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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/05/17 20:03:16 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #799
See <https://builds.apache.org/job/ctakes-trunk-compiletest/799/changes>
Changes:
[tmill] Fixes to thyme readers to allow for reading deepphe data.
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[...truncated 15243 lines...]
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
17 May 2016 20:02:21 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
17 May 2016 20:02:21 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
17 May 2016 20:02:21 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
17 May 2016 20:02:22 INFO SentenceDetector - Starting processing.
17 May 2016 20:02:22 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
17 May 2016 20:02:22 INFO LvgAnnotator - process(JCas)
17 May 2016 20:02:22 INFO ContextDependentTokenizerAnnotator - process(JCas)
17 May 2016 20:02:22 INFO POSTagger - process(JCas)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
17 May 2016 20:02:22 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument
id: 0
argument: TimeMention
sofa: _InitialView
begin: 58
end: 66
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: <null>
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.448 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
17 May 2016 20:02:25 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
..Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000754280000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/hs_err_pid4041.log>
Results :
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.145s]
[INFO] Apache cTAKES common type system .................. SUCCESS [9.641s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.772s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.711s]
[INFO] Apache cTAKES core ................................ SUCCESS [35.029s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [1.430s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.724s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.356s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.115s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.678s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [20.320s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.666s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.367s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.674s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.072s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.311s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.190s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.578s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.233s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.546s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.300s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.225s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [28.167s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.148s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [9.347s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.473s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.303s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.621s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [9.758s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.737s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [7.463s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.503s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.788s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.567s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.083s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [4.499s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [4.825s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [12.766s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [2.557s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [11.470s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [11.652s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [10.461s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:15.744s]
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:59.069s
[INFO] Finished at: Tue May 17 20:02:29 UTC 2016
[INFO] Final Memory: 107M/674M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Jenkins build is back to normal : ctakes-trunk-compiletest #800
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/800/changes>