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Posted to commits@hudi.apache.org by "Zhaojing Yu (Jira)" <ji...@apache.org> on 2022/10/01 12:13:00 UTC
[jira] [Updated] (HUDI-4586) Address S3 timeouts in Bloom Index with metadata table
[ https://issues.apache.org/jira/browse/HUDI-4586?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Zhaojing Yu updated HUDI-4586:
------------------------------
Fix Version/s: 0.13.0
(was: 0.12.1)
> Address S3 timeouts in Bloom Index with metadata table
> ------------------------------------------------------
>
> Key: HUDI-4586
> URL: https://issues.apache.org/jira/browse/HUDI-4586
> Project: Apache Hudi
> Issue Type: Improvement
> Reporter: Ethan Guo
> Assignee: Ethan Guo
> Priority: Blocker
> Labels: pull-request-available
> Fix For: 0.13.0
>
> Attachments: Screen Shot 2022-08-15 at 17.39.01.png
>
>
> For partitioned table, there are significant number of S3 requests timeout causing the upserts to fail when using Bloom Index with metadata table.
> {code:java}
> Load meta index key ranges for file slices: hudi
> collect at HoodieSparkEngineContext.java:137+details
> org.apache.spark.api.java.AbstractJavaRDDLike.collect(JavaRDDLike.scala:45)
> org.apache.hudi.client.common.HoodieSparkEngineContext.flatMap(HoodieSparkEngineContext.java:137)
> org.apache.hudi.index.bloom.HoodieBloomIndex.loadColumnRangesFromMetaIndex(HoodieBloomIndex.java:213)
> org.apache.hudi.index.bloom.HoodieBloomIndex.getBloomIndexFileInfoForPartitions(HoodieBloomIndex.java:145)
> org.apache.hudi.index.bloom.HoodieBloomIndex.lookupIndex(HoodieBloomIndex.java:123)
> org.apache.hudi.index.bloom.HoodieBloomIndex.tagLocation(HoodieBloomIndex.java:89)
> org.apache.hudi.table.action.commit.HoodieWriteHelper.tag(HoodieWriteHelper.java:49)
> org.apache.hudi.table.action.commit.HoodieWriteHelper.tag(HoodieWriteHelper.java:32)
> org.apache.hudi.table.action.commit.BaseWriteHelper.write(BaseWriteHelper.java:53)
> org.apache.hudi.table.action.commit.SparkUpsertCommitActionExecutor.execute(SparkUpsertCommitActionExecutor.java:45)
> org.apache.hudi.table.HoodieSparkCopyOnWriteTable.upsert(HoodieSparkCopyOnWriteTable.java:113)
> org.apache.hudi.table.HoodieSparkCopyOnWriteTable.upsert(HoodieSparkCopyOnWriteTable.java:97)
> org.apache.hudi.client.SparkRDDWriteClient.upsert(SparkRDDWriteClient.java:155)
> org.apache.hudi.DataSourceUtils.doWriteOperation(DataSourceUtils.java:206)
> org.apache.hudi.HoodieSparkSqlWriter$.write(HoodieSparkSqlWriter.scala:329)
> org.apache.hudi.DefaultSource.createRelation(DefaultSource.scala:183)
> org.apache.spark.sql.execution.datasources.SaveIntoDataSourceCommand.run(SaveIntoDataSourceCommand.scala:45)
> org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult$lzycompute(commands.scala:75)
> org.apache.spark.sql.execution.command.ExecutedCommandExec.sideEffectResult(commands.scala:73)
> org.apache.spark.sql.execution.command.ExecutedCommandExec.executeCollect(commands.scala:84) {code}
> {code:java}
> org.apache.hudi.exception.HoodieException: Exception when reading log file
> at org.apache.hudi.common.table.log.AbstractHoodieLogRecordReader.scanInternal(AbstractHoodieLogRecordReader.java:352)
> at org.apache.hudi.common.table.log.AbstractHoodieLogRecordReader.scan(AbstractHoodieLogRecordReader.java:196)
> at org.apache.hudi.metadata.HoodieMetadataMergedLogRecordReader.getRecordsByKeys(HoodieMetadataMergedLogRecordReader.java:124)
> at org.apache.hudi.metadata.HoodieBackedTableMetadata.readLogRecords(HoodieBackedTableMetadata.java:266)
> at org.apache.hudi.metadata.HoodieBackedTableMetadata.lambda$getRecordsByKeys$1(HoodieBackedTableMetadata.java:222)
> at java.util.HashMap.forEach(HashMap.java:1290)
> at org.apache.hudi.metadata.HoodieBackedTableMetadata.getRecordsByKeys(HoodieBackedTableMetadata.java:209)
> at org.apache.hudi.metadata.BaseTableMetadata.getColumnStats(BaseTableMetadata.java:253)
> at org.apache.hudi.index.bloom.HoodieBloomIndex.lambda$loadColumnRangesFromMetaIndex$cc8e7ca2$1(HoodieBloomIndex.java:224)
> at org.apache.hudi.client.common.HoodieSparkEngineContext.lambda$flatMap$7d470b86$1(HoodieSparkEngineContext.java:137)
> at org.apache.spark.api.java.JavaRDDLike.$anonfun$flatMap$1(JavaRDDLike.scala:125)
> at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:486)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:492)
> at scala.collection.Iterator.foreach(Iterator.scala:943)
> at scala.collection.Iterator.foreach$(Iterator.scala:943)
> at scala.collection.AbstractIterator.foreach(Iterator.scala:1431)
> at scala.collection.generic.Growable.$plus$plus$eq(Growable.scala:62)
> at scala.collection.generic.Growable.$plus$plus$eq$(Growable.scala:53)
> at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:105)
> at scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:49)
> at scala.collection.TraversableOnce.to(TraversableOnce.scala:366)
> at scala.collection.TraversableOnce.to$(TraversableOnce.scala:364)
> at scala.collection.AbstractIterator.to(Iterator.scala:1431)
> at scala.collection.TraversableOnce.toBuffer(TraversableOnce.scala:358)
> at scala.collection.TraversableOnce.toBuffer$(TraversableOnce.scala:358)
> at scala.collection.AbstractIterator.toBuffer(Iterator.scala:1431)
> at scala.collection.TraversableOnce.toArray(TraversableOnce.scala:345)
> at scala.collection.TraversableOnce.toArray$(TraversableOnce.scala:339)
> at scala.collection.AbstractIterator.toArray(Iterator.scala:1431)
> at org.apache.spark.rdd.RDD.$anonfun$collect$2(RDD.scala:1030)
> at org.apache.spark.SparkContext.$anonfun$runJob$5(SparkContext.scala:2254)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
> at org.apache.spark.scheduler.Task.run(Task.scala:131)
> at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:506)
> at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1491)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:509)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
> at java.lang.Thread.run(Thread.java:750)
> Caused by: org.apache.hudi.exception.HoodieIOException: IOException when reading logblock from log file HoodieLogFile{pathStr='s3a://<>/.hoodie/metadata/column_stats/.col-stats-0000_00000000000000.log.4_5-116-20141', fileLen=-1}
> at org.apache.hudi.common.table.log.HoodieLogFileReader.next(HoodieLogFileReader.java:389)
> at org.apache.hudi.common.table.log.HoodieLogFormatReader.next(HoodieLogFormatReader.java:123)
> at org.apache.hudi.common.table.log.AbstractHoodieLogRecordReader.scanInternal(AbstractHoodieLogRecordReader.java:229)
> ... 38 more
> Caused by: org.apache.hadoop.fs.s3a.AWSClientIOException: re-open s3a://<>/.hoodie/metadata/column_stats/.col-stats-0000_00000000000000.log.4_5-116-20141 at 475916 on s3a://<>/.hoodie/metadata/column_stats/.col-stats-0000_00000000000000.log.4_5-116-20141: com.amazonaws.SdkClientException: Unable to execute HTTP request: The target server failed to respond: Unable to execute HTTP request: The target server failed to respond
> at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:208)
> at org.apache.hadoop.fs.s3a.Invoker.once(Invoker.java:117)
> at org.apache.hadoop.fs.s3a.S3AInputStream.reopen(S3AInputStream.java:226)
> at org.apache.hadoop.fs.s3a.S3AInputStream.lambda$lazySeek$1(S3AInputStream.java:392)
> at org.apache.hadoop.fs.s3a.Invoker.lambda$maybeRetry$3(Invoker.java:228)
> at org.apache.hadoop.fs.s3a.Invoker.once(Invoker.java:115)
> at org.apache.hadoop.fs.s3a.Invoker.maybeRetry(Invoker.java:354)
> at org.apache.hadoop.fs.s3a.Invoker.maybeRetry(Invoker.java:226)
> at org.apache.hadoop.fs.s3a.Invoker.maybeRetry(Invoker.java:270)
> at org.apache.hadoop.fs.s3a.S3AInputStream.lazySeek(S3AInputStream.java:384)
> at org.apache.hadoop.fs.s3a.S3AInputStream.read(S3AInputStream.java:418)
> at java.io.FilterInputStream.read(FilterInputStream.java:83)
> at java.io.DataInputStream.readInt(DataInputStream.java:387)
> at org.apache.hudi.common.table.log.block.HoodieLogBlock.getLogMetadata(HoodieLogBlock.java:228)
> at org.apache.hudi.common.table.log.HoodieLogFileReader.readBlock(HoodieLogFileReader.java:193)
> at org.apache.hudi.common.table.log.HoodieLogFileReader.next(HoodieLogFileReader.java:387)
> ... 40 more
> Caused by: com.amazonaws.SdkClientException: Unable to execute HTTP request: The target server failed to respond
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleRetryableException(AmazonHttpClient.java:1216)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1162)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:811)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:779)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:753)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:713)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:695)
> at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:559)
> at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:539)
> at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5437)
> at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5384)
> at com.amazonaws.services.s3.AmazonS3Client.getObject(AmazonS3Client.java:1519)
> at org.apache.hadoop.fs.s3a.S3AInputStream.lambda$reopen$0(S3AInputStream.java:227)
> at org.apache.hadoop.fs.s3a.Invoker.once(Invoker.java:115)
> ... 54 more
> Caused by: com.amazonaws.thirdparty.apache.http.NoHttpResponseException: The target server failed to respond
> at com.amazonaws.thirdparty.apache.http.impl.conn.DefaultHttpResponseParser.parseHead(DefaultHttpResponseParser.java:141)
> at com.amazonaws.thirdparty.apache.http.impl.conn.DefaultHttpResponseParser.parseHead(DefaultHttpResponseParser.java:56)
> at com.amazonaws.thirdparty.apache.http.impl.io.AbstractMessageParser.parse(AbstractMessageParser.java:259)
> at com.amazonaws.thirdparty.apache.http.impl.DefaultBHttpClientConnection.receiveResponseHeader(DefaultBHttpClientConnection.java:163)
> at com.amazonaws.thirdparty.apache.http.impl.conn.CPoolProxy.receiveResponseHeader(CPoolProxy.java:157)
> at com.amazonaws.thirdparty.apache.http.protocol.HttpRequestExecutor.doReceiveResponse(HttpRequestExecutor.java:273)
> at com.amazonaws.http.protocol.SdkHttpRequestExecutor.doReceiveResponse(SdkHttpRequestExecutor.java:82)
> at com.amazonaws.thirdparty.apache.http.protocol.HttpRequestExecutor.execute(HttpRequestExecutor.java:125)
> at com.amazonaws.thirdparty.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:272)
> at com.amazonaws.thirdparty.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:186)
> at com.amazonaws.thirdparty.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:185)
> at com.amazonaws.thirdparty.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:83)
> at com.amazonaws.thirdparty.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:56)
> at com.amazonaws.http.apache.client.impl.SdkHttpClient.execute(SdkHttpClient.java:72)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1343)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1154)
> ... 66 more {code}
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