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Posted to dev@ctakes.apache.org by "Finan, Sean" <Se...@childrens.harvard.edu> on 2017/08/04 11:16:45 UTC
RE: Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
Hi Shyam,
Is there any chance that you missed the –Xmx3G in your servlet launch?
Sean
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Friday, August 04, 2017 3:57 AM
To: dev@ctakes.apache.org
Cc: Finan, Sean
Subject: Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
Hi ,
I deployed cTakes App in ubuntu operating system server is Apache Tomcat7, I am getting this error..
Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext loadOnStartup
SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw load() exception
java.sql.SQLException: Out of Memory
at org.hsqldb.jdbc.Util.sqlException(Unknown Source)
at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source)
at org.hsqldb.jdbcDriver.getConnection(Unknown Source)
at org.hsqldb.jdbcDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=zMeCFie3cPXL_o4C3OKCh17EjkajLQEs3Qvx8_K5SGI&s=jYUeOR4QGzHGm0U_U_VNw2YP-yLNKUE8NV66EZY0jEo&e=>.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:116)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36)
at org.apache.catalina.core.StandardWrapper.initServlet(StandardWrapper.java:1269)
at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1182)
at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1072)
at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5368)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5660)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1092)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1984)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: contextInitialized()
Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
INFO: SessionListener: contextInitialized()
Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache', 'org.apache.jasper.compiler.TldLocationsCache@1b277e2c')
.....
But in Windows its working fine,please help me on this issue..
regads,
shyam k.
Re: Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
Posted by Ks Sunder <sh...@gmail.com>.
Thank you sean,
i increased ram size,its working now..
regards,
shyam k
On Fri, Aug 4, 2017 at 4:46 PM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Hi Shyam,
>
>
>
> Is there any chance that you missed the –Xmx3G in your servlet launch?
>
>
>
> Sean
>
>
>
> *From:* Ks Sunder [mailto:shyam769@gmail.com]
> *Sent:* Friday, August 04, 2017 3:57 AM
> *To:* dev@ctakes.apache.org
> *Cc:* Finan, Sean
> *Subject:* Reg : cTakes ubuntu Operating system issue... [EXTERNAL]
>
>
>
> Hi ,
>
>
>
> I deployed cTakes App in ubuntu operating system server is Apache Tomcat7,
> I am getting this error..
>
>
>
>
>
> Aug 02, 2017 9:50:46 AM org.apache.catalina.core.StandardContext
> loadOnStartup
>
> SEVERE: Servlet [cTakesWebClass] in web application [/WebAppcTakes] threw
> load() exception
>
> java.sql.SQLException: Out of Memory
>
> at org.hsqldb.jdbc.Util.sqlException(Unknown Source)
>
> at org.hsqldb.jdbc.jdbcConnection.<init>(Unknown Source)
>
> at org.hsqldb.jdbcDriver.getConnection(Unknown Source)
>
> at org.hsqldb.jdbcDriver.connect(Unknown Source)
>
> at java.sql.DriverManager.getConnection(DriverManager.java:664)
>
> at java.sql.DriverManager.getConnection(DriverManager.java:247)
>
> at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.
> getConnection(JdbcConnectionFactory.java:84)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
>
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(
> NativeConstructorAccessorImpl.java:62)
>
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(
> DelegatingConstructorAccessorImpl.java:45)
>
> at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.
> java:196)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.
> java:156)
>
> at org.apache.ctakes.dictionary.lookup2.dictionary.
> DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.
> java:128)
>
> at org.apache.ctakes.dictionary.lookup2.ae
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__lookup2.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=zMeCFie3cPXL_o4C3OKCh17EjkajLQEs3Qvx8_K5SGI&s=jYUeOR4QGzHGm0U_U_VNw2YP-yLNKUE8NV66EZY0jEo&e=>
> .AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:116)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
>
> at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.
> initialize(PrimitiveAnalysisEngine_impl.java:156)
>
> at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(
> AnalysisEngineFactory_impl.java:94)
>
> at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(
> CompositeResourceFactory_impl.java:62)
>
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
>
> at org.apache.uima.UIMAFramework.produceAnalysisEngine(
> UIMAFramework.java:387)
>
> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.
> setup(ASB_impl.java:254)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initASB(AggregateAnalysisEngine_impl.java:431)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
>
> at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.
> initialize(AggregateAnalysisEngine_impl.java:185)
>
> at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(
> AnalysisEngineFactory.java:711)
>
> at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(
> AggregateBuilder.java:207)
>
> at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:36)
>
> at org.apache.catalina.core.StandardWrapper.initServlet(
> StandardWrapper.java:1269)
>
> at org.apache.catalina.core.StandardWrapper.loadServlet(
> StandardWrapper.java:1182)
>
> at org.apache.catalina.core.StandardWrapper.load(
> StandardWrapper.java:1072)
>
> at org.apache.catalina.core.StandardContext.loadOnStartup(
> StandardContext.java:5368)
>
> at org.apache.catalina.core.StandardContext.startInternal(
> StandardContext.java:5660)
>
> at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
>
> at org.apache.catalina.core.ContainerBase.addChildInternal(
> ContainerBase.java:899)
>
> at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875)
>
> at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652)
>
> at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1092)
>
> at org.apache.catalina.startup.HostConfig$DeployWar.run(
> HostConfig.java:1984)
>
> at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
>
> at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1142)
>
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:617)
>
> at java.lang.Thread.run(Thread.java:748)
>
>
>
> Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
>
> INFO: ContextListener: contextInitialized()
>
> Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
>
> INFO: SessionListener: contextInitialized()
>
> Aug 02, 2017 9:50:51 AM org.apache.catalina.core.ApplicationContext log
>
> INFO: ContextListener: attributeAdded('org.apache.jasper.compiler.TldLocationsCache',
> 'org.apache.jasper.compiler.TldLocationsCache@1b277e2c')
>
>
>
>
>
>
>
>
>
> .....
>
>
>
> But in Windows its working fine,please help me on this issue..
>
>
>
>
>
> regads,
>
> shyam k.
>