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Posted to commits@ctakes.apache.org by ch...@apache.org on 2013/04/02 19:44:41 UTC
svn commit: r1463641 [35/42] - in /ctakes/trunk: ctakes-assertion-res/
ctakes-assertion-res/.settings/ ctakes-assertion-res/src/
ctakes-assertion-res/src/main/ ctakes-assertion-res/src/main/resources/
ctakes-assertion-res/src/main/resources/org/ ctakes...
Added: ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.jdt.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.jdt.core.prefs?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.jdt.core.prefs (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.jdt.core.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,88 @@
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Added: ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.ltk.core.refactoring.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.ltk.core.refactoring.prefs?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.ltk.core.refactoring.prefs (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.ltk.core.refactoring.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
+org.eclipse.ltk.core.refactoring.enable.project.refactoring.history=false
Added: ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.m2e.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.m2e.core.prefs?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.m2e.core.prefs (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/.settings/org.eclipse.m2e.core.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1
Added: ctakes/trunk/ctakes-pos-tagger-res/LICENSE
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/LICENSE?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-pos-tagger-res/LICENSE (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/LICENSE Tue Apr 2 17:41:30 2013
@@ -0,0 +1,202 @@
+
+ Apache License
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+ names, trademarks, service marks, or product names of the Licensor,
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+ 7. Disclaimer of Warranty. Unless required by applicable law or
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+ Contributor provides its Contributions) on an "AS IS" BASIS,
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Added: ctakes/trunk/ctakes-pos-tagger-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/pom.xml?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-pos-tagger-res/pom.xml (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/pom.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>3.1.0-SNAPSHOT</version>
+ </parent>
+ <artifactId>ctakes-pos-tagger-res</artifactId>
+ <name>Apache cTAKES Resources pos-tagger</name>
+ <description>Resources Project for ctakes-pos-tagger</description>
+</project>
\ No newline at end of file
Added: ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README?rev=1463641&view=auto
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--- ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README Tue Apr 2 17:41:30 2013
@@ -0,0 +1,27 @@
+
+A part-of-speech tagging model and tag dictionary are included with this project.
+
+The model derives from a combination of GENIA, Penn Treebank (Wall Street Journal) and anonymized
+clinical data per Safe Harbor HIPAA guidelines. Prior to model building, the clinical data was
+deidentified for patient names to preserve patient confidentiality. Any person name in the model
+will originate from non-patient data sources.
+
+
+To build a model of your own, you need to
+
+1) obtain training data - see data/pos/training/README
+2) build a model using the training data.
+
+After you have obtained training data, you can build a model by running the following:
+
+java opennlp.tools.postag.POSTaggerME <training-data> <model-name> <iterations> <cutoff>
+where <training-data> is an OpenNLP training data file as described in data/pos/training/README
+ <model-name> The file name of the resulting model. The name should end with either '.txt'
+ (for a plain text model) or '.bin.gz' (for a compressed binary model).
+ <iterations> The iterations argument determines how many training iterations will be
+ performed. The default is 100.
+ <cutoff> The cutoff argument determines the minimum number of times a feature has to be
+ seen to be considered for inclusion in the model. The default cutoff is 5.
+
+The arguments <iterations> and <cutoff> are, taken together, optional - i.e. you should provide
+both or provide neither.
Added: ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/postagger.model.bin.gz
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/postagger.model.bin.gz?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/tag.dictionary.txt
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/tag.dictionary.txt?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/tag.dictionary.txt (added)
+++ ctakes/trunk/ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/small/tag.dictionary.txt Tue Apr 2 17:41:30 2013
@@ -0,0 +1,10 @@
+Use IN
+of IN
+new IN
+biologic IN
+markers IN
+in IN
+the IN
+ovulation IN
+induction IN
+. IN