j)
+   * 
+   * @param i ith row of denominator matrix D
+   * @param j jth column of denominator matrix D
+   * @return the value of entry
+   */
+  public double getFromDenominator(int i, int j) {
+    try {
+      return toDouble(table.get(new Text(String.valueOf(i)), new Text(
+          Constants.DENOMINATOR + String.valueOf(j))).getValue());
+    } catch (IOException e) {
+      LOG.error(e, e);
+      return 0;
+    }
+  }
+
+  /**
+   * Sets the double value of denominator matrix D(i, j)
+   * 
+   * @param i ith row of denominator matrix D
+   * @param j jth column of denominator matrix D
+   * @param d the value of entry
+   */
+  public void setToDenominator(int i, int j, double d) {
+    BatchUpdate b = new BatchUpdate(new Text(String.valueOf(i)));
+    b.put(new Text(Constants.DENOMINATOR + String.valueOf(j)), toBytes(d));
+    try {
+      table.commit(b);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /**
+   * Sets the double value of original matrix O(i, j)
+   * 
+   * @param i ith row of original matrix O
+   * @param j jth column of original matrix O
+   * @param d the value of entry
+   */
+  public void setToOriginal(int i, int j, double d) {
+    BatchUpdate b = new BatchUpdate(new Text(String.valueOf(i)));
+    b.put(new Text(Constants.ORIGINAL + String.valueOf(j)), toBytes(d));
+    try {
+      table.commit(b);
+    } catch (IOException e) {
+      LOG.error(e, e);
+    }
+  }
+
+  /**
+   * Gets the entry value of original matrix O(i, j)
+   * 
+   * @param i ith row of original matrix O
+   * @param j jth column of original matrix O
+   * @return a double
+   */
+  public double getFromOriginal(int i, int j) {
+    try {
+      return toDouble(table.get(new Text(String.valueOf(i)),
+          new Text(Constants.ORIGINAL + String.valueOf(j))).getValue());
+    } catch (IOException e) {
+      LOG.error(e, e);
+      return 0;
+    }
+  }
+
+}