Re: Problem trying to load a custom dictionary [EXTERNAL] [EXTERNAL]

["Finan, Sean" <Se...@childrens.harvard.edu>]

Cheers!
________________________________________
From: gandhi rajan <ga...@gmail.com>
Sent: Friday, July 31, 2020 10:33 AM
To: dev@ctakes.apache.org
Subject: Re: Problem trying to load a custom dictionary [EXTERNAL] [EXTERNAL]

* External Email - Caution *


Hi Peter,

We can work together on this if you are interested.

On Fri, Jul 31, 2020 at 7:44 PM Peter Abramowitsch <pa...@gmail.com>
wrote:

> I could do it while the experience is fresh, although I only know the happy
> path and not the deeper details in this area of the suite
> If you want me to, let me know how to get editing privileges on the Wiki.
>
> Peter
>
> On Fri, Jul 31, 2020 at 4:28 AM Finan, Sean <
> Sean.Finan@childrens.harvard.edu> wrote:
>
> > Obviously Jeff is correct in all of his answers.  Thank you Jeff!
> >
> > One comment: DictionaryDescriptor is a deprecated parameter name that is
> > picked up by the piper creator when it inspects the code.  However, I am
> > not sure why the deprecated parameter name isn't working ...
> >
> > The wiki needs additional and more thorough information.  If anybody can
> > volunteer to work on it I (and future users) would really appreciate it!
> >
> > Thanks,
> > Sean
> >
> >
> > ________________________________________
> > From: Peter Abramowitsch <pa...@gmail.com>
> > Sent: Thursday, July 30, 2020 9:02 PM
> > To: dev@ctakes.apache.org
> > Subject: Re: Problem trying to load a custom dictionary [EXTERNAL]
> >
> > * External Email - Caution *
> >
> >
> > Thanks Jeff
> >
> > That worked!
> >
> > Seems like something that should get fixed in the PiperCreator and in the
> > documentation.
> >
> > With a life of assuming that every mistake is my own error, the last
> thing
> > I would have expected was
> > a generator of incorrect params.
> >
> > Peter
> >
> > On Thu, Jul 30, 2020 at 4:59 PM Jeffrey Miller <je...@gmail.com>
> wrote:
> >
> > > Peter,
> > >
> > > 1) This is loaded by cTAKES, you don't need to manually create the
> > > database.
> > > 2) I can't see the highlights here, but I think that file should be
> okay
> > as
> > > created by the GUI.
> > > 3) I think the parameter name to configure your dictionary location is
> > > LookupXml instead of DictionaryDescriptor
> > >
> > > Jeff
> > >
> > > On Thu, Jul 30, 2020 at 6:49 PM Peter Abramowitsch <
> > > pabramowitsch@gmail.com>
> > > wrote:
> > >
> > > > A couple of questions about installing a custom dictionary in lookup
> > > fast.
> > > > I hope I'm not too far off the track.
> > > >
> > > > I've used the dictionary creator with a UMLS install to create the
> > > > dictionary script, prop file, and xml file in my ctakes resources
> tree
> > > >
> > > > 1.  Do I have to manually run this script to execute all its SQL
> > > statements
> > > > into hsqldb or is this executed by the cTakes program when it
> > encounters
> > > > the XML descriptor?
> > > > If manual running is needed, are there instructions on how and where
> to
> > > > load the script?
> > > >
> > > > 2.  The xml file generated by the dictionary creator contains lines
> > with
> > > > duplicate names-- see yellow highlight.  Is this  correct?
> > > > <name>my_dict_v1Terms</name>
> > > >          <property key="jdbcUrl"
> > > >
> > >
> >
> value="jdbc:hsqldb:file:resources/org/apache/ctakes/dictionary/lookup/fast/
> > > > my_dict_v1/my_dict_v1"/>
> > > >
> > > > 3.  Try as I might I cannot get ctakes to load anything other than
> > > > sno_rx.   I'm using a piper file with an entry looking like
> > > >       ....
> > > >       add org.apache.ctakes.dictionary.lookup2.ae
> > > .OverlapJCasTermAnnotator
> > > >
> > > >
> > >
> >
> DictionaryDescriptor=org/apache/ctakes/dictionary/lookup/fast/my_dict_v1.xml
> > > >      ....
> > > > Not sure if they're looked at any more but I also changed these xml
> > files
> > > > under desc as well.
> > > >
> > > >
> > > >
> > > >
> > >
> >
> desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsOverlapLookupAnnotator.xml
> > > >
> > > >
> > > >
> > >
> >
> desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml
> > > >
> > > > But I can't even get it to fail to try to load mine.
> > > > my log looks like this
> > > >
> > > >       30 Jul 2020 15:43:37  INFO AbstractJCasTermAnnotator -
> Exclusion
> > > > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB
> > VBD
> > > > VBG VBN VBP VBZ WDT WP WPS WRB
> > > >       30 Jul 2020 15:43:37  INFO AbstractJCasTermAnnotator - Using
> > > minimum
> > > > term text span: 3
> > > >       30 Jul 2020 15:43:37  INFO AbstractJCasTermAnnotator - Using
> > > > Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/
> > > > sno_rx_16ab.xml
> > > >
> > > >
> > > > Any suggestions?
> > > >
> > > > Regards,  Peter
> > > >
> > >
> >
>


--
Regards,
Gandhi

"The best way to find urself is to lose urself in the service of others !!!"