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Posted to site-commits@maven.apache.org by kh...@apache.org on 2015/03/04 22:52:18 UTC

svn commit: r942365 [4/5] - in /websites/production/maven/content/plugins-archives/maven-patch-plugin-LATEST: ./ apidocs/ apidocs/org/ apidocs/org/apache/ apidocs/org/apache/maven/ apidocs/org/apache/maven/plugin/ apidocs/org/apache/maven/plugin/patch/...

Added: websites/production/maven/content/plugins-archives/maven-patch-plugin-LATEST/xref/org/apache/maven/plugin/patch/ApplyMojo.html
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--- websites/production/maven/content/plugins-archives/maven-patch-plugin-LATEST/xref/org/apache/maven/plugin/patch/ApplyMojo.html (added)
+++ websites/production/maven/content/plugins-archives/maven-patch-plugin-LATEST/xref/org/apache/maven/plugin/patch/ApplyMojo.html Wed Mar  4 21:52:17 2015
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<head><meta http-equiv="content-type" content="text/html; charset=UTF-8" />
+<title>ApplyMojo xref</title>
+<link type="text/css" rel="stylesheet" href="../../../../../stylesheet.css" />
+</head>
+<body>
+<div id="overview"><a href="../../../../../../apidocs/org/apache/maven/plugin/patch/ApplyMojo.html">View Javadoc</a></div><pre>
+<a class="jxr_linenumber" name="L1" href="#L1">1</a>   <strong class="jxr_keyword">package</strong> org.apache.maven.plugin.patch;
+<a class="jxr_linenumber" name="L2" href="#L2">2</a>   
+<a class="jxr_linenumber" name="L3" href="#L3">3</a>   <em class="jxr_comment">/*</em>
+<a class="jxr_linenumber" name="L4" href="#L4">4</a>   <em class="jxr_comment"> * Licensed to the Apache Software Foundation (ASF) under one</em>
+<a class="jxr_linenumber" name="L5" href="#L5">5</a>   <em class="jxr_comment"> * or more contributor license agreements.  See the NOTICE file</em>
+<a class="jxr_linenumber" name="L6" href="#L6">6</a>   <em class="jxr_comment"> * distributed with this work for additional information</em>
+<a class="jxr_linenumber" name="L7" href="#L7">7</a>   <em class="jxr_comment"> * regarding copyright ownership.  The ASF licenses this file</em>
+<a class="jxr_linenumber" name="L8" href="#L8">8</a>   <em class="jxr_comment"> * to you under the Apache License, Version 2.0 (the</em>
+<a class="jxr_linenumber" name="L9" href="#L9">9</a>   <em class="jxr_comment"> * "License"); you may not use this file except in compliance</em>
+<a class="jxr_linenumber" name="L10" href="#L10">10</a>  <em class="jxr_comment"> * with the License.  You may obtain a copy of the License at</em>
+<a class="jxr_linenumber" name="L11" href="#L11">11</a>  <em class="jxr_comment"> *</em>
+<a class="jxr_linenumber" name="L12" href="#L12">12</a>  <em class="jxr_comment"> *   <a href="http://www.apache.org/licenses/LICENSE-2." target="alexandria_uri">http://www.apache.org/licenses/LICENSE-2.</a>0</em>
+<a class="jxr_linenumber" name="L13" href="#L13">13</a>  <em class="jxr_comment"> *</em>
+<a class="jxr_linenumber" name="L14" href="#L14">14</a>  <em class="jxr_comment"> * Unless required by applicable law or agreed to in writing,</em>
+<a class="jxr_linenumber" name="L15" href="#L15">15</a>  <em class="jxr_comment"> * software distributed under the License is distributed on an</em>
+<a class="jxr_linenumber" name="L16" href="#L16">16</a>  <em class="jxr_comment"> * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY</em>
+<a class="jxr_linenumber" name="L17" href="#L17">17</a>  <em class="jxr_comment"> * KIND, either express or implied.  See the License for the</em>
+<a class="jxr_linenumber" name="L18" href="#L18">18</a>  <em class="jxr_comment"> * specific language governing permissions and limitations</em>
+<a class="jxr_linenumber" name="L19" href="#L19">19</a>  <em class="jxr_comment"> * under the License.</em>
+<a class="jxr_linenumber" name="L20" href="#L20">20</a>  <em class="jxr_comment"> */</em>
+<a class="jxr_linenumber" name="L21" href="#L21">21</a>  
+<a class="jxr_linenumber" name="L22" href="#L22">22</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugin.AbstractMojo;
+<a class="jxr_linenumber" name="L23" href="#L23">23</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugin.MojoExecutionException;
+<a class="jxr_linenumber" name="L24" href="#L24">24</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugin.MojoFailureException;
+<a class="jxr_linenumber" name="L25" href="#L25">25</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugins.annotations.LifecyclePhase;
+<a class="jxr_linenumber" name="L26" href="#L26">26</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugins.annotations.Mojo;
+<a class="jxr_linenumber" name="L27" href="#L27">27</a>  <strong class="jxr_keyword">import</strong> org.apache.maven.plugins.annotations.Parameter;
+<a class="jxr_linenumber" name="L28" href="#L28">28</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.FileUtils;
+<a class="jxr_linenumber" name="L29" href="#L29">29</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.IOUtil;
+<a class="jxr_linenumber" name="L30" href="#L30">30</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.cli.CommandLineException;
+<a class="jxr_linenumber" name="L31" href="#L31">31</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.cli.CommandLineUtils;
+<a class="jxr_linenumber" name="L32" href="#L32">32</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.cli.Commandline;
+<a class="jxr_linenumber" name="L33" href="#L33">33</a>  <strong class="jxr_keyword">import</strong> org.codehaus.plexus.util.cli.StreamConsumer;
+<a class="jxr_linenumber" name="L34" href="#L34">34</a>  
+<a class="jxr_linenumber" name="L35" href="#L35">35</a>  <strong class="jxr_keyword">import</strong> java.io.File;
+<a class="jxr_linenumber" name="L36" href="#L36">36</a>  <strong class="jxr_keyword">import</strong> java.io.FileNotFoundException;
+<a class="jxr_linenumber" name="L37" href="#L37">37</a>  <strong class="jxr_keyword">import</strong> java.io.FileWriter;
+<a class="jxr_linenumber" name="L38" href="#L38">38</a>  <strong class="jxr_keyword">import</strong> java.io.IOException;
+<a class="jxr_linenumber" name="L39" href="#L39">39</a>  <strong class="jxr_keyword">import</strong> java.io.StringWriter;
+<a class="jxr_linenumber" name="L40" href="#L40">40</a>  <strong class="jxr_keyword">import</strong> java.util.ArrayList;
+<a class="jxr_linenumber" name="L41" href="#L41">41</a>  <strong class="jxr_keyword">import</strong> java.util.Collections;
+<a class="jxr_linenumber" name="L42" href="#L42">42</a>  <strong class="jxr_keyword">import</strong> java.util.Iterator;
+<a class="jxr_linenumber" name="L43" href="#L43">43</a>  <strong class="jxr_keyword">import</strong> java.util.LinkedHashMap;
+<a class="jxr_linenumber" name="L44" href="#L44">44</a>  <strong class="jxr_keyword">import</strong> java.util.List;
+<a class="jxr_linenumber" name="L45" href="#L45">45</a>  <strong class="jxr_keyword">import</strong> java.util.Map;
+<a class="jxr_linenumber" name="L46" href="#L46">46</a>  <strong class="jxr_keyword">import</strong> java.util.Map.Entry;
+<a class="jxr_linenumber" name="L47" href="#L47">47</a>  
+<a class="jxr_linenumber" name="L48" href="#L48">48</a>  <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L49" href="#L49">49</a>  <em class="jxr_javadoccomment"> * Apply one or more patches to project sources.</em>
+<a class="jxr_linenumber" name="L50" href="#L50">50</a>  <em class="jxr_javadoccomment"> */</em>
+<a class="jxr_linenumber" name="L51" href="#L51">51</a>  @Mojo( name = <span class="jxr_string">"apply"</span>, defaultPhase = LifecyclePhase.PROCESS_SOURCES )
+<a class="jxr_linenumber" name="L52" href="#L52">52</a>  <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">class</strong> <a href="../../../../../org/apache/maven/plugin/patch/ApplyMojo.html">ApplyMojo</a>
+<a class="jxr_linenumber" name="L53" href="#L53">53</a>      <strong class="jxr_keyword">extends</strong> AbstractMojo
+<a class="jxr_linenumber" name="L54" href="#L54">54</a>  {
+<a class="jxr_linenumber" name="L55" href="#L55">55</a>  
+<a class="jxr_linenumber" name="L56" href="#L56">56</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> List PATCH_FAILURE_WATCH_PHRASES;
+<a class="jxr_linenumber" name="L57" href="#L57">57</a>  
+<a class="jxr_linenumber" name="L58" href="#L58">58</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> List DEFAULT_IGNORED_PATCHES;
+<a class="jxr_linenumber" name="L59" href="#L59">59</a>  
+<a class="jxr_linenumber" name="L60" href="#L60">60</a>      <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">static</strong> <strong class="jxr_keyword">final</strong> List DEFAULT_IGNORED_PATCH_PATTERNS;
+<a class="jxr_linenumber" name="L61" href="#L61">61</a>  
+<a class="jxr_linenumber" name="L62" href="#L62">62</a>      <strong class="jxr_keyword">static</strong>
+<a class="jxr_linenumber" name="L63" href="#L63">63</a>      {
+<a class="jxr_linenumber" name="L64" href="#L64">64</a>          List watches = <strong class="jxr_keyword">new</strong> ArrayList();
+<a class="jxr_linenumber" name="L65" href="#L65">65</a>  
+<a class="jxr_linenumber" name="L66" href="#L66">66</a>          watches.add( <span class="jxr_string">"fail"</span> );
+<a class="jxr_linenumber" name="L67" href="#L67">67</a>          watches.add( <span class="jxr_string">"skip"</span> );
+<a class="jxr_linenumber" name="L68" href="#L68">68</a>          watches.add( <span class="jxr_string">"reject"</span> );
+<a class="jxr_linenumber" name="L69" href="#L69">69</a>  
+<a class="jxr_linenumber" name="L70" href="#L70">70</a>          PATCH_FAILURE_WATCH_PHRASES = watches;
+<a class="jxr_linenumber" name="L71" href="#L71">71</a>  
+<a class="jxr_linenumber" name="L72" href="#L72">72</a>          List ignored = <strong class="jxr_keyword">new</strong> ArrayList();
+<a class="jxr_linenumber" name="L73" href="#L73">73</a>  
+<a class="jxr_linenumber" name="L74" href="#L74">74</a>          ignored.add( <span class="jxr_string">".svn"</span> );
+<a class="jxr_linenumber" name="L75" href="#L75">75</a>          ignored.add( <span class="jxr_string">"CVS"</span> );
+<a class="jxr_linenumber" name="L76" href="#L76">76</a>  
+<a class="jxr_linenumber" name="L77" href="#L77">77</a>          DEFAULT_IGNORED_PATCHES = ignored;
+<a class="jxr_linenumber" name="L78" href="#L78">78</a>  
+<a class="jxr_linenumber" name="L79" href="#L79">79</a>          List ignoredPatterns = <strong class="jxr_keyword">new</strong> ArrayList();
+<a class="jxr_linenumber" name="L80" href="#L80">80</a>  
+<a class="jxr_linenumber" name="L81" href="#L81">81</a>          ignoredPatterns.add( <span class="jxr_string">".svn/**"</span> );
+<a class="jxr_linenumber" name="L82" href="#L82">82</a>          ignoredPatterns.add( <span class="jxr_string">"CVS/**"</span> );
+<a class="jxr_linenumber" name="L83" href="#L83">83</a>  
+<a class="jxr_linenumber" name="L84" href="#L84">84</a>          DEFAULT_IGNORED_PATCH_PATTERNS = ignoredPatterns;
+<a class="jxr_linenumber" name="L85" href="#L85">85</a>      }
+<a class="jxr_linenumber" name="L86" href="#L86">86</a>  
+<a class="jxr_linenumber" name="L87" href="#L87">87</a>      <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L88" href="#L88">88</a>  <em class="jxr_javadoccomment">     * Whether to exclude default ignored patch items, such as &lt;code&gt;.svn&lt;/code&gt; or &lt;code&gt;CVS&lt;/code&gt; directories.</em>
+<a class="jxr_linenumber" name="L89" href="#L89">89</a>  <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L90" href="#L90">90</a>      @Parameter( defaultValue = <span class="jxr_string">"true"</span> )
+<a class="jxr_linenumber" name="L91" href="#L91">91</a>      <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> useDefaultIgnores;
+<a class="jxr_linenumber" name="L92" href="#L92">92</a>  
+<a class="jxr_linenumber" name="L93" href="#L93">93</a>      <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L94" href="#L94">94</a>  <em class="jxr_javadoccomment">     * The list of patch file names, supplying the order in which patches should be applied. The path names in this list</em>
+<a class="jxr_linenumber" name="L95" href="#L95">95</a>  <em class="jxr_javadoccomment">     * must be relative to the base directory specified by the parameter &lt;code&gt;patchDirectory&lt;/code&gt;. This parameter</em>
+<a class="jxr_linenumber" name="L96" href="#L96">96</a>  <em class="jxr_javadoccomment">     * is mutually exclusive with the &lt;code&gt;patchfile&lt;/code&gt; parameter.</em>
+<a class="jxr_linenumber" name="L97" href="#L97">97</a>  <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L98" href="#L98">98</a>      @Parameter
+<a class="jxr_linenumber" name="L99" href="#L99">99</a>      <strong class="jxr_keyword">protected</strong> List patches;
+<a class="jxr_linenumber" name="L100" href="#L100">100</a> 
+<a class="jxr_linenumber" name="L101" href="#L101">101</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L102" href="#L102">102</a> <em class="jxr_javadoccomment">     * Whether to skip this goal's execution.</em>
+<a class="jxr_linenumber" name="L103" href="#L103">103</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L104" href="#L104">104</a>     @Parameter( alias = <span class="jxr_string">"patch.apply.skip"</span>, defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L105" href="#L105">105</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> skipApplication;
+<a class="jxr_linenumber" name="L106" href="#L106">106</a> 
+<a class="jxr_linenumber" name="L107" href="#L107">107</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L108" href="#L108">108</a> <em class="jxr_javadoccomment">     * Flag to enable/disable optimization file from being written. This file tracks the patches that were applied the</em>
+<a class="jxr_linenumber" name="L109" href="#L109">109</a> <em class="jxr_javadoccomment">     * last time this goal actually executed. It is required for cases where project-sources optimizations are enabled,</em>
+<a class="jxr_linenumber" name="L110" href="#L110">110</a> <em class="jxr_javadoccomment">     * since project-sources will not be re-unpacked if they are at least as fresh as the source archive. If we avoid</em>
+<a class="jxr_linenumber" name="L111" href="#L111">111</a> <em class="jxr_javadoccomment">     * re-unpacking project sources, we need to make sure we don't reapply patches.&lt;br/&gt; &lt;strong&gt;Note:&lt;/strong&gt; If the</em>
+<a class="jxr_linenumber" name="L112" href="#L112">112</a> <em class="jxr_javadoccomment">     * list of patches changes and this flag is enabled, a "&lt;code&gt;mvn clean&lt;/code&gt;" must be executed before the next</em>
+<a class="jxr_linenumber" name="L113" href="#L113">113</a> <em class="jxr_javadoccomment">     * build, to remove the tracking file.</em>
+<a class="jxr_linenumber" name="L114" href="#L114">114</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L115" href="#L115">115</a>     @Parameter( defaultValue = <span class="jxr_string">"true"</span> )
+<a class="jxr_linenumber" name="L116" href="#L116">116</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> optimizations;
+<a class="jxr_linenumber" name="L117" href="#L117">117</a> 
+<a class="jxr_linenumber" name="L118" href="#L118">118</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L119" href="#L119">119</a> <em class="jxr_javadoccomment">     * This is the tracking file used to maintain a list of the patches applied to the unpacked project sources which</em>
+<a class="jxr_linenumber" name="L120" href="#L120">120</a> <em class="jxr_javadoccomment">     * are currently in the target directory. If this file is present, and project-source unpacking is optimized</em>
+<a class="jxr_linenumber" name="L121" href="#L121">121</a> <em class="jxr_javadoccomment">     * (meaning it won't re-unpack unless the project-sources archive is newer), this goal will not execute and no</em>
+<a class="jxr_linenumber" name="L122" href="#L122">122</a> <em class="jxr_javadoccomment">     * patches will be applied in the current build.</em>
+<a class="jxr_linenumber" name="L123" href="#L123">123</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L124" href="#L124">124</a>     @Parameter( defaultValue = <span class="jxr_string">"${project.build.directory}/optimization-files/patches-applied.txt"</span> )
+<a class="jxr_linenumber" name="L125" href="#L125">125</a>     <strong class="jxr_keyword">private</strong> File patchTrackingFile;
+<a class="jxr_linenumber" name="L126" href="#L126">126</a> 
+<a class="jxr_linenumber" name="L127" href="#L127">127</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L128" href="#L128">128</a> <em class="jxr_javadoccomment">     * The target directory for applying patches. Files in this directory will be modified.</em>
+<a class="jxr_linenumber" name="L129" href="#L129">129</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L130" href="#L130">130</a>     @Parameter( alias = <span class="jxr_string">"patchTargetDir"</span>, defaultValue = <span class="jxr_string">"${project.build.sourceDirectory}"</span> )
+<a class="jxr_linenumber" name="L131" href="#L131">131</a>     <strong class="jxr_keyword">private</strong> File targetDirectory;
+<a class="jxr_linenumber" name="L132" href="#L132">132</a> 
+<a class="jxr_linenumber" name="L133" href="#L133">133</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L134" href="#L134">134</a> <em class="jxr_javadoccomment">     * Flag being &lt;code&gt;true&lt;/code&gt; if the desired behavior is to fail the build on the first failed patch detected.</em>
+<a class="jxr_linenumber" name="L135" href="#L135">135</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L136" href="#L136">136</a>     @Parameter( defaultValue = <span class="jxr_string">"true"</span> )
+<a class="jxr_linenumber" name="L137" href="#L137">137</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> failFast;
+<a class="jxr_linenumber" name="L138" href="#L138">138</a> 
+<a class="jxr_linenumber" name="L139" href="#L139">139</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L140" href="#L140">140</a> <em class="jxr_javadoccomment">     * Setting natural order processing to &lt;code&gt;true&lt;/code&gt; will cause all patches in a directory to be processed in</em>
+<a class="jxr_linenumber" name="L141" href="#L141">141</a> <em class="jxr_javadoccomment">     * a natural order alleviating the need to declare patches directly in the project file.</em>
+<a class="jxr_linenumber" name="L142" href="#L142">142</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L143" href="#L143">143</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L144" href="#L144">144</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> naturalOrderProcessing;
+<a class="jxr_linenumber" name="L145" href="#L145">145</a> 
+<a class="jxr_linenumber" name="L146" href="#L146">146</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L147" href="#L147">147</a> <em class="jxr_javadoccomment">     * When the &lt;code&gt;strictPatching&lt;/code&gt; flag is set, this parameter is useful to mark certain contents of the</em>
+<a class="jxr_linenumber" name="L148" href="#L148">148</a> <em class="jxr_javadoccomment">     * patch-source directory that should be ignored without causing the build to fail.</em>
+<a class="jxr_linenumber" name="L149" href="#L149">149</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L150" href="#L150">150</a>     @Parameter
+<a class="jxr_linenumber" name="L151" href="#L151">151</a>     <strong class="jxr_keyword">private</strong> List ignoredPatches;
+<a class="jxr_linenumber" name="L152" href="#L152">152</a> 
+<a class="jxr_linenumber" name="L153" href="#L153">153</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L154" href="#L154">154</a> <em class="jxr_javadoccomment">     * Flag that, when set to &lt;code&gt;true&lt;/code&gt;, will make sure that all patches included in the &lt;code&gt;patches&lt;/code&gt;</em>
+<a class="jxr_linenumber" name="L155" href="#L155">155</a> <em class="jxr_javadoccomment">     * list must be present and describe the full contents of the patch directory. If &lt;code&gt;strictPatching&lt;/code&gt; is</em>
+<a class="jxr_linenumber" name="L156" href="#L156">156</a> <em class="jxr_javadoccomment">     * set to &lt;code&gt;true&lt;/code&gt;, and the &lt;code&gt;patches&lt;/code&gt; list has a value that does not correspond to a file</em>
+<a class="jxr_linenumber" name="L157" href="#L157">157</a> <em class="jxr_javadoccomment">     * in the patch directory, the build will fail. If &lt;code&gt;strictPatching&lt;/code&gt; is set to &lt;code&gt;true&lt;/code&gt;, and</em>
+<a class="jxr_linenumber" name="L158" href="#L158">158</a> <em class="jxr_javadoccomment">     * the patch directory contains files not listed in the &lt;code&gt;patches&lt;/code&gt; parameter, the build will fail. If</em>
+<a class="jxr_linenumber" name="L159" href="#L159">159</a> <em class="jxr_javadoccomment">     * set to &lt;code&gt;false&lt;/code&gt;, only the patches listed in the &lt;code&gt;patches&lt;/code&gt; parameter that have</em>
+<a class="jxr_linenumber" name="L160" href="#L160">160</a> <em class="jxr_javadoccomment">     * corresponding files will be applied; the rest will be ignored.</em>
+<a class="jxr_linenumber" name="L161" href="#L161">161</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L162" href="#L162">162</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L163" href="#L163">163</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> strictPatching;
+<a class="jxr_linenumber" name="L164" href="#L164">164</a> 
+<a class="jxr_linenumber" name="L165" href="#L165">165</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L166" href="#L166">166</a> <em class="jxr_javadoccomment">     * The number of directories to be stripped from patch file paths, before applying, starting from the leftmost, or</em>
+<a class="jxr_linenumber" name="L167" href="#L167">167</a> <em class="jxr_javadoccomment">     * root-est.</em>
+<a class="jxr_linenumber" name="L168" href="#L168">168</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L169" href="#L169">169</a>     @Parameter( defaultValue = <span class="jxr_string">"0"</span> )
+<a class="jxr_linenumber" name="L170" href="#L170">170</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">int</strong> strip;
+<a class="jxr_linenumber" name="L171" href="#L171">171</a> 
+<a class="jxr_linenumber" name="L172" href="#L172">172</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L173" href="#L173">173</a> <em class="jxr_javadoccomment">     * Whether to ignore whitespaces when applying the patches.</em>
+<a class="jxr_linenumber" name="L174" href="#L174">174</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L175" href="#L175">175</a>     @Parameter( defaultValue = <span class="jxr_string">"true"</span> )
+<a class="jxr_linenumber" name="L176" href="#L176">176</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> ignoreWhitespace;
+<a class="jxr_linenumber" name="L177" href="#L177">177</a> 
+<a class="jxr_linenumber" name="L178" href="#L178">178</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L179" href="#L179">179</a> <em class="jxr_javadoccomment">     * Whether to treat these patches as having reversed source and dest in the patch syntax.</em>
+<a class="jxr_linenumber" name="L180" href="#L180">180</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L181" href="#L181">181</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L182" href="#L182">182</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> reverse;
+<a class="jxr_linenumber" name="L183" href="#L183">183</a> 
+<a class="jxr_linenumber" name="L184" href="#L184">184</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L185" href="#L185">185</a> <em class="jxr_javadoccomment">     * Whether to make backups of the original files before modding them.</em>
+<a class="jxr_linenumber" name="L186" href="#L186">186</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L187" href="#L187">187</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L188" href="#L188">188</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> backups;
+<a class="jxr_linenumber" name="L189" href="#L189">189</a> 
+<a class="jxr_linenumber" name="L190" href="#L190">190</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L191" href="#L191">191</a> <em class="jxr_javadoccomment">     * List of phrases to watch for in the command output from the patch tool. If one is found, it will cause the build</em>
+<a class="jxr_linenumber" name="L192" href="#L192">192</a> <em class="jxr_javadoccomment">     * to fail. All phrases should be lower-case &lt;em&gt;only&lt;/em&gt;. By default, the phrases &lt;code&gt;fail&lt;/code&gt;,</em>
+<a class="jxr_linenumber" name="L193" href="#L193">193</a> <em class="jxr_javadoccomment">     * &lt;code&gt;skip&lt;/code&gt; and &lt;code&gt;reject&lt;/code&gt; are used.</em>
+<a class="jxr_linenumber" name="L194" href="#L194">194</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L195" href="#L195">195</a>     @Parameter
+<a class="jxr_linenumber" name="L196" href="#L196">196</a>     <strong class="jxr_keyword">private</strong> List failurePhrases = PATCH_FAILURE_WATCH_PHRASES;
+<a class="jxr_linenumber" name="L197" href="#L197">197</a> 
+<a class="jxr_linenumber" name="L198" href="#L198">198</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L199" href="#L199">199</a> <em class="jxr_javadoccomment">     * The original file which will be modified by the patch. By default, the patch tool will automatically derive the</em>
+<a class="jxr_linenumber" name="L200" href="#L200">200</a> <em class="jxr_javadoccomment">     * original file from the header of the patch file.</em>
+<a class="jxr_linenumber" name="L201" href="#L201">201</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L202" href="#L202">202</a>     @Parameter
+<a class="jxr_linenumber" name="L203" href="#L203">203</a>     <strong class="jxr_keyword">private</strong> File originalFile;
+<a class="jxr_linenumber" name="L204" href="#L204">204</a> 
+<a class="jxr_linenumber" name="L205" href="#L205">205</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L206" href="#L206">206</a> <em class="jxr_javadoccomment">     * The output file which is the original file, plus modifications from the patch. By default, the file(s) will be</em>
+<a class="jxr_linenumber" name="L207" href="#L207">207</a> <em class="jxr_javadoccomment">     * patched inplace.</em>
+<a class="jxr_linenumber" name="L208" href="#L208">208</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L209" href="#L209">209</a>     @Parameter
+<a class="jxr_linenumber" name="L210" href="#L210">210</a>     <strong class="jxr_keyword">private</strong> File destFile;
+<a class="jxr_linenumber" name="L211" href="#L211">211</a> 
+<a class="jxr_linenumber" name="L212" href="#L212">212</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L213" href="#L213">213</a> <em class="jxr_javadoccomment">     * The single patch file to apply. This parameter is mutually exclusive with the &lt;code&gt;patches&lt;/code&gt; parameter.</em>
+<a class="jxr_linenumber" name="L214" href="#L214">214</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L215" href="#L215">215</a>     @Parameter
+<a class="jxr_linenumber" name="L216" href="#L216">216</a>     <strong class="jxr_keyword">private</strong> File patchFile;
+<a class="jxr_linenumber" name="L217" href="#L217">217</a> 
+<a class="jxr_linenumber" name="L218" href="#L218">218</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L219" href="#L219">219</a> <em class="jxr_javadoccomment">     * The base directory for the file names specified by the parameter &lt;code&gt;patches&lt;/code&gt;.</em>
+<a class="jxr_linenumber" name="L220" href="#L220">220</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L221" href="#L221">221</a>     @Parameter( defaultValue = <span class="jxr_string">"src/main/patches"</span> )
+<a class="jxr_linenumber" name="L222" href="#L222">222</a>     <strong class="jxr_keyword">private</strong> File patchDirectory;
+<a class="jxr_linenumber" name="L223" href="#L223">223</a> 
+<a class="jxr_linenumber" name="L224" href="#L224">224</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L225" href="#L225">225</a> <em class="jxr_javadoccomment">     * When set to &lt;code&gt;true&lt;/code&gt;, the empty files resulting from the patching process are removed. Empty ancestor</em>
+<a class="jxr_linenumber" name="L226" href="#L226">226</a> <em class="jxr_javadoccomment">     * directories are removed as well.</em>
+<a class="jxr_linenumber" name="L227" href="#L227">227</a> <em class="jxr_javadoccomment">     *</em>
+<a class="jxr_linenumber" name="L228" href="#L228">228</a> <em class="jxr_javadoccomment">     * @since 1.1</em>
+<a class="jxr_linenumber" name="L229" href="#L229">229</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L230" href="#L230">230</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L231" href="#L231">231</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> removeEmptyFiles;
+<a class="jxr_linenumber" name="L232" href="#L232">232</a> 
+<a class="jxr_linenumber" name="L233" href="#L233">233</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L234" href="#L234">234</a> <em class="jxr_javadoccomment">     * apply --binary option to patch command line</em>
+<a class="jxr_linenumber" name="L235" href="#L235">235</a> <em class="jxr_javadoccomment">     * @since 1.2</em>
+<a class="jxr_linenumber" name="L236" href="#L236">236</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L237" href="#L237">237</a>     @Parameter( defaultValue = <span class="jxr_string">"false"</span> )
+<a class="jxr_linenumber" name="L238" href="#L238">238</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">boolean</strong> binary;
+<a class="jxr_linenumber" name="L239" href="#L239">239</a> 
+<a class="jxr_linenumber" name="L240" href="#L240">240</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L241" href="#L241">241</a> <em class="jxr_javadoccomment">     * Apply the patches. Give preference to patchFile over patchSourceDir/patches, and preference to originalFile over</em>
+<a class="jxr_linenumber" name="L242" href="#L242">242</a> <em class="jxr_javadoccomment">     * workDir.</em>
+<a class="jxr_linenumber" name="L243" href="#L243">243</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L244" href="#L244">244</a>     <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> execute()
+<a class="jxr_linenumber" name="L245" href="#L245">245</a>         <strong class="jxr_keyword">throws</strong> MojoExecutionException, MojoFailureException
+<a class="jxr_linenumber" name="L246" href="#L246">246</a>     {
+<a class="jxr_linenumber" name="L247" href="#L247">247</a>         <strong class="jxr_keyword">boolean</strong> patchDirEnabled = ( ( patches != <strong class="jxr_keyword">null</strong> ) &amp;&amp; !patches.isEmpty() ) || naturalOrderProcessing;
+<a class="jxr_linenumber" name="L248" href="#L248">248</a>         <strong class="jxr_keyword">boolean</strong> patchFileEnabled = patchFile != <strong class="jxr_keyword">null</strong>;
+<a class="jxr_linenumber" name="L249" href="#L249">249</a> 
+<a class="jxr_linenumber" name="L250" href="#L250">250</a>         <em class="jxr_comment">// if patches is null or empty, and naturalOrderProcessing is not true then disable patching</em>
+<a class="jxr_linenumber" name="L251" href="#L251">251</a>         <strong class="jxr_keyword">if</strong> ( !patchFileEnabled &amp;&amp; !patchDirEnabled )
+<a class="jxr_linenumber" name="L252" href="#L252">252</a>         {
+<a class="jxr_linenumber" name="L253" href="#L253">253</a>             getLog().info( <span class="jxr_string">"Patching is disabled for this project."</span> );
+<a class="jxr_linenumber" name="L254" href="#L254">254</a>             <strong class="jxr_keyword">return</strong>;
+<a class="jxr_linenumber" name="L255" href="#L255">255</a>         }
+<a class="jxr_linenumber" name="L256" href="#L256">256</a> 
+<a class="jxr_linenumber" name="L257" href="#L257">257</a>         <strong class="jxr_keyword">if</strong> ( skipApplication )
+<a class="jxr_linenumber" name="L258" href="#L258">258</a>         {
+<a class="jxr_linenumber" name="L259" href="#L259">259</a>             getLog().info( <span class="jxr_string">"Skipping patch file application (per configuration)."</span> );
+<a class="jxr_linenumber" name="L260" href="#L260">260</a>             <strong class="jxr_keyword">return</strong>;
+<a class="jxr_linenumber" name="L261" href="#L261">261</a>         }
+<a class="jxr_linenumber" name="L262" href="#L262">262</a> 
+<a class="jxr_linenumber" name="L263" href="#L263">263</a>         patchTrackingFile.getParentFile().mkdirs();
+<a class="jxr_linenumber" name="L264" href="#L264">264</a> 
+<a class="jxr_linenumber" name="L265" href="#L265">265</a>         Map patchesToApply;
+<a class="jxr_linenumber" name="L266" href="#L266">266</a> 
+<a class="jxr_linenumber" name="L267" href="#L267">267</a>         <strong class="jxr_keyword">try</strong>
+<a class="jxr_linenumber" name="L268" href="#L268">268</a>         {
+<a class="jxr_linenumber" name="L269" href="#L269">269</a>             <strong class="jxr_keyword">if</strong> ( patchFileEnabled )
+<a class="jxr_linenumber" name="L270" href="#L270">270</a>             {
+<a class="jxr_linenumber" name="L271" href="#L271">271</a>                 patchesToApply = Collections.singletonMap( patchFile.getName(), createPatchCommand( patchFile ) );
+<a class="jxr_linenumber" name="L272" href="#L272">272</a>             }
+<a class="jxr_linenumber" name="L273" href="#L273">273</a>             <strong class="jxr_keyword">else</strong>
+<a class="jxr_linenumber" name="L274" href="#L274">274</a>             {
+<a class="jxr_linenumber" name="L275" href="#L275">275</a>                 <strong class="jxr_keyword">if</strong> ( !patchDirectory.isDirectory() )
+<a class="jxr_linenumber" name="L276" href="#L276">276</a>                 {
+<a class="jxr_linenumber" name="L277" href="#L277">277</a>                     <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> FileNotFoundException( <span class="jxr_string">"The base directory for patch files does not exist: "</span>
+<a class="jxr_linenumber" name="L278" href="#L278">278</a>                         + patchDirectory );
+<a class="jxr_linenumber" name="L279" href="#L279">279</a>                 }
+<a class="jxr_linenumber" name="L280" href="#L280">280</a> 
+<a class="jxr_linenumber" name="L281" href="#L281">281</a>                 List foundPatchFiles = FileUtils.getFileNames( patchDirectory, <span class="jxr_string">"*"</span>, <strong class="jxr_keyword">null</strong>, false );
+<a class="jxr_linenumber" name="L282" href="#L282">282</a> 
+<a class="jxr_linenumber" name="L283" href="#L283">283</a>                 patchesToApply = findPatchesToApply( foundPatchFiles, patchDirectory );
+<a class="jxr_linenumber" name="L284" href="#L284">284</a> 
+<a class="jxr_linenumber" name="L285" href="#L285">285</a>                 checkStrictPatchCompliance( foundPatchFiles );
+<a class="jxr_linenumber" name="L286" href="#L286">286</a>             }
+<a class="jxr_linenumber" name="L287" href="#L287">287</a> 
+<a class="jxr_linenumber" name="L288" href="#L288">288</a>             String output = applyPatches( patchesToApply );
+<a class="jxr_linenumber" name="L289" href="#L289">289</a> 
+<a class="jxr_linenumber" name="L290" href="#L290">290</a>             checkForWatchPhrases( output );
+<a class="jxr_linenumber" name="L291" href="#L291">291</a> 
+<a class="jxr_linenumber" name="L292" href="#L292">292</a>             writeTrackingFile( patchesToApply );
+<a class="jxr_linenumber" name="L293" href="#L293">293</a>         }
+<a class="jxr_linenumber" name="L294" href="#L294">294</a>         <strong class="jxr_keyword">catch</strong> ( IOException ioe )
+<a class="jxr_linenumber" name="L295" href="#L295">295</a>         {
+<a class="jxr_linenumber" name="L296" href="#L296">296</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Unable to obtain list of patch files"</span>, ioe );
+<a class="jxr_linenumber" name="L297" href="#L297">297</a>         }
+<a class="jxr_linenumber" name="L298" href="#L298">298</a>     }
+<a class="jxr_linenumber" name="L299" href="#L299">299</a> 
+<a class="jxr_linenumber" name="L300" href="#L300">300</a>     <strong class="jxr_keyword">private</strong> Map findPatchesToApply( List foundPatchFiles, File patchSourceDir )
+<a class="jxr_linenumber" name="L301" href="#L301">301</a>         <strong class="jxr_keyword">throws</strong> MojoFailureException
+<a class="jxr_linenumber" name="L302" href="#L302">302</a>     {
+<a class="jxr_linenumber" name="L303" href="#L303">303</a>         Map patchesApplied = <strong class="jxr_keyword">new</strong> LinkedHashMap();
+<a class="jxr_linenumber" name="L304" href="#L304">304</a> 
+<a class="jxr_linenumber" name="L305" href="#L305">305</a>         <strong class="jxr_keyword">if</strong> ( naturalOrderProcessing )
+<a class="jxr_linenumber" name="L306" href="#L306">306</a>         {
+<a class="jxr_linenumber" name="L307" href="#L307">307</a>             patches = <strong class="jxr_keyword">new</strong> ArrayList( foundPatchFiles );
+<a class="jxr_linenumber" name="L308" href="#L308">308</a>             Collections.sort( patches );
+<a class="jxr_linenumber" name="L309" href="#L309">309</a>         }
+<a class="jxr_linenumber" name="L310" href="#L310">310</a> 
+<a class="jxr_linenumber" name="L311" href="#L311">311</a>         String alreadyAppliedPatches = <span class="jxr_string">""</span>;
+<a class="jxr_linenumber" name="L312" href="#L312">312</a> 
+<a class="jxr_linenumber" name="L313" href="#L313">313</a>         <strong class="jxr_keyword">try</strong>
+<a class="jxr_linenumber" name="L314" href="#L314">314</a>         {
+<a class="jxr_linenumber" name="L315" href="#L315">315</a>             <strong class="jxr_keyword">if</strong> ( optimizations &amp;&amp; patchTrackingFile.exists() )
+<a class="jxr_linenumber" name="L316" href="#L316">316</a>             {
+<a class="jxr_linenumber" name="L317" href="#L317">317</a>                 alreadyAppliedPatches = FileUtils.fileRead( patchTrackingFile );
+<a class="jxr_linenumber" name="L318" href="#L318">318</a>             }
+<a class="jxr_linenumber" name="L319" href="#L319">319</a>         }
+<a class="jxr_linenumber" name="L320" href="#L320">320</a>         <strong class="jxr_keyword">catch</strong> ( IOException ioe )
+<a class="jxr_linenumber" name="L321" href="#L321">321</a>         {
+<a class="jxr_linenumber" name="L322" href="#L322">322</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoFailureException( <span class="jxr_string">"unable to read patch tracking file: "</span> + ioe.getMessage() );
+<a class="jxr_linenumber" name="L323" href="#L323">323</a>         }
+<a class="jxr_linenumber" name="L324" href="#L324">324</a> 
+<a class="jxr_linenumber" name="L325" href="#L325">325</a>         <strong class="jxr_keyword">for</strong> ( Object patche : patches )
+<a class="jxr_linenumber" name="L326" href="#L326">326</a>         {
+<a class="jxr_linenumber" name="L327" href="#L327">327</a>             String patch = (String) patche;
+<a class="jxr_linenumber" name="L328" href="#L328">328</a> 
+<a class="jxr_linenumber" name="L329" href="#L329">329</a>             <strong class="jxr_keyword">if</strong> ( !alreadyAppliedPatches.contains( patch ) )
+<a class="jxr_linenumber" name="L330" href="#L330">330</a>             {
+<a class="jxr_linenumber" name="L331" href="#L331">331</a>                 File patchFile = <strong class="jxr_keyword">new</strong> File( patchSourceDir, patch );
+<a class="jxr_linenumber" name="L332" href="#L332">332</a> 
+<a class="jxr_linenumber" name="L333" href="#L333">333</a>                 getLog().debug( <span class="jxr_string">"Looking for patch: "</span> + patch + <span class="jxr_string">" in: "</span> + patchFile );
+<a class="jxr_linenumber" name="L334" href="#L334">334</a> 
+<a class="jxr_linenumber" name="L335" href="#L335">335</a>                 <strong class="jxr_keyword">if</strong> ( !patchFile.exists() )
+<a class="jxr_linenumber" name="L336" href="#L336">336</a>                 {
+<a class="jxr_linenumber" name="L337" href="#L337">337</a>                     <strong class="jxr_keyword">if</strong> ( strictPatching )
+<a class="jxr_linenumber" name="L338" href="#L338">338</a>                     {
+<a class="jxr_linenumber" name="L339" href="#L339">339</a>                         <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoFailureException( <strong class="jxr_keyword">this</strong>, <span class="jxr_string">"Patch operation cannot proceed."</span>,
+<a class="jxr_linenumber" name="L340" href="#L340">340</a>                                                         <span class="jxr_string">"Cannot find specified patch: \'"</span> + patch
+<a class="jxr_linenumber" name="L341" href="#L341">341</a>                                                             + <span class="jxr_string">"\' in patch-source directory: \'"</span> + patchSourceDir
+<a class="jxr_linenumber" name="L342" href="#L342">342</a>                                                             + <span class="jxr_string">"\'.\n\nEither fix this error, "</span>
+<a class="jxr_linenumber" name="L343" href="#L343">343</a>                                                             + <span class="jxr_string">"or relax strictPatching."</span> );
+<a class="jxr_linenumber" name="L344" href="#L344">344</a>                     }
+<a class="jxr_linenumber" name="L345" href="#L345">345</a>                     <strong class="jxr_keyword">else</strong>
+<a class="jxr_linenumber" name="L346" href="#L346">346</a>                     {
+<a class="jxr_linenumber" name="L347" href="#L347">347</a>                         getLog().info( <span class="jxr_string">"Skipping patch: "</span> + patch + <span class="jxr_string">" listed in the parameter \&quot;patches\&quot;; "</span>
+<a class="jxr_linenumber" name="L348" href="#L348">348</a>                                            + <span class="jxr_string">"it is missing."</span> );
+<a class="jxr_linenumber" name="L349" href="#L349">349</a>                     }
+<a class="jxr_linenumber" name="L350" href="#L350">350</a>                 }
+<a class="jxr_linenumber" name="L351" href="#L351">351</a>                 <strong class="jxr_keyword">else</strong>
+<a class="jxr_linenumber" name="L352" href="#L352">352</a>                 {
+<a class="jxr_linenumber" name="L353" href="#L353">353</a>                     foundPatchFiles.remove( patch );
+<a class="jxr_linenumber" name="L354" href="#L354">354</a> 
+<a class="jxr_linenumber" name="L355" href="#L355">355</a>                     patchesApplied.put( patch, createPatchCommand( patchFile ) );
+<a class="jxr_linenumber" name="L356" href="#L356">356</a>                 }
+<a class="jxr_linenumber" name="L357" href="#L357">357</a>             }
+<a class="jxr_linenumber" name="L358" href="#L358">358</a>         }
+<a class="jxr_linenumber" name="L359" href="#L359">359</a> 
+<a class="jxr_linenumber" name="L360" href="#L360">360</a>         <strong class="jxr_keyword">return</strong> patchesApplied;
+<a class="jxr_linenumber" name="L361" href="#L361">361</a>     }
+<a class="jxr_linenumber" name="L362" href="#L362">362</a> 
+<a class="jxr_linenumber" name="L363" href="#L363">363</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">void</strong> checkStrictPatchCompliance( List foundPatchFiles )
+<a class="jxr_linenumber" name="L364" href="#L364">364</a>         <strong class="jxr_keyword">throws</strong> MojoExecutionException
+<a class="jxr_linenumber" name="L365" href="#L365">365</a>     {
+<a class="jxr_linenumber" name="L366" href="#L366">366</a>         <strong class="jxr_keyword">if</strong> ( strictPatching )
+<a class="jxr_linenumber" name="L367" href="#L367">367</a>         {
+<a class="jxr_linenumber" name="L368" href="#L368">368</a>             List ignored = <strong class="jxr_keyword">new</strong> ArrayList();
+<a class="jxr_linenumber" name="L369" href="#L369">369</a> 
+<a class="jxr_linenumber" name="L370" href="#L370">370</a>             <strong class="jxr_keyword">if</strong> ( ignoredPatches != <strong class="jxr_keyword">null</strong> )
+<a class="jxr_linenumber" name="L371" href="#L371">371</a>             {
+<a class="jxr_linenumber" name="L372" href="#L372">372</a>                 ignored.addAll( ignoredPatches );
+<a class="jxr_linenumber" name="L373" href="#L373">373</a>             }
+<a class="jxr_linenumber" name="L374" href="#L374">374</a> 
+<a class="jxr_linenumber" name="L375" href="#L375">375</a>             <strong class="jxr_keyword">if</strong> ( useDefaultIgnores )
+<a class="jxr_linenumber" name="L376" href="#L376">376</a>             {
+<a class="jxr_linenumber" name="L377" href="#L377">377</a>                 ignored.addAll( DEFAULT_IGNORED_PATCHES );
+<a class="jxr_linenumber" name="L378" href="#L378">378</a>             }
+<a class="jxr_linenumber" name="L379" href="#L379">379</a> 
+<a class="jxr_linenumber" name="L380" href="#L380">380</a>             List limbo = <strong class="jxr_keyword">new</strong> ArrayList( foundPatchFiles );
+<a class="jxr_linenumber" name="L381" href="#L381">381</a> 
+<a class="jxr_linenumber" name="L382" href="#L382">382</a>             <strong class="jxr_keyword">for</strong> ( Object anIgnored : ignored )
+<a class="jxr_linenumber" name="L383" href="#L383">383</a>             {
+<a class="jxr_linenumber" name="L384" href="#L384">384</a>                 String ignoredFile = (String) anIgnored;
+<a class="jxr_linenumber" name="L385" href="#L385">385</a> 
+<a class="jxr_linenumber" name="L386" href="#L386">386</a>                 limbo.remove( ignoredFile );
+<a class="jxr_linenumber" name="L387" href="#L387">387</a>             }
+<a class="jxr_linenumber" name="L388" href="#L388">388</a> 
+<a class="jxr_linenumber" name="L389" href="#L389">389</a>             <strong class="jxr_keyword">if</strong> ( !limbo.isEmpty() )
+<a class="jxr_linenumber" name="L390" href="#L390">390</a>             {
+<a class="jxr_linenumber" name="L391" href="#L391">391</a>                 StringBuilder extraFileBuffer = <strong class="jxr_keyword">new</strong> StringBuilder();
+<a class="jxr_linenumber" name="L392" href="#L392">392</a> 
+<a class="jxr_linenumber" name="L393" href="#L393">393</a>                 extraFileBuffer.append( <span class="jxr_string">"Found "</span> ).append( limbo.size() ).append( <span class="jxr_string">" unlisted patch files:"</span> );
+<a class="jxr_linenumber" name="L394" href="#L394">394</a> 
+<a class="jxr_linenumber" name="L395" href="#L395">395</a>                 <strong class="jxr_keyword">for</strong> ( Object foundPatchFile : foundPatchFiles )
+<a class="jxr_linenumber" name="L396" href="#L396">396</a>                 {
+<a class="jxr_linenumber" name="L397" href="#L397">397</a>                     String patch = (String) foundPatchFile;
+<a class="jxr_linenumber" name="L398" href="#L398">398</a> 
+<a class="jxr_linenumber" name="L399" href="#L399">399</a>                     extraFileBuffer.append( <span class="jxr_string">"\n  \'"</span> ).append( patch ).append( '\'' );
+<a class="jxr_linenumber" name="L400" href="#L400">400</a>                 }
+<a class="jxr_linenumber" name="L401" href="#L401">401</a> 
+<a class="jxr_linenumber" name="L402" href="#L402">402</a>                 extraFileBuffer.append( <span class="jxr_string">"\n\nEither remove these files, "</span>
+<a class="jxr_linenumber" name="L403" href="#L403">403</a>                     + <span class="jxr_string">"add them to the patches configuration list, "</span> + <span class="jxr_string">"or relax strictPatching."</span> );
+<a class="jxr_linenumber" name="L404" href="#L404">404</a> 
+<a class="jxr_linenumber" name="L405" href="#L405">405</a>                 <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( extraFileBuffer.toString() );
+<a class="jxr_linenumber" name="L406" href="#L406">406</a>             }
+<a class="jxr_linenumber" name="L407" href="#L407">407</a>         }
+<a class="jxr_linenumber" name="L408" href="#L408">408</a>     }
+<a class="jxr_linenumber" name="L409" href="#L409">409</a> 
+<a class="jxr_linenumber" name="L410" href="#L410">410</a>     <strong class="jxr_keyword">private</strong> String applyPatches( Map patchesApplied )
+<a class="jxr_linenumber" name="L411" href="#L411">411</a>         <strong class="jxr_keyword">throws</strong> MojoExecutionException
+<a class="jxr_linenumber" name="L412" href="#L412">412</a>     {
+<a class="jxr_linenumber" name="L413" href="#L413">413</a>         <strong class="jxr_keyword">final</strong> StringWriter outputWriter = <strong class="jxr_keyword">new</strong> StringWriter();
+<a class="jxr_linenumber" name="L414" href="#L414">414</a> 
+<a class="jxr_linenumber" name="L415" href="#L415">415</a>         StreamConsumer consumer = <strong class="jxr_keyword">new</strong> StreamConsumer()
+<a class="jxr_linenumber" name="L416" href="#L416">416</a>         {
+<a class="jxr_linenumber" name="L417" href="#L417">417</a>             <strong class="jxr_keyword">public</strong> <strong class="jxr_keyword">void</strong> consumeLine( String line )
+<a class="jxr_linenumber" name="L418" href="#L418">418</a>             {
+<a class="jxr_linenumber" name="L419" href="#L419">419</a>                 <strong class="jxr_keyword">if</strong> ( getLog().isDebugEnabled() )
+<a class="jxr_linenumber" name="L420" href="#L420">420</a>                 {
+<a class="jxr_linenumber" name="L421" href="#L421">421</a>                     getLog().debug( line );
+<a class="jxr_linenumber" name="L422" href="#L422">422</a>                 }
+<a class="jxr_linenumber" name="L423" href="#L423">423</a> 
+<a class="jxr_linenumber" name="L424" href="#L424">424</a>                 outputWriter.write( line + <span class="jxr_string">"\n"</span> );
+<a class="jxr_linenumber" name="L425" href="#L425">425</a>             }
+<a class="jxr_linenumber" name="L426" href="#L426">426</a>         };
+<a class="jxr_linenumber" name="L427" href="#L427">427</a> 
+<a class="jxr_linenumber" name="L428" href="#L428">428</a>         <em class="jxr_comment">// used if failFast is false</em>
+<a class="jxr_linenumber" name="L429" href="#L429">429</a>         List failedPatches = <strong class="jxr_keyword">new</strong> ArrayList();
+<a class="jxr_linenumber" name="L430" href="#L430">430</a> 
+<a class="jxr_linenumber" name="L431" href="#L431">431</a>         <strong class="jxr_keyword">for</strong> ( Object o : patchesApplied.entrySet() )
+<a class="jxr_linenumber" name="L432" href="#L432">432</a>         {
+<a class="jxr_linenumber" name="L433" href="#L433">433</a>             Entry entry = (Entry) o;
+<a class="jxr_linenumber" name="L434" href="#L434">434</a>             String patchName = (String) entry.getKey();
+<a class="jxr_linenumber" name="L435" href="#L435">435</a>             Commandline cli = (Commandline) entry.getValue();
+<a class="jxr_linenumber" name="L436" href="#L436">436</a> 
+<a class="jxr_linenumber" name="L437" href="#L437">437</a>             <strong class="jxr_keyword">try</strong>
+<a class="jxr_linenumber" name="L438" href="#L438">438</a>             {
+<a class="jxr_linenumber" name="L439" href="#L439">439</a>                 getLog().info( <span class="jxr_string">"Applying patch: "</span> + patchName );
+<a class="jxr_linenumber" name="L440" href="#L440">440</a> 
+<a class="jxr_linenumber" name="L441" href="#L441">441</a>                 <strong class="jxr_keyword">int</strong> result = executeCommandLine( cli, consumer, consumer );
+<a class="jxr_linenumber" name="L442" href="#L442">442</a> 
+<a class="jxr_linenumber" name="L443" href="#L443">443</a>                 <strong class="jxr_keyword">if</strong> ( result != 0 )
+<a class="jxr_linenumber" name="L444" href="#L444">444</a>                 {
+<a class="jxr_linenumber" name="L445" href="#L445">445</a>                     <strong class="jxr_keyword">if</strong> ( failFast )
+<a class="jxr_linenumber" name="L446" href="#L446">446</a>                     {
+<a class="jxr_linenumber" name="L447" href="#L447">447</a>                         <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Patch command failed with exit code "</span> + result + <span class="jxr_string">" for "</span>
+<a class="jxr_linenumber" name="L448" href="#L448">448</a>                             + patchName + <span class="jxr_string">". Please see console and debug output for more information."</span> );
+<a class="jxr_linenumber" name="L449" href="#L449">449</a>                     }
+<a class="jxr_linenumber" name="L450" href="#L450">450</a>                     <strong class="jxr_keyword">else</strong>
+<a class="jxr_linenumber" name="L451" href="#L451">451</a>                     {
+<a class="jxr_linenumber" name="L452" href="#L452">452</a>                         failedPatches.add( patchName );
+<a class="jxr_linenumber" name="L453" href="#L453">453</a>                     }
+<a class="jxr_linenumber" name="L454" href="#L454">454</a>                 }
+<a class="jxr_linenumber" name="L455" href="#L455">455</a>             }
+<a class="jxr_linenumber" name="L456" href="#L456">456</a>             <strong class="jxr_keyword">catch</strong> ( CommandLineException e )
+<a class="jxr_linenumber" name="L457" href="#L457">457</a>             {
+<a class="jxr_linenumber" name="L458" href="#L458">458</a>                 <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Failed to apply patch: "</span> + patchName
+<a class="jxr_linenumber" name="L459" href="#L459">459</a>                     + <span class="jxr_string">". See debug output for more information."</span>, e );
+<a class="jxr_linenumber" name="L460" href="#L460">460</a>             }
+<a class="jxr_linenumber" name="L461" href="#L461">461</a>         }
+<a class="jxr_linenumber" name="L462" href="#L462">462</a> 
+<a class="jxr_linenumber" name="L463" href="#L463">463</a>         <strong class="jxr_keyword">if</strong> ( !failedPatches.isEmpty() )
+<a class="jxr_linenumber" name="L464" href="#L464">464</a>         {
+<a class="jxr_linenumber" name="L465" href="#L465">465</a>             getLog().error( <span class="jxr_string">"Failed applying one or more patches:"</span> );
+<a class="jxr_linenumber" name="L466" href="#L466">466</a>             <strong class="jxr_keyword">for</strong> ( Object failedPatche : failedPatches )
+<a class="jxr_linenumber" name="L467" href="#L467">467</a>             {
+<a class="jxr_linenumber" name="L468" href="#L468">468</a>                 getLog().error( <span class="jxr_string">"* "</span> + failedPatche );
+<a class="jxr_linenumber" name="L469" href="#L469">469</a>             }
+<a class="jxr_linenumber" name="L470" href="#L470">470</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Patch command failed for one or more patches."</span>
+<a class="jxr_linenumber" name="L471" href="#L471">471</a>                 + <span class="jxr_string">" Please see console and debug output for more information."</span> );
+<a class="jxr_linenumber" name="L472" href="#L472">472</a>         }
+<a class="jxr_linenumber" name="L473" href="#L473">473</a> 
+<a class="jxr_linenumber" name="L474" href="#L474">474</a>         <strong class="jxr_keyword">return</strong> outputWriter.toString();
+<a class="jxr_linenumber" name="L475" href="#L475">475</a>     }
+<a class="jxr_linenumber" name="L476" href="#L476">476</a> 
+<a class="jxr_linenumber" name="L477" href="#L477">477</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">int</strong> executeCommandLine( Commandline cli, StreamConsumer out, StreamConsumer err )
+<a class="jxr_linenumber" name="L478" href="#L478">478</a>         <strong class="jxr_keyword">throws</strong> CommandLineException
+<a class="jxr_linenumber" name="L479" href="#L479">479</a>     {
+<a class="jxr_linenumber" name="L480" href="#L480">480</a>         <strong class="jxr_keyword">if</strong> ( getLog().isDebugEnabled() )
+<a class="jxr_linenumber" name="L481" href="#L481">481</a>         {
+<a class="jxr_linenumber" name="L482" href="#L482">482</a>             getLog().debug( <span class="jxr_string">"Executing: "</span> + cli );
+<a class="jxr_linenumber" name="L483" href="#L483">483</a>         }
+<a class="jxr_linenumber" name="L484" href="#L484">484</a> 
+<a class="jxr_linenumber" name="L485" href="#L485">485</a>         <strong class="jxr_keyword">int</strong> result = CommandLineUtils.executeCommandLine( cli, out, err );
+<a class="jxr_linenumber" name="L486" href="#L486">486</a> 
+<a class="jxr_linenumber" name="L487" href="#L487">487</a>         <strong class="jxr_keyword">if</strong> ( getLog().isDebugEnabled() )
+<a class="jxr_linenumber" name="L488" href="#L488">488</a>         {
+<a class="jxr_linenumber" name="L489" href="#L489">489</a>             getLog().debug( <span class="jxr_string">"Exit code: "</span> + result );
+<a class="jxr_linenumber" name="L490" href="#L490">490</a>         }
+<a class="jxr_linenumber" name="L491" href="#L491">491</a> 
+<a class="jxr_linenumber" name="L492" href="#L492">492</a>         <strong class="jxr_keyword">return</strong> result;
+<a class="jxr_linenumber" name="L493" href="#L493">493</a>     }
+<a class="jxr_linenumber" name="L494" href="#L494">494</a> 
+<a class="jxr_linenumber" name="L495" href="#L495">495</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">void</strong> writeTrackingFile( Map patchesApplied )
+<a class="jxr_linenumber" name="L496" href="#L496">496</a>         <strong class="jxr_keyword">throws</strong> MojoExecutionException
+<a class="jxr_linenumber" name="L497" href="#L497">497</a>     {
+<a class="jxr_linenumber" name="L498" href="#L498">498</a>         FileWriter writer = <strong class="jxr_keyword">null</strong>;
+<a class="jxr_linenumber" name="L499" href="#L499">499</a>         <strong class="jxr_keyword">try</strong>
+<a class="jxr_linenumber" name="L500" href="#L500">500</a>         {
+<a class="jxr_linenumber" name="L501" href="#L501">501</a>             <strong class="jxr_keyword">boolean</strong> appending = patchTrackingFile.exists();
+<a class="jxr_linenumber" name="L502" href="#L502">502</a> 
+<a class="jxr_linenumber" name="L503" href="#L503">503</a>             writer = <strong class="jxr_keyword">new</strong> FileWriter( patchTrackingFile, appending );
+<a class="jxr_linenumber" name="L504" href="#L504">504</a> 
+<a class="jxr_linenumber" name="L505" href="#L505">505</a>             <strong class="jxr_keyword">for</strong> ( Iterator it = patchesApplied.keySet().iterator(); it.hasNext(); )
+<a class="jxr_linenumber" name="L506" href="#L506">506</a>             {
+<a class="jxr_linenumber" name="L507" href="#L507">507</a>                 <strong class="jxr_keyword">if</strong> ( appending )
+<a class="jxr_linenumber" name="L508" href="#L508">508</a>                 {
+<a class="jxr_linenumber" name="L509" href="#L509">509</a>                     writer.write( System.getProperty( <span class="jxr_string">"line.separator"</span> ) );
+<a class="jxr_linenumber" name="L510" href="#L510">510</a>                 }
+<a class="jxr_linenumber" name="L511" href="#L511">511</a> 
+<a class="jxr_linenumber" name="L512" href="#L512">512</a>                 String patch = (String) it.next();
+<a class="jxr_linenumber" name="L513" href="#L513">513</a>                 writer.write( patch );
+<a class="jxr_linenumber" name="L514" href="#L514">514</a> 
+<a class="jxr_linenumber" name="L515" href="#L515">515</a>                 <strong class="jxr_keyword">if</strong> ( it.hasNext() )
+<a class="jxr_linenumber" name="L516" href="#L516">516</a>                 {
+<a class="jxr_linenumber" name="L517" href="#L517">517</a>                     writer.write( System.getProperty( <span class="jxr_string">"line.separator"</span> ) );
+<a class="jxr_linenumber" name="L518" href="#L518">518</a>                 }
+<a class="jxr_linenumber" name="L519" href="#L519">519</a>             }
+<a class="jxr_linenumber" name="L520" href="#L520">520</a> 
+<a class="jxr_linenumber" name="L521" href="#L521">521</a>             writer.flush();
+<a class="jxr_linenumber" name="L522" href="#L522">522</a>         }
+<a class="jxr_linenumber" name="L523" href="#L523">523</a>         <strong class="jxr_keyword">catch</strong> ( IOException e )
+<a class="jxr_linenumber" name="L524" href="#L524">524</a>         {
+<a class="jxr_linenumber" name="L525" href="#L525">525</a>             <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Failed to write patch-tracking file: "</span> + patchTrackingFile, e );
+<a class="jxr_linenumber" name="L526" href="#L526">526</a>         }
+<a class="jxr_linenumber" name="L527" href="#L527">527</a>         <strong class="jxr_keyword">finally</strong>
+<a class="jxr_linenumber" name="L528" href="#L528">528</a>         {
+<a class="jxr_linenumber" name="L529" href="#L529">529</a>             IOUtil.close( writer );
+<a class="jxr_linenumber" name="L530" href="#L530">530</a>         }
+<a class="jxr_linenumber" name="L531" href="#L531">531</a>     }
+<a class="jxr_linenumber" name="L532" href="#L532">532</a> 
+<a class="jxr_linenumber" name="L533" href="#L533">533</a>     <strong class="jxr_keyword">private</strong> <strong class="jxr_keyword">void</strong> checkForWatchPhrases( String output )
+<a class="jxr_linenumber" name="L534" href="#L534">534</a>         <strong class="jxr_keyword">throws</strong> MojoExecutionException
+<a class="jxr_linenumber" name="L535" href="#L535">535</a>     {
+<a class="jxr_linenumber" name="L536" href="#L536">536</a>         <strong class="jxr_keyword">for</strong> ( Object failurePhrase : failurePhrases )
+<a class="jxr_linenumber" name="L537" href="#L537">537</a>         {
+<a class="jxr_linenumber" name="L538" href="#L538">538</a>             String phrase = (String) failurePhrase;
+<a class="jxr_linenumber" name="L539" href="#L539">539</a> 
+<a class="jxr_linenumber" name="L540" href="#L540">540</a>             <strong class="jxr_keyword">if</strong> ( output.contains( phrase ) )
+<a class="jxr_linenumber" name="L541" href="#L541">541</a>             {
+<a class="jxr_linenumber" name="L542" href="#L542">542</a>                 <strong class="jxr_keyword">throw</strong> <strong class="jxr_keyword">new</strong> MojoExecutionException( <span class="jxr_string">"Failed to apply patches (detected watch-phrase: \'"</span> + phrase
+<a class="jxr_linenumber" name="L543" href="#L543">543</a>                     + <span class="jxr_string">"\' in output). "</span> + <span class="jxr_string">"If this is in error, configure the patchFailureWatchPhrases parameter."</span> );
+<a class="jxr_linenumber" name="L544" href="#L544">544</a>             }
+<a class="jxr_linenumber" name="L545" href="#L545">545</a>         }
+<a class="jxr_linenumber" name="L546" href="#L546">546</a>     }
+<a class="jxr_linenumber" name="L547" href="#L547">547</a> 
+<a class="jxr_linenumber" name="L548" href="#L548">548</a>     <em class="jxr_javadoccomment">/**</em>
+<a class="jxr_linenumber" name="L549" href="#L549">549</a> <em class="jxr_javadoccomment">     * Add a new Patch task to the Ant calling mechanism. Give preference to originalFile/destFile, then workDir, and</em>
+<a class="jxr_linenumber" name="L550" href="#L550">550</a> <em class="jxr_javadoccomment">     * finally ${basedir}.</em>
+<a class="jxr_linenumber" name="L551" href="#L551">551</a> <em class="jxr_javadoccomment">     */</em>
+<a class="jxr_linenumber" name="L552" href="#L552">552</a>     <strong class="jxr_keyword">private</strong> Commandline createPatchCommand( File patchFile )
+<a class="jxr_linenumber" name="L553" href="#L553">553</a>     {
+<a class="jxr_linenumber" name="L554" href="#L554">554</a>         Commandline cli = <strong class="jxr_keyword">new</strong> Commandline();
+<a class="jxr_linenumber" name="L555" href="#L555">555</a> 
+<a class="jxr_linenumber" name="L556" href="#L556">556</a>         cli.setExecutable( <span class="jxr_string">"patch"</span> );
+<a class="jxr_linenumber" name="L557" href="#L557">557</a> 
+<a class="jxr_linenumber" name="L558" href="#L558">558</a>         cli.setWorkingDirectory( targetDirectory.getAbsolutePath() );
+<a class="jxr_linenumber" name="L559" href="#L559">559</a> 
+<a class="jxr_linenumber" name="L560" href="#L560">560</a>         cli.createArg().setValue( <span class="jxr_string">"-p"</span> + strip );
+<a class="jxr_linenumber" name="L561" href="#L561">561</a> 
+<a class="jxr_linenumber" name="L562" href="#L562">562</a>         <strong class="jxr_keyword">if</strong> ( binary )
+<a class="jxr_linenumber" name="L563" href="#L563">563</a>         {
+<a class="jxr_linenumber" name="L564" href="#L564">564</a>             cli.createArg().setValue( <span class="jxr_string">"--binary"</span> );
+<a class="jxr_linenumber" name="L565" href="#L565">565</a>         }
+<a class="jxr_linenumber" name="L566" href="#L566">566</a> 
+<a class="jxr_linenumber" name="L567" href="#L567">567</a>         <strong class="jxr_keyword">if</strong> ( ignoreWhitespace )
+<a class="jxr_linenumber" name="L568" href="#L568">568</a>         {
+<a class="jxr_linenumber" name="L569" href="#L569">569</a>             cli.createArg().setValue( <span class="jxr_string">"-l"</span> );
+<a class="jxr_linenumber" name="L570" href="#L570">570</a>         }
+<a class="jxr_linenumber" name="L571" href="#L571">571</a> 
+<a class="jxr_linenumber" name="L572" href="#L572">572</a>         <strong class="jxr_keyword">if</strong> ( reverse )
+<a class="jxr_linenumber" name="L573" href="#L573">573</a>         {
+<a class="jxr_linenumber" name="L574" href="#L574">574</a>             cli.createArg().setValue( <span class="jxr_string">"-R"</span> );
+<a class="jxr_linenumber" name="L575" href="#L575">575</a>         }
+<a class="jxr_linenumber" name="L576" href="#L576">576</a> 
+<a class="jxr_linenumber" name="L577" href="#L577">577</a>         <strong class="jxr_keyword">if</strong> ( backups )
+<a class="jxr_linenumber" name="L578" href="#L578">578</a>         {
+<a class="jxr_linenumber" name="L579" href="#L579">579</a>             cli.createArg().setValue( <span class="jxr_string">"-b"</span> );
+<a class="jxr_linenumber" name="L580" href="#L580">580</a>         }
+<a class="jxr_linenumber" name="L581" href="#L581">581</a> 
+<a class="jxr_linenumber" name="L582" href="#L582">582</a>         <strong class="jxr_keyword">if</strong> ( removeEmptyFiles )
+<a class="jxr_linenumber" name="L583" href="#L583">583</a>         {
+<a class="jxr_linenumber" name="L584" href="#L584">584</a>             cli.createArg().setValue( <span class="jxr_string">"-E"</span> );
+<a class="jxr_linenumber" name="L585" href="#L585">585</a>         }
+<a class="jxr_linenumber" name="L586" href="#L586">586</a> 
+<a class="jxr_linenumber" name="L587" href="#L587">587</a>         cli.createArg().setValue( <span class="jxr_string">"-i"</span> );
+<a class="jxr_linenumber" name="L588" href="#L588">588</a>         cli.createArg().setFile( patchFile );
+<a class="jxr_linenumber" name="L589" href="#L589">589</a> 
+<a class="jxr_linenumber" name="L590" href="#L590">590</a>         <strong class="jxr_keyword">if</strong> ( destFile != <strong class="jxr_keyword">null</strong> )
+<a class="jxr_linenumber" name="L591" href="#L591">591</a>         {
+<a class="jxr_linenumber" name="L592" href="#L592">592</a>             cli.createArg().setValue( <span class="jxr_string">"-o"</span> );
+<a class="jxr_linenumber" name="L593" href="#L593">593</a>             cli.createArg().setFile( destFile );
+<a class="jxr_linenumber" name="L594" href="#L594">594</a>         }
+<a class="jxr_linenumber" name="L595" href="#L595">595</a> 
+<a class="jxr_linenumber" name="L596" href="#L596">596</a>         <strong class="jxr_keyword">if</strong> ( originalFile != <strong class="jxr_keyword">null</strong> )
+<a class="jxr_linenumber" name="L597" href="#L597">597</a>         {
+<a class="jxr_linenumber" name="L598" href="#L598">598</a>             cli.createArg().setFile( originalFile );
+<a class="jxr_linenumber" name="L599" href="#L599">599</a>         }
+<a class="jxr_linenumber" name="L600" href="#L600">600</a> 
+<a class="jxr_linenumber" name="L601" href="#L601">601</a>         <strong class="jxr_keyword">return</strong> cli;
+<a class="jxr_linenumber" name="L602" href="#L602">602</a>     }
+<a class="jxr_linenumber" name="L603" href="#L603">603</a> 
+<a class="jxr_linenumber" name="L604" href="#L604">604</a> }
+</pre>
+<hr/>
+<div id="footer">Copyright &#169; 2002&#x2013;2015 <a href="http://www.apache.org/">The Apache Software Foundation</a>. All rights reserved.</div>
+</body>
+</html>
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