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Posted to users@airavata.apache.org by 안신영 <sy...@etri.re.kr> on 2013/04/05 11:00:27 UTC
Another Question on parallel execution!
Hi guys!
Let’s assume that a workflow contains several works(services). Some works are independent with each other, some works are dependent some other works.
Dependency mean that a work should be executed after another dependent work’s completion.
In this case, How can I configure some independent work to be executed simultaneously?
I will run this workflow in HPC cluster.
Regards,
Shinyoung.
Re: Another Question on parallel execution!
Posted by Suresh Marru <sm...@apache.org>.
Hi Shinyoung,
This is indeed a bug. I was just playing with few parallel scenarios and was able to reproduce it. Can you please raise a JIRA for this as well.
Thanks for all the testing and reporting,
Suresh
On Apr 9, 2013, at 4:00 AM, 안신영 <sy...@etri.re.kr> wrote:
> Hi~ Suresh!
> I draw my workflow and executed the workflow as follows.
> bwa_aln_fwd_invoke and bwa_aln_bwd_invoke do not have dependency.
> As your comment, I can expect bwa_aln_fwd_invoke and bwa_aln_bwd_invoke should run in parallel.
> But bwa_aln_fwd_invoke and bwa_aln_bwd_invoke do not run in parallel, they run serially
> I didn’t configure any HPC configuration for the web service.
> <image001.png>
>
> From: Suresh Marru [mailto:smarru@apache.org]
> Sent: Friday, April 05, 2013 9:19 PM
> To: users@airavata.apache.org
> Subject: Re: Another Question on parallel execution!
>
> Hi Shinyoung,
>
> Just drop both the applications in parallel and do not connect them. There can be multiple independent paths in the workflow and Airavata will execute them in parallel. If you connect the edges (inputs/outputs) then it assumes data dependency. You can connect the corners on the nodes which will be shown as dotted lines that will create control dependencies -- that is even if you do not have data dependency, execute one after another. But your case is simple, just have them mutually independent.
>
> Suresh
>
> On Apr 5, 2013, at 5:00 AM, 안신영 <sy...@etri.re.kr> wrote:
>
>
> Hi guys!
>
> Let’s assume that a workflow contains several works(services). Some works are independent with each other, some works are dependent some other works.
> Dependency mean that a work should be executed after another dependent work’s completion.
> In this case, How can I configure some independent work to be executed simultaneously?
> I will run this workflow in HPC cluster.
>
> Regards,
> Shinyoung.
RE: Another Question on parallel execution!
Posted by 안신영 <sy...@etri.re.kr>.
Hi~ Suresh!
I draw my workflow and executed the workflow as follows.
bwa_aln_fwd_invoke and bwa_aln_bwd_invoke do not have dependency.
As your comment, I can expect bwa_aln_fwd_invoke and bwa_aln_bwd_invoke should run in parallel.
But bwa_aln_fwd_invoke and bwa_aln_bwd_invoke do not run in parallel, they run serially
I didn’t configure any HPC configuration for the web service.
[cid:image001.png@01CE3542.C9A8A730]
From: Suresh Marru [mailto:smarru@apache.org]
Sent: Friday, April 05, 2013 9:19 PM
To: users@airavata.apache.org
Subject: Re: Another Question on parallel execution!
Hi Shinyoung,
Just drop both the applications in parallel and do not connect them. There can be multiple independent paths in the workflow and Airavata will execute them in parallel. If you connect the edges (inputs/outputs) then it assumes data dependency. You can connect the corners on the nodes which will be shown as dotted lines that will create control dependencies -- that is even if you do not have data dependency, execute one after another. But your case is simple, just have them mutually independent.
Suresh
On Apr 5, 2013, at 5:00 AM, 안신영 <sy...@etri.re.kr>> wrote:
Hi guys!
Let’s assume that a workflow contains several works(services). Some works are independent with each other, some works are dependent some other works.
Dependency mean that a work should be executed after another dependent work’s completion.
In this case, How can I configure some independent work to be executed simultaneously?
I will run this workflow in HPC cluster.
Regards,
Shinyoung.
Re: Another Question on parallel execution!
Posted by Suresh Marru <sm...@apache.org>.
Hi Shinyoung,
Just drop both the applications in parallel and do not connect them. There can be multiple independent paths in the workflow and Airavata will execute them in parallel. If you connect the edges (inputs/outputs) then it assumes data dependency. You can connect the corners on the nodes which will be shown as dotted lines that will create control dependencies -- that is even if you do not have data dependency, execute one after another. But your case is simple, just have them mutually independent.
Suresh
On Apr 5, 2013, at 5:00 AM, 안신영 <sy...@etri.re.kr> wrote:
> Hi guys!
>
> Let’s assume that a workflow contains several works(services). Some works are independent with each other, some works are dependent some other works.
> Dependency mean that a work should be executed after another dependent work’s completion.
> In this case, How can I configure some independent work to be executed simultaneously?
> I will run this workflow in HPC cluster.
>
> Regards,
> Shinyoung.