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Posted to user@ctakes.apache.org by Kim Ebert <ki...@perfectsearchcorp.com> on 2014/11/12 00:05:12 UTC
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Adding developer mailing list, as I'm not sure what is causing your error.
Kim Ebert
1.801.669.7342
Perfect Search Corp
http://www.perfectsearchcorp.com/
On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
> Hi,
> I'm trying to install ytex. I've followed the instructions provided
> here
> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
> but the installing process stops and raises an Excpetion
> java.lang.ExceptionInInitializerError.
> More precisely I receive that output: http://pastebin.com/PrWyBxhx .
> I'm using cTakes 3.2 and the I've installed locally on a mysql db the
> umls 2014AA version.
>
> Best regards,
>
> Giovanni
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by vijay garla <vn...@gmail.com>.
Once a concept graph is loaded, calculating the similarity is pretty quick.
the larger the concept graph, the longer it takes to load, and the more
memory is required.
-vj
On Wed, Nov 26, 2014 at 10:07 AM, Giovanni Di Santo <giovi.disanto@gmail.com
> wrote:
> I'm using the console version. I suppose the more you add concepts and
> relation inside the graph the more time the process needs to calculate the
> similarity. Am I right?
>
> Thanks,
>
> Giovanni
>
> 2014-11-25 12:48 GMT+01:00 vijay garla <vn...@gmail.com>:
>
>> You will get a similarity of 0 if one of the concepts isn't in the
>> concept graph. Did you test this via the web app / rest service / command
>> line?
>>
>> YTEX ships with the umls concept graph (all level 0 source vocabs +
>> snomed ct) and the sct-rxnorm concept graph (snomed-ct + rxnorm)
>>
>> When I run the concept similarity service from the command line, I get
>> these results for umls concept graph:
>> Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus
>> lcs intrinsic lcs paths
>> C0042776 C0001175 0.682817 0.261689
>> C1140093|C0000000 C1140093
>> C1140093=C0042776->C0029235->*C1140093*<-C0001175<-C0039082<-C0012634|C0000000=C0042776->C0995203->*C0000000*<-C0001175<-C0039082<-C0679227
>>
>> When I run with the sct-umls concept graph:
>> Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus
>> lcs intrinsic lcs paths
>> C0042776 C0001175 0.535563 0.267890 C0000000
>> C0000000
>> C0000000=C0042776->C0445623->C0029235->C2720507->*C0000000*<-C0001175<-C0729529<-C0153114
>>
>> Here is my command:
>> java -cp %CLASSPATH%
>> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
>> -Dytex.conceptGraphName=umls
>> org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
>> C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
>> or
>> java -cp %CLASSPATH%
>> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
>> -Dytex.conceptGraphName=sct-umls
>> org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
>> C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
>>
>> If you add the -lcs option you will get all the paths.
>>
>> I think the high similarity you expect may not be modeled in the graph -
>> *AIDS* is a disease, *HIV* is-a *Virus* (that *causes AIDS*). I'm not
>> sure if you can view *causes *as a hierarchical relationship. If you
>> want to, you can create a concept graph that includes additional
>> relationships (you would have to check to see if this relationship is
>> modeled in the UMLS).
>>
>> HTH,
>>
>> VJ
>>
>>
>>
>> On Mon, Nov 24, 2014 at 7:55 PM, Giovanni Di Santo <
>> giovi.disanto@gmail.com> wrote:
>>
>>> The installation procedure is over now and it seems it went well. If you
>>> need I can provide the installation logs.
>>> I have some questions about the semantic similarity feature. I have
>>> tried the example provided in the guide and It worked. I tried with other
>>> cui for example virus(C0042776) and aids(C0001175) and it gave me a
>>> similarity of 0.0... that sounded strange.
>>> I thought maybe because I was using a small part of umls so I tried with
>>> the option "-Dytex.conceptGraphName=umls" but I got the same result.
>>> Do I have to build my own concept graph and corups information content
>>> as described in the guide? if yes how can I do that for the whole umls
>>> database? Do you think the final graph would be too big?
>>>
>>> Best regards,
>>>
>>> Giovanni
>>>
>>> 2014-11-24 16:49 GMT+01:00 Giovanni Di Santo <gi...@gmail.com>:
>>>
>>>> Hi Vijay,
>>>> Thanks for your reply.
>>>> I added that file as you suggested. The installation process has passed
>>>> that point and now... I suppose... It's filling the database. I have been
>>>> running it for 2 hours so far... I suppose it's taking a lot of time cause
>>>> it's creating a dictionary lookup table for my local umls installation.
>>>> I'll let you know when the installation is over.
>>>>
>>>> Best regards
>>>>
>>>> Giovanni
>>>>
>>>> 2014-11-24 13:45 GMT+01:00 vijay garla <vn...@gmail.com>:
>>>>
>>>>> Hi Giovanni,
>>>>>
>>>>> I think I found a bug in the offending class. Can you copy the
>>>>> attached file to this directory:
>>>>>
>>>>> YTEX_HOME\resources\org\apache\ctakes\ytex\
>>>>>
>>>>> And retry?
>>>>>
>>>>> Thanks!
>>>>>
>>>>> VJ
>>>>>
>>>>>
>>>>> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <
>>>>> giovi.disanto@gmail.com> wrote:
>>>>>
>>>>>> Hi,
>>>>>> I have tried to install YTEX in another machine and the same
>>>>>> exception is thrown during the installation. The output is slightly
>>>>>> different: http://pastebin.com/gVhSFYKp.
>>>>>> I suppose I make some mistakes during the installation process.
>>>>>> When in the ytes installation guide is written to copy "over" my
>>>>>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
>>>>>> Is there any already ready ytex version that I can download and use
>>>>>> for Linux?
>>>>>>
>>>>>> I don't really now what could be the problem and I need to test the
>>>>>> Semantic Similarity feature.
>>>>>>
>>>>>> Best regards
>>>>>>
>>>>>> Giovanni
>>>>>>
>>>>>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>
>>>>>> :
>>>>>>
>>>>>>> Adding developer mailing list, as I'm not sure what is causing your
>>>>>>> error.
>>>>>>>
>>>>>>> Kim Ebert
>>>>>>> 1.801.669.7342
>>>>>>> Perfect Search Corp
>>>>>>> http://www.perfectsearchcorp.com/
>>>>>>>
>>>>>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>>>>>>> > Hi,
>>>>>>> > I'm trying to install ytex. I've followed the instructions provided
>>>>>>> > here
>>>>>>> >
>>>>>>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>>>>>>> > but the installing process stops and raises an Excpetion
>>>>>>> > java.lang.ExceptionInInitializerError.
>>>>>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx
>>>>>>> .
>>>>>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db
>>>>>>> the
>>>>>>> > umls 2014AA version.
>>>>>>> >
>>>>>>> > Best regards,
>>>>>>> >
>>>>>>> > Giovanni
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by Giovanni Di Santo <gi...@gmail.com>.
I'm using the console version. I suppose the more you add concepts and
relation inside the graph the more time the process needs to calculate the
similarity. Am I right?
Thanks,
Giovanni
2014-11-25 12:48 GMT+01:00 vijay garla <vn...@gmail.com>:
> You will get a similarity of 0 if one of the concepts isn't in the concept
> graph. Did you test this via the web app / rest service / command line?
>
> YTEX ships with the umls concept graph (all level 0 source vocabs + snomed
> ct) and the sct-rxnorm concept graph (snomed-ct + rxnorm)
>
> When I run the concept similarity service from the command line, I get
> these results for umls concept graph:
> Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus lcs
> intrinsic lcs paths
> C0042776 C0001175 0.682817 0.261689
> C1140093|C0000000 C1140093
> C1140093=C0042776->C0029235->*C1140093*<-C0001175<-C0039082<-C0012634|C0000000=C0042776->C0995203->*C0000000*<-C0001175<-C0039082<-C0679227
>
> When I run with the sct-umls concept graph:
> Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus lcs
> intrinsic lcs paths
> C0042776 C0001175 0.535563 0.267890 C0000000
> C0000000
> C0000000=C0042776->C0445623->C0029235->C2720507->*C0000000*<-C0001175<-C0729529<-C0153114
>
> Here is my command:
> java -cp %CLASSPATH%
> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
> -Dytex.conceptGraphName=umls
> org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
> C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
> or
> java -cp %CLASSPATH%
> -Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
> -Dytex.conceptGraphName=sct-umls
> org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
> C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
>
> If you add the -lcs option you will get all the paths.
>
> I think the high similarity you expect may not be modeled in the graph -
> *AIDS* is a disease, *HIV* is-a *Virus* (that *causes AIDS*). I'm not
> sure if you can view *causes *as a hierarchical relationship. If you
> want to, you can create a concept graph that includes additional
> relationships (you would have to check to see if this relationship is
> modeled in the UMLS).
>
> HTH,
>
> VJ
>
>
>
> On Mon, Nov 24, 2014 at 7:55 PM, Giovanni Di Santo <
> giovi.disanto@gmail.com> wrote:
>
>> The installation procedure is over now and it seems it went well. If you
>> need I can provide the installation logs.
>> I have some questions about the semantic similarity feature. I have tried
>> the example provided in the guide and It worked. I tried with other cui for
>> example virus(C0042776) and aids(C0001175) and it gave me a similarity of
>> 0.0... that sounded strange.
>> I thought maybe because I was using a small part of umls so I tried with
>> the option "-Dytex.conceptGraphName=umls" but I got the same result.
>> Do I have to build my own concept graph and corups information content as
>> described in the guide? if yes how can I do that for the whole umls
>> database? Do you think the final graph would be too big?
>>
>> Best regards,
>>
>> Giovanni
>>
>> 2014-11-24 16:49 GMT+01:00 Giovanni Di Santo <gi...@gmail.com>:
>>
>>> Hi Vijay,
>>> Thanks for your reply.
>>> I added that file as you suggested. The installation process has passed
>>> that point and now... I suppose... It's filling the database. I have been
>>> running it for 2 hours so far... I suppose it's taking a lot of time cause
>>> it's creating a dictionary lookup table for my local umls installation.
>>> I'll let you know when the installation is over.
>>>
>>> Best regards
>>>
>>> Giovanni
>>>
>>> 2014-11-24 13:45 GMT+01:00 vijay garla <vn...@gmail.com>:
>>>
>>>> Hi Giovanni,
>>>>
>>>> I think I found a bug in the offending class. Can you copy the
>>>> attached file to this directory:
>>>>
>>>> YTEX_HOME\resources\org\apache\ctakes\ytex\
>>>>
>>>> And retry?
>>>>
>>>> Thanks!
>>>>
>>>> VJ
>>>>
>>>>
>>>> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <
>>>> giovi.disanto@gmail.com> wrote:
>>>>
>>>>> Hi,
>>>>> I have tried to install YTEX in another machine and the same exception
>>>>> is thrown during the installation. The output is slightly different:
>>>>> http://pastebin.com/gVhSFYKp.
>>>>> I suppose I make some mistakes during the installation process.
>>>>> When in the ytes installation guide is written to copy "over" my
>>>>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
>>>>> Is there any already ready ytex version that I can download and use
>>>>> for Linux?
>>>>>
>>>>> I don't really now what could be the problem and I need to test the
>>>>> Semantic Similarity feature.
>>>>>
>>>>> Best regards
>>>>>
>>>>> Giovanni
>>>>>
>>>>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
>>>>>
>>>>>> Adding developer mailing list, as I'm not sure what is causing your
>>>>>> error.
>>>>>>
>>>>>> Kim Ebert
>>>>>> 1.801.669.7342
>>>>>> Perfect Search Corp
>>>>>> http://www.perfectsearchcorp.com/
>>>>>>
>>>>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>>>>>> > Hi,
>>>>>> > I'm trying to install ytex. I've followed the instructions provided
>>>>>> > here
>>>>>> >
>>>>>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>>>>>> > but the installing process stops and raises an Excpetion
>>>>>> > java.lang.ExceptionInInitializerError.
>>>>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx
>>>>>> .
>>>>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db
>>>>>> the
>>>>>> > umls 2014AA version.
>>>>>> >
>>>>>> > Best regards,
>>>>>> >
>>>>>> > Giovanni
>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by vijay garla <vn...@gmail.com>.
You will get a similarity of 0 if one of the concepts isn't in the concept
graph. Did you test this via the web app / rest service / command line?
YTEX ships with the umls concept graph (all level 0 source vocabs + snomed
ct) and the sct-rxnorm concept graph (snomed-ct + rxnorm)
When I run the concept similarity service from the command line, I get
these results for umls concept graph:
Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus lcs
intrinsic lcs paths
C0042776 C0001175 0.682817 0.261689
C1140093|C0000000 C1140093
C1140093=C0042776->C0029235->*C1140093*<-C0001175<-C0039082<-C0012634|C0000000=C0042776->C0995203->*C0000000*<-C0001175<-C0039082<-C0679227
When I run with the sct-umls concept graph:
Concept 1 Concept 2 LCH INTRINSIC_LCH lcs(s) corpus lcs
intrinsic lcs paths
C0042776 C0001175 0.535563 0.267890 C0000000
C0000000
C0000000=C0042776->C0445623->C0029235->C2720507->*C0000000*<-C0001175<-C0729529<-C0153114
Here is my command:
java -cp %CLASSPATH%
-Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
-Dytex.conceptGraphName=umls
org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
or
java -cp %CLASSPATH%
-Dlog4j.configuration=file:/%CTAKES_HOME%/config/log4j.xml -Xmx2g
-Dytex.conceptGraphName=sct-umls
org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl -concepts
C0042776,C0001175 -lcs -metrics LCH,INTRINSIC_LCH
If you add the -lcs option you will get all the paths.
I think the high similarity you expect may not be modeled in the graph -
*AIDS* is a disease, *HIV* is-a *Virus* (that *causes AIDS*). I'm not sure
if you can view *causes *as a hierarchical relationship. If you want to,
you can create a concept graph that includes additional relationships (you
would have to check to see if this relationship is modeled in the UMLS).
HTH,
VJ
On Mon, Nov 24, 2014 at 7:55 PM, Giovanni Di Santo <gi...@gmail.com>
wrote:
> The installation procedure is over now and it seems it went well. If you
> need I can provide the installation logs.
> I have some questions about the semantic similarity feature. I have tried
> the example provided in the guide and It worked. I tried with other cui for
> example virus(C0042776) and aids(C0001175) and it gave me a similarity of
> 0.0... that sounded strange.
> I thought maybe because I was using a small part of umls so I tried with
> the option "-Dytex.conceptGraphName=umls" but I got the same result.
> Do I have to build my own concept graph and corups information content as
> described in the guide? if yes how can I do that for the whole umls
> database? Do you think the final graph would be too big?
>
> Best regards,
>
> Giovanni
>
> 2014-11-24 16:49 GMT+01:00 Giovanni Di Santo <gi...@gmail.com>:
>
>> Hi Vijay,
>> Thanks for your reply.
>> I added that file as you suggested. The installation process has passed
>> that point and now... I suppose... It's filling the database. I have been
>> running it for 2 hours so far... I suppose it's taking a lot of time cause
>> it's creating a dictionary lookup table for my local umls installation.
>> I'll let you know when the installation is over.
>>
>> Best regards
>>
>> Giovanni
>>
>> 2014-11-24 13:45 GMT+01:00 vijay garla <vn...@gmail.com>:
>>
>>> Hi Giovanni,
>>>
>>> I think I found a bug in the offending class. Can you copy the attached
>>> file to this directory:
>>>
>>> YTEX_HOME\resources\org\apache\ctakes\ytex\
>>>
>>> And retry?
>>>
>>> Thanks!
>>>
>>> VJ
>>>
>>>
>>> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <
>>> giovi.disanto@gmail.com> wrote:
>>>
>>>> Hi,
>>>> I have tried to install YTEX in another machine and the same exception
>>>> is thrown during the installation. The output is slightly different:
>>>> http://pastebin.com/gVhSFYKp.
>>>> I suppose I make some mistakes during the installation process.
>>>> When in the ytes installation guide is written to copy "over" my
>>>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
>>>> Is there any already ready ytex version that I can download and use for
>>>> Linux?
>>>>
>>>> I don't really now what could be the problem and I need to test the
>>>> Semantic Similarity feature.
>>>>
>>>> Best regards
>>>>
>>>> Giovanni
>>>>
>>>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
>>>>
>>>>> Adding developer mailing list, as I'm not sure what is causing your
>>>>> error.
>>>>>
>>>>> Kim Ebert
>>>>> 1.801.669.7342
>>>>> Perfect Search Corp
>>>>> http://www.perfectsearchcorp.com/
>>>>>
>>>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>>>>> > Hi,
>>>>> > I'm trying to install ytex. I've followed the instructions provided
>>>>> > here
>>>>> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>>>>> > but the installing process stops and raises an Excpetion
>>>>> > java.lang.ExceptionInInitializerError.
>>>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
>>>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
>>>>> > umls 2014AA version.
>>>>> >
>>>>> > Best regards,
>>>>> >
>>>>> > Giovanni
>>>>>
>>>>>
>>>>
>>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by Giovanni Di Santo <gi...@gmail.com>.
The installation procedure is over now and it seems it went well. If you
need I can provide the installation logs.
I have some questions about the semantic similarity feature. I have tried
the example provided in the guide and It worked. I tried with other cui for
example virus(C0042776) and aids(C0001175) and it gave me a similarity of
0.0... that sounded strange.
I thought maybe because I was using a small part of umls so I tried with
the option "-Dytex.conceptGraphName=umls" but I got the same result.
Do I have to build my own concept graph and corups information content as
described in the guide? if yes how can I do that for the whole umls
database? Do you think the final graph would be too big?
Best regards,
Giovanni
2014-11-24 16:49 GMT+01:00 Giovanni Di Santo <gi...@gmail.com>:
> Hi Vijay,
> Thanks for your reply.
> I added that file as you suggested. The installation process has passed
> that point and now... I suppose... It's filling the database. I have been
> running it for 2 hours so far... I suppose it's taking a lot of time cause
> it's creating a dictionary lookup table for my local umls installation.
> I'll let you know when the installation is over.
>
> Best regards
>
> Giovanni
>
> 2014-11-24 13:45 GMT+01:00 vijay garla <vn...@gmail.com>:
>
>> Hi Giovanni,
>>
>> I think I found a bug in the offending class. Can you copy the attached
>> file to this directory:
>>
>> YTEX_HOME\resources\org\apache\ctakes\ytex\
>>
>> And retry?
>>
>> Thanks!
>>
>> VJ
>>
>>
>> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <
>> giovi.disanto@gmail.com> wrote:
>>
>>> Hi,
>>> I have tried to install YTEX in another machine and the same exception
>>> is thrown during the installation. The output is slightly different:
>>> http://pastebin.com/gVhSFYKp.
>>> I suppose I make some mistakes during the installation process.
>>> When in the ytes installation guide is written to copy "over" my
>>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
>>> Is there any already ready ytex version that I can download and use for
>>> Linux?
>>>
>>> I don't really now what could be the problem and I need to test the
>>> Semantic Similarity feature.
>>>
>>> Best regards
>>>
>>> Giovanni
>>>
>>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
>>>
>>>> Adding developer mailing list, as I'm not sure what is causing your
>>>> error.
>>>>
>>>> Kim Ebert
>>>> 1.801.669.7342
>>>> Perfect Search Corp
>>>> http://www.perfectsearchcorp.com/
>>>>
>>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>>>> > Hi,
>>>> > I'm trying to install ytex. I've followed the instructions provided
>>>> > here
>>>> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>>>> > but the installing process stops and raises an Excpetion
>>>> > java.lang.ExceptionInInitializerError.
>>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
>>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
>>>> > umls 2014AA version.
>>>> >
>>>> > Best regards,
>>>> >
>>>> > Giovanni
>>>>
>>>>
>>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by Giovanni Di Santo <gi...@gmail.com>.
Hi Vijay,
Thanks for your reply.
I added that file as you suggested. The installation process has passed
that point and now... I suppose... It's filling the database. I have been
running it for 2 hours so far... I suppose it's taking a lot of time cause
it's creating a dictionary lookup table for my local umls installation.
I'll let you know when the installation is over.
Best regards
Giovanni
2014-11-24 13:45 GMT+01:00 vijay garla <vn...@gmail.com>:
> Hi Giovanni,
>
> I think I found a bug in the offending class. Can you copy the attached
> file to this directory:
>
> YTEX_HOME\resources\org\apache\ctakes\ytex\
>
> And retry?
>
> Thanks!
>
> VJ
>
>
> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <
> giovi.disanto@gmail.com> wrote:
>
>> Hi,
>> I have tried to install YTEX in another machine and the same exception is
>> thrown during the installation. The output is slightly different:
>> http://pastebin.com/gVhSFYKp.
>> I suppose I make some mistakes during the installation process.
>> When in the ytes installation guide is written to copy "over" my
>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
>> Is there any already ready ytex version that I can download and use for
>> Linux?
>>
>> I don't really now what could be the problem and I need to test the
>> Semantic Similarity feature.
>>
>> Best regards
>>
>> Giovanni
>>
>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
>>
>>> Adding developer mailing list, as I'm not sure what is causing your
>>> error.
>>>
>>> Kim Ebert
>>> 1.801.669.7342
>>> Perfect Search Corp
>>> http://www.perfectsearchcorp.com/
>>>
>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>>> > Hi,
>>> > I'm trying to install ytex. I've followed the instructions provided
>>> > here
>>> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>>> > but the installing process stops and raises an Excpetion
>>> > java.lang.ExceptionInInitializerError.
>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
>>> > umls 2014AA version.
>>> >
>>> > Best regards,
>>> >
>>> > Giovanni
>>>
>>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by vijay garla <vn...@gmail.com>.
Hi Giovanni,
I think I found a bug in the offending class. Can you copy the attached
file to this directory:
YTEX_HOME\resources\org\apache\ctakes\ytex\
And retry?
Thanks!
VJ
On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo <gi...@gmail.com>
wrote:
> Hi,
> I have tried to install YTEX in another machine and the same exception is
> thrown during the installation. The output is slightly different:
> http://pastebin.com/gVhSFYKp.
> I suppose I make some mistakes during the installation process.
> When in the ytes installation guide is written to copy "over" my
> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
> Is there any already ready ytex version that I can download and use for
> Linux?
>
> I don't really now what could be the problem and I need to test the
> Semantic Similarity feature.
>
> Best regards
>
> Giovanni
>
> 2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
>
>> Adding developer mailing list, as I'm not sure what is causing your error.
>>
>> Kim Ebert
>> 1.801.669.7342
>> Perfect Search Corp
>> http://www.perfectsearchcorp.com/
>>
>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
>> > Hi,
>> > I'm trying to install ytex. I've followed the instructions provided
>> > here
>> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
>> > but the installing process stops and raises an Excpetion
>> > java.lang.ExceptionInInitializerError.
>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
>> > umls 2014AA version.
>> >
>> > Best regards,
>> >
>> > Giovanni
>>
>>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by Giovanni Di Santo <gi...@gmail.com>.
Hi,
I have tried to install YTEX in another machine and the same exception is
thrown during the installation. The output is slightly different:
http://pastebin.com/gVhSFYKp.
I suppose I make some mistakes during the installation process.
When in the ytes installation guide is written to copy "over" my
installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
Is there any already ready ytex version that I can download and use for
Linux?
I don't really now what could be the problem and I need to test the
Semantic Similarity feature.
Best regards
Giovanni
2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
> Adding developer mailing list, as I'm not sure what is causing your error.
>
> Kim Ebert
> 1.801.669.7342
> Perfect Search Corp
> http://www.perfectsearchcorp.com/
>
> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
> > Hi,
> > I'm trying to install ytex. I've followed the instructions provided
> > here
> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
> > but the installing process stops and raises an Excpetion
> > java.lang.ExceptionInInitializerError.
> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
> > umls 2014AA version.
> >
> > Best regards,
> >
> > Giovanni
>
>
Re: YTEX installation Exception java.lang.ExceptionInInitializerError
Posted by Giovanni Di Santo <gi...@gmail.com>.
Hi,
I have tried to install YTEX in another machine and the same exception is
thrown during the installation. The output is slightly different:
http://pastebin.com/gVhSFYKp.
I suppose I make some mistakes during the installation process.
When in the ytes installation guide is written to copy "over" my
installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home".
Is there any already ready ytex version that I can download and use for
Linux?
I don't really now what could be the problem and I need to test the
Semantic Similarity feature.
Best regards
Giovanni
2014-11-12 0:05 GMT+01:00 Kim Ebert <ki...@perfectsearchcorp.com>:
> Adding developer mailing list, as I'm not sure what is causing your error.
>
> Kim Ebert
> 1.801.669.7342
> Perfect Search Corp
> http://www.perfectsearchcorp.com/
>
> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote:
> > Hi,
> > I'm trying to install ytex. I've followed the instructions provided
> > here
> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
> > but the installing process stops and raises an Excpetion
> > java.lang.ExceptionInInitializerError.
> > More precisely I receive that output: http://pastebin.com/PrWyBxhx .
> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the
> > umls 2014AA version.
> >
> > Best regards,
> >
> > Giovanni
>
>