[02/10] airavata git commit: Revert "Revert "removing previous airavata client API - AIRAVATA-1371""

[ch...@apache.org]

http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java
deleted file mode 100644
index 1936593..0000000
--- a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java
+++ /dev/null
@@ -1,823 +0,0 @@
-///*
-// *
-// * Licensed to the Apache Software Foundation (ASF) under one
-// * or more contributor license agreements.  See the NOTICE file
-// * distributed with this work for additional information
-// * regarding copyright ownership.  The ASF licenses this file
-// * to you under the Apache License, Version 2.0 (the
-// * "License"); you may not use this file except in compliance
-// * with the License.  You may obtain a copy of the License at
-// *
-// *   http://www.apache.org/licenses/LICENSE-2.0
-// *
-// * Unless required by applicable law or agreed to in writing,
-// * software distributed under the License is distributed on an
-// * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-// * KIND, either express or implied.  See the License for the
-// * specific language governing permissions and limitations
-// * under the License.
-// *
-//*/
-//package org.apache.airavata.client.tools;
-//
-//import org.airavata.appcatalog.cpi.AppCatalog;
-//import org.airavata.appcatalog.cpi.AppCatalogException;
-//import org.apache.airavata.api.Airavata;
-//import org.apache.airavata.common.utils.ClientSettings;
-//import org.apache.airavata.model.appcatalog.appdeployment.ApplicationDeploymentDescription;
-//import org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule;
-//import org.apache.airavata.model.appcatalog.appdeployment.ApplicationParallelismType;
-//import org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription;
-//import org.apache.airavata.model.appcatalog.appinterface.DataType;
-//import org.apache.airavata.model.appcatalog.computeresource.*;
-//import org.apache.airavata.model.appcatalog.gatewayprofile.ComputeResourcePreference;
-//import org.apache.airavata.model.appcatalog.gatewayprofile.GatewayResourceProfile;
-//import org.apache.airavata.model.error.AiravataClientException;
-//import org.apache.airavata.model.error.AiravataSystemException;
-//import org.apache.airavata.model.error.InvalidRequestException;
-//import org.apache.thrift.TException;
-//
-//import java.io.File;
-//import java.util.*;
-//
-///**
-// * This class has been moved to integration-tests module, use that instead of this
-// */
-//@Deprecated
-//public class DocumentCreatorNew {
-//
-//    private AppCatalog appcatalog = null;
-//    private String trestleshpcHostAddress = "trestles.sdsc.edu";
-//    private String lonestarHostAddress = "lonestar.tacc.utexas.edu";
-//    private String stampedeHostAddress = "stampede.tacc.xsede.org";
-//    private String gridftpAddress = "gsiftp://trestles-dm1.sdsc.edu:2811";
-//    private String gramAddress = "trestles-login1.sdsc.edu:2119/jobmanager-pbstest2";
-//    private String bigRed2HostAddress = "bigred2.uits.iu.edu";
-//
-//    //App Module Id's
-//    private static String echoModuleId;
-//    private static String amberModuleId;
-//    private static String autoDockModuleId;
-//    private static String espressoModuleId;
-//    private static String gromacsModuleId;
-//    private static String lammpsModuleId;
-//    private static String nwChemModuleId;
-//    private static String trinityModuleId;
-//    private static String wrfModuleId;
-//    private Airavata.Client client;
-//    private GatewayResourceProfile gatewayResourceProfile;
-//
-//    public DocumentCreatorNew(Airavata.Client client) throws AppCatalogException {
-//        this.client = client;
-//    }
-//
-//    public String createLocalHostDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//        //Define compute resource host
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(
-//                "localhost", new ArrayList<String>(Arrays.asList(new String[]{"127.0.0.1"})), new ArrayList<String>(Arrays.asList(new String[]{"127.0.0.1"})));
-////    	host.setIsEmpty(true);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        LOCALSubmission localSubmission = new LOCALSubmission();
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.FORK, null, null, null);
-//        localSubmission.setResourceJobManager(resourceJobManager);
-//        client.addLocalSubmissionDetails(host.getComputeResourceId(), 1, localSubmission);
-//
-//        LOCALDataMovement localDataMovement = new LOCALDataMovement();
-//        client.addLocalDataMovementDetails(host.getComputeResourceId(), 1, localDataMovement);
-//
-//        //Define application module
-//        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.0.0", "Local host echo applications");
-//        module.setAppModuleId(client.registerApplicationModule(module));
-//
-//        //Define application interfaces
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-////    	application.setIsEmpty(false);
-//        application.setApplicationName("SimpleEcho0");
-//        application.addToApplicationModules(module.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "Echo Input Data", null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        //Define application deployment
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Local echo app depoyment");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        //Define gateway profile
-//        ComputeResourcePreference computeResourcePreference = DocumentCreatorUtils.createComputeResourcePreference(
-//                host.getComputeResourceId(), "/tmp", null,
-//                false, null,
-//                null, null);
-//        gatewayResourceProfile = new GatewayResourceProfile();
-////		gatewayResourceProfile.setGatewayID("default");
-//        gatewayResourceProfile.setGatewayName(ClientSettings.getSetting("default.registry.gateway", "php_reference_gateway"));
-//        gatewayResourceProfile.addToComputeResourcePreferences(computeResourcePreference);
-//        String gatewayId = client.registerGatewayResourceProfile(gatewayResourceProfile);
-//        gatewayResourceProfile.setGatewayID(gatewayId);
-//        client.addGatewayComputeResourcePreference(gatewayResourceProfile.getGatewayID(), host.getComputeResourceId(), computeResourcePreference);
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    private GatewayResourceProfile getGatewayResourceProfile() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-////    	if (gatewayResourceProfile==null){
-////    		try {
-////				gatewayResourceProfile = client.getGatewayResourceProfile(ga);
-////			} catch (Exception e) {
-////
-////			}
-//        if (gatewayResourceProfile == null) {
-//            gatewayResourceProfile = new GatewayResourceProfile();
-////				gatewayResourceProfile.setGatewayID("default");
-//            gatewayResourceProfile.setGatewayName("default");
-//            gatewayResourceProfile.setGatewayID(client.registerGatewayResourceProfile(gatewayResourceProfile));
-//        }
-////    	}
-//        return gatewayResourceProfile;
-//
-//    }
-//
-//    public String createSSHHostDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription("gw111.iu.xsede.org", null, null);
-//        host.addToIpAddresses("gw111.iu.xsede.org");
-//        host.addToHostAliases("gw111.iu.xsede.org");
-//        host.setResourceDescription("gw111 ssh access");
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//
-//        SSHJobSubmission jobSubmission = new SSHJobSubmission();
-//        jobSubmission.setSshPort(22);
-//        jobSubmission.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.FORK, null, null, null);
-//        jobSubmission.setResourceJobManager(resourceJobManager);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, jobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.1", null);
-//        module.setAppModuleId(client.registerApplicationModule(module));
-//        ;
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "SSHEchoApplication");
-//        client.registerApplicationDeployment(deployment);
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-////    	application.setIsEmpty(false);
-//        application.setApplicationName("SSHEcho1");
-//        application.addToApplicationModules(module.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//        client.registerApplicationInterface(application);
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/tmp", null, false, null, null, null));
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    //
-////    public void createGramDocs() {
-//////        /*
-//////           creating host descriptor for gram
-//////        */
-//////        HostDescription host = new HostDescription(GlobusHostType.type);
-//////        host.getType().setHostAddress(trestleshpcHostAddress);
-//////        host.getType().setHostName(trestleshpcHostAddress);
-//////        ((GlobusHostType) host.getType()).setGlobusGateKeeperEndPointArray(new String[]{gramAddress});
-//////        ((GlobusHostType) host.getType()).setGridFTPEndPointArray(new String[]{gridftpAddress});
-//////        try {
-//////            airavataAPI.getApplicationManager().saveHostDescription(host);
-//////        } catch (AiravataAPIInvocationException e) {
-//////            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//////        }
-//////
-//////
-//////        /*
-//////        * Service Description creation and saving
-//////        */
-//////        String serviceName = "SimpleEcho1";
-//////        ServiceDescription serv = new ServiceDescription();
-//////        serv.getType().setName(serviceName);
-//////
-//////        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
-//////        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
-//////
-//////        InputParameterType input = InputParameterType.Factory.newInstance();
-//////        input.setParameterName("echo_input");
-//////        ParameterType parameterType = input.addNewParameterType();
-//////        parameterType.setType(DataType.STRING);
-//////        parameterType.setName("String");
-//////
-//////        OutputParameterType output = OutputParameterType.Factory.newInstance();
-//////        output.setParameterName("echo_output");
-//////        ParameterType parameterType1 = output.addNewParameterType();
-//////        parameterType1.setType(DataType.STRING);
-//////        parameterType1.setName("String");
-//////
-//////        inputList.add(input);
-//////        outputList.add(output);
-//////
-//////        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
-//////        OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
-//////
-//////        serv.getType().setInputParametersArray(inputParamList);
-//////        serv.getType().setOutputParametersArray(outputParamList);
-//////        try {
-//////            airavataAPI.getApplicationManager().saveServiceDescription(serv);
-//////        } catch (AiravataAPIInvocationException e) {
-//////            e.printStackTrace();
-//////        }
-//////
-//////        /*
-//////            Application descriptor creation and saving
-//////         */
-//////        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
-//////        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
-//////        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-//////        name.setStringValue("EchoLocal");
-//////        app.setApplicationName(name);
-//////        ProjectAccountType projectAccountType = app.addNewProjectAccount();
-//////        projectAccountType.setProjectAccountNumber("sds128");
-//////
-//////        QueueType queueType = app.addNewQueue();
-//////        queueType.setQueueName("normal");
-//////
-//////        app.setCpuCount(1);
-//////        app.setJobType(JobTypeType.SERIAL);
-//////        app.setNodeCount(1);
-//////        app.setProcessorsPerNode(1);
-//////
-//////        /*
-//////           * Use bat file if it is compiled on Windows
-//////           */
-//////        app.setExecutableLocation("/bin/echo");
-//////
-//////        /*
-//////           * Default tmp location
-//////           */
-//////        String tempDir = "/home/ogce/scratch";
-//////        app.setScratchWorkingDirectory(tempDir);
-//////        app.setMaxMemory(10);
-//////
-//////
-//////        try {
-//////            airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, trestleshpcHostAddress, appDesc);
-//////        } catch (AiravataAPIInvocationException e) {
-//////            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//////        }
-////    }
-////
-//    public String createPBSDocsForOGCE_Echo() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(trestleshpcHostAddress, null, null);
-//        host.addToIpAddresses(trestleshpcHostAddress);
-//        host.addToHostAliases(trestleshpcHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.PBS, "/opt/torque/bin/", null, null);
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(22);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule module1 = DocumentCreatorUtils.createApplicationModule("echo", "1.2", null);
-//        module1.setAppModuleId(client.registerApplicationModule(module1));
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-////    	application.setIsEmpty(false);
-//        application.setApplicationName("SimpleEcho2");
-//        application.addToApplicationModules(module1.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "echo_input", null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module1.getAppModuleId(), "/home/ogce/echo.sh", ApplicationParallelismType.SERIAL, "Echo application");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    public String createPBSDocsForOGCE_WRF() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(trestleshpcHostAddress, null, null);
-//        host.addToIpAddresses(trestleshpcHostAddress);
-//        host.addToHostAliases(trestleshpcHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.PBS, "/opt/torque/bin/", null, null);
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(22);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));
-//
-//        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
-//        module2.setAppModuleId(client.registerApplicationModule(module2));
-//        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
-////    	application2.setIsEmpty(false);
-//        application2.setApplicationName("WRF");
-//        application2.addToApplicationModules(module2.getAppModuleId());
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));
-//
-//        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
-//        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
-//        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));
-//
-//        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
-//        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
-//        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();
-//    }
-//
-//    public String createSlumWRFDocs() throws AppCatalogException, TException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(stampedeHostAddress, null, null);
-//        host.addToHostAliases(stampedeHostAddress);
-//        host.addToIpAddresses(stampedeHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.SLURM, "/usr/bin/", null, "push");
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(2222);
-//
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
-//
-//        ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
-//        module2.setAppModuleId(client.registerApplicationModule(module2));
-//        ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
-//        //    	application2.setIsEmpty(false);
-//        application2.setApplicationName("WRF");
-//        application2.addToApplicationModules(module2.getAppModuleId());
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
-//        application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));
-//
-//        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
-//        application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
-//        application2.setApplicationInterfaceId(client.registerApplicationInterface(application2));
-//
-//        ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
-//        deployment2.setAppDeploymentId(client.registerApplicationDeployment(deployment2));
-//        return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();
-//
-//    }
-//
-//    public String createSlurmDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(stampedeHostAddress, null, null);
-//        host.addToHostAliases(stampedeHostAddress);
-//        host.addToIpAddresses(stampedeHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.SLURM, "/usr/bin/", null, "push");
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(2222);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.3", null);
-//        module.setAppModuleId(client.registerApplicationModule(module));
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-////    	application.setIsEmpty(false);
-//        application.setApplicationName("SimpleEcho3");
-//        application.addToApplicationModules(module.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    public String createSGEDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(lonestarHostAddress, null, null);
-//        host.addToHostAliases(lonestarHostAddress);
-//        host.addToIpAddresses(lonestarHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.UGE, "/opt/sge6.2/bin/lx24-amd64/", null, null);
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(22);
-//
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.4", null);
-//        module.setAppModuleId(client.registerApplicationModule(module));
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-////    	application.setIsEmpty(false);
-//        application.setApplicationName("SimpleEcho4");
-//        application.addToApplicationModules(module.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-////	public void createEchoHostDocs() {
-////		String serviceName = "Echo";
-////		ServiceDescription serviceDescription = new ServiceDescription();
-////		List<InputParameterType> inputParameters = new ArrayList<InputParameterType>();
-////		List<OutputParameterType> outputParameters = new ArrayList<OutputParameterType>();
-////		serviceDescription.getType().setName(serviceName);
-////		serviceDescription.getType().setDescription("Echo service");
-////		// Creating input parameters
-////		InputParameterType parameter = InputParameterType.Factory.newInstance();
-////		parameter.setParameterName("echo_input");
-////		parameter.setParameterDescription("echo input");
-////		ParameterType parameterType = parameter.addNewParameterType();
-////		parameterType.setType(DataType.STRING);
-////		parameterType.setName("String");
-////		inputParameters.add(parameter);
-////
-////		// Creating output parameters
-////		OutputParameterType outputParameter = OutputParameterType.Factory.newInstance();
-////		outputParameter.setParameterName("echo_output");
-////		outputParameter.setParameterDescription("Echo output");
-////		ParameterType outputParaType = outputParameter.addNewParameterType();
-////		outputParaType.setType(DataType.STRING);
-////		outputParaType.setName("String");
-////		outputParameters.add(outputParameter);
-////
-////		// Setting input and output parameters to serviceDescriptor
-////		serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new InputParameterType[] {}));
-////		serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new OutputParameterType[] {}));
-////
-////		try {
-////			airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
-////		} catch (AiravataAPIInvocationException e) {
-////			e.printStackTrace(); // To change body of catch statement use File |
-////									// Settings | File Templates.
-////		}
-////		// Localhost
-////		ApplicationDescription applicationDeploymentDescription = new ApplicationDescription();
-////		ApplicationDeploymentDescriptionType applicationDeploymentDescriptionType = applicationDeploymentDescription.getType();
-////		applicationDeploymentDescriptionType.addNewApplicationName().setStringValue(serviceName);
-////		applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
-////		applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
-////
-////		try {
-////			airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, "localhost", applicationDeploymentDescription);
-////		} catch (AiravataAPIInvocationException e) {
-////			e.printStackTrace(); // To change body of catch statement use File |
-////									// Settings | File Templates.
-////		}
-////		// Stampede
-////		/*
-////		 * Application descriptor creation and saving
-////		 */
-////		ApplicationDescription appDesc1 = new ApplicationDescription(HpcApplicationDeploymentType.type);
-////		HpcApplicationDeploymentType app1 = (HpcApplicationDeploymentType) appDesc1.getType();
-////		ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-////		name.setStringValue(serviceName);
-////		app1.setApplicationName(name);
-////		ProjectAccountType projectAccountType = app1.addNewProjectAccount();
-////		projectAccountType.setProjectAccountNumber("TG-STA110014S");
-////
-////		QueueType queueType = app1.addNewQueue();
-////		queueType.setQueueName("normal");
-////
-////		app1.setCpuCount(1);
-////		app1.setJobType(JobTypeType.SERIAL);
-////		app1.setNodeCount(1);
-////		app1.setProcessorsPerNode(1);
-////		app1.setMaxWallTime(10);
-////		/*
-////		 * Use bat file if it is compiled on Windows
-////		 */
-////		app1.setExecutableLocation("/bin/echo");
-////
-////		/*
-////		 * Default tmp location
-////		 */
-////		String tempDir = "/home1/01437/ogce";
-////
-////		app1.setScratchWorkingDirectory(tempDir);
-////		app1.setInstalledParentPath("/usr/bin/");
-////
-////		try {
-////			airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, stampedeHostAddress, appDesc1);
-////		} catch (AiravataAPIInvocationException e) {
-////			e.printStackTrace(); // To change body of catch statement use File |
-////									// Settings | File Templates.
-////		}
-////		// Trestles
-////		/*
-////		 * Application descriptor creation and saving
-////		 */
-////		ApplicationDescription appDesc2 = new ApplicationDescription(HpcApplicationDeploymentType.type);
-////		HpcApplicationDeploymentType app2 = (HpcApplicationDeploymentType) appDesc2.getType();
-////		ApplicationDeploymentDescriptionType.ApplicationName name2 = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-////		name2.setStringValue(serviceName);
-////		app2.setApplicationName(name);
-////		ProjectAccountType projectAccountType2 = app2.addNewProjectAccount();
-////		projectAccountType2.setProjectAccountNumber("sds128");
-////
-////		QueueType queueType2 = app2.addNewQueue();
-////		queueType2.setQueueName("normal");
-////
-////		app2.setCpuCount(1);
-////		app2.setJobType(JobTypeType.SERIAL);
-////		app2.setNodeCount(1);
-////		app2.setProcessorsPerNode(1);
-////		app2.setMaxWallTime(10);
-////		/*
-////		 * Use bat file if it is compiled on Windows
-////		 */
-////		app2.setExecutableLocation("/bin/echo");
-////
-////		/*
-////		 * Default tmp location
-////		 */
-////		String tempDir2 = "/home/ogce/scratch";
-////
-////		app2.setScratchWorkingDirectory(tempDir2);
-////		app2.setInstalledParentPath("/opt/torque/bin/");
-////
-////		try {
-////			airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, trestleshpcHostAddress, appDesc2);
-////		} catch (AiravataAPIInvocationException e) {
-////			e.printStackTrace(); // To change body of catch statement use File |
-////									// Settings | File Templates.
-////		}
-////		// Lonestar
-////		/*
-////		 * Application descriptor creation and saving
-////		 */
-////		ApplicationDescription appDesc3 = new ApplicationDescription(HpcApplicationDeploymentType.type);
-////		HpcApplicationDeploymentType app3 = (HpcApplicationDeploymentType) appDesc3.getType();
-////		ApplicationDeploymentDescriptionType.ApplicationName name3 = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-////		name3.setStringValue(serviceName);
-////		app3.setApplicationName(name);
-////		ProjectAccountType projectAccountType3 = app3.addNewProjectAccount();
-////		projectAccountType3.setProjectAccountNumber("TG-STA110014S");
-////
-////		QueueType queueType3 = app3.addNewQueue();
-////		queueType3.setQueueName("normal");
-////
-////		app3.setCpuCount(1);
-////		app3.setJobType(JobTypeType.SERIAL);
-////		app3.setNodeCount(1);
-////		app3.setProcessorsPerNode(1);
-////		app3.setMaxWallTime(10);
-////		/*
-////		 * Use bat file if it is compiled on Windows
-////		 */
-////		app3.setExecutableLocation("/bin/echo");
-////
-////		/*
-////		 * Default tmp location
-////		 */
-////		String tempDir3 = "/home1/01437/ogce";
-////
-////		app3.setScratchWorkingDirectory(tempDir3);
-////		app3.setInstalledParentPath("/opt/sge6.2/bin/lx24-amd64/");
-////
-////		try {
-////			airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, lonestarHostAddress, appDesc3);
-////		} catch (AiravataAPIInvocationException e) {
-////			e.printStackTrace(); // To change body of catch statement use File |
-////									// Settings | File Templates.
-////		}
-////
-////	}
-//
-//    public String createBigRedDocs() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException, AppCatalogException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription("bigred2", null, null);
-//        host.addToHostAliases(bigRed2HostAddress);
-//        host.addToIpAddresses(bigRed2HostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//
-//        Map<JobManagerCommand, String> commands = new HashMap<JobManagerCommand, String>();
-//        commands.put(JobManagerCommand.SUBMISSION, "aprun -n");
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.UGE, "/opt/torque/torque-4.2.3.1/bin/", commands, null);
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        sshJobSubmission.setSshPort(22);
-//
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.5", null);
-//        module.setAppModuleId(client.registerApplicationModule(module));
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-//        application.setApplicationName("SimpleEchoBR");
-//        application.addToApplicationModules(module.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/N/u/lginnali/BigRed2/myjob/test.sh", ApplicationParallelismType.SERIAL, "EchoLocal");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        String date = (new Date()).toString();
-//        date = date.replaceAll(" ", "_");
-//        date = date.replaceAll(":", "_");
-//        String tempDir = "/N/u/lginnali/BigRed2/myjob";
-//        tempDir = tempDir + File.separator + "SimpleEcho" + "_" + date + "_" + UUID.randomUUID();
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), tempDir, "TG-STA110014S", false, null, null, null));
-//
-//
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    public String createBigRedAmberDocs() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException, AppCatalogException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription("bigred2", null, null);
-//        host.addToHostAliases(bigRed2HostAddress);
-//        host.addToIpAddresses(bigRed2HostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//
-//        Map<JobManagerCommand, String> commands = new HashMap<JobManagerCommand, String>();
-//        commands.put(JobManagerCommand.SUBMISSION, "aprun -n 4");
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.UGE, "/opt/torque/torque-4.2.3.1/bin/", commands, null);
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        sshJobSubmission.setSshPort(22);
-//
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.SSH_KEYS);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//
-//        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
-//        amodule.setAppModuleId(client.registerApplicationModule(amodule));
-//
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-//        application.setApplicationName("AmberBR2");
-//        application.addToApplicationModules(amodule.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/N/u/cgateway/BigRed2/sandbox/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberBR2");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//
-//        String date = (new Date()).toString();
-//        date = date.replaceAll(" ", "_");
-//        date = date.replaceAll(":", "_");
-//        String tempDir = "/N/u/cgateway/BigRed2/sandbox/jobs";
-//        tempDir = tempDir + File.separator +
-//                "Amber";
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), tempDir, null, false, null, null, null));
-//
-//
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//    }
-//
-//    public String createStampedeAmberDocs() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException, AppCatalogException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(stampedeHostAddress, null, null);
-//        host.addToHostAliases(stampedeHostAddress);
-//        host.addToIpAddresses(stampedeHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.SLURM, "/usr/bin/", null, "push");
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(2222);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
-//        amodule.setAppModuleId(client.registerApplicationModule(amodule));
-//
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-//        application.setApplicationName("AmberBR2");
-//        application.addToApplicationModules(amodule.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberStampede");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
-//
-//
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//
-//    }
-//
-//    public String createTrestlesAmberDocs() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException, AppCatalogException {
-//        ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(trestleshpcHostAddress, null, null);
-//        host.addToIpAddresses(trestleshpcHostAddress);
-//        host.addToHostAliases(trestleshpcHostAddress);
-//        host.setComputeResourceId(client.registerComputeResource(host));
-//
-//        SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
-//        ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.PBS, "/opt/torque/bin/", null, null);
-//        sshJobSubmission.setResourceJobManager(resourceJobManager);
-//        sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
-//        sshJobSubmission.setSshPort(22);
-//        client.addSSHJobSubmissionDetails(host.getComputeResourceId(), 1, sshJobSubmission);
-//
-//        SCPDataMovement scpDataMovement = new SCPDataMovement();
-//        scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
-//        scpDataMovement.setSshPort(22);
-//        client.addSCPDataMovementDetails(host.getComputeResourceId(), 1, scpDataMovement);
-//
-//        ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
-//        amodule.setAppModuleId(client.registerApplicationModule(amodule));
-//
-//
-//        ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
-//        application.setApplicationName("AmberTrestles");
-//        application.addToApplicationModules(amodule.getAppModuleId());
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
-//        application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
-//        application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
-//        application.setApplicationInterfaceId(client.registerApplicationInterface(application));
-//
-//        ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/home/ogce/production/app_wrappers/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberStampede");
-//        deployment.setAppDeploymentId(client.registerApplicationDeployment(deployment));
-//
-//        client.addGatewayComputeResourcePreference(getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/oasis/scratch/trestles/ogce/temp_project/", "sds128", false, null, null, null));
-//
-//
-//        return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
-//
-//    }
-//
-//
-//}
-//

http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorUtils.java
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorUtils.java b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorUtils.java
deleted file mode 100644
index d27d8cf..0000000
--- a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorUtils.java
+++ /dev/null
@@ -1,165 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.client.tools;
-
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-
-import org.airavata.appcatalog.cpi.AppCatalogException;
-import org.apache.airavata.model.appcatalog.appdeployment.ApplicationDeploymentDescription;
-import org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule;
-import org.apache.airavata.model.appcatalog.appdeployment.ApplicationParallelismType;
-import org.apache.airavata.model.appcatalog.appinterface.InputDataObjectType;
-import org.apache.airavata.model.appcatalog.appinterface.OutputDataObjectType;
-import org.apache.airavata.model.appcatalog.computeresource.ComputeResourceDescription;
-import org.apache.airavata.model.appcatalog.computeresource.DataMovementInterface;
-import org.apache.airavata.model.appcatalog.computeresource.DataMovementProtocol;
-import org.apache.airavata.model.appcatalog.computeresource.JobManagerCommand;
-import org.apache.airavata.model.appcatalog.computeresource.JobSubmissionInterface;
-import org.apache.airavata.model.appcatalog.computeresource.JobSubmissionProtocol;
-import org.apache.airavata.model.appcatalog.computeresource.ResourceJobManager;
-import org.apache.airavata.model.appcatalog.computeresource.ResourceJobManagerType;
-import org.apache.airavata.model.appcatalog.gatewayprofile.ComputeResourcePreference;
-
-/**
- * This class has been moved to integration-tests module, use that instead of this
- */
-@Deprecated
-public class DocumentCreatorUtils {
-
-	public static ComputeResourcePreference createComputeResourcePreference(String computeResourceId, String scratchLocation,
-			String allocationProjectNumber, boolean overridebyAiravata,
-			String preferredBatchQueue, String preferredJobSubmissionProtocol,
-			String preferredDataMovementProtocol) throws AppCatalogException {
-		ComputeResourcePreference computeResourcePreference = new ComputeResourcePreference();
-		computeResourcePreference.setComputeResourceId(computeResourceId);
-		computeResourcePreference.setOverridebyAiravata(overridebyAiravata);
-		computeResourcePreference.setAllocationProjectNumber(allocationProjectNumber);
-		computeResourcePreference.setPreferredBatchQueue(preferredBatchQueue);
-		computeResourcePreference.setPreferredDataMovementProtocol(DataMovementProtocol.valueOf(preferredDataMovementProtocol));
-		computeResourcePreference.setPreferredJobSubmissionProtocol(JobSubmissionProtocol.valueOf(preferredJobSubmissionProtocol));
-		computeResourcePreference.setScratchLocation(scratchLocation);
-		return computeResourcePreference;
-	}
-
-	public static ApplicationDeploymentDescription createApplicationDeployment(
-			String computeResourceId, String appModuleId,
-			String executablePath, ApplicationParallelismType parallelism, String appDeploymentDescription) {
-		ApplicationDeploymentDescription deployment = new ApplicationDeploymentDescription();
-//		deployment.setIsEmpty(false);
-		deployment.setAppDeploymentDescription(appDeploymentDescription);
-		deployment.setAppModuleId(appModuleId);
-		deployment.setComputeHostId(computeResourceId);
-		deployment.setExecutablePath(executablePath);
-		deployment.setParallelism(parallelism);
-		return deployment;
-	}
-
-	public static ApplicationModule createApplicationModule(String appModuleName,
-			String appModuleVersion, String appModuleDescription) {
-		ApplicationModule module = new ApplicationModule();
-		module.setAppModuleDescription(appModuleDescription);
-		module.setAppModuleName(appModuleName);
-		module.setAppModuleVersion(appModuleVersion);
-		return module;
-	}
-
-	public static DataMovementInterface createDataMovementInterface(
-			String dataMovementInterfaceId,
-			DataMovementProtocol dataMovementProtocolType, int priorityOrder) {
-		DataMovementInterface dataMovementInterface = new DataMovementInterface();
-		dataMovementInterface.setDataMovementInterfaceId(dataMovementInterfaceId);
-		dataMovementInterface.setDataMovementProtocol(dataMovementProtocolType);
-		dataMovementInterface.setPriorityOrder(priorityOrder);
-		return dataMovementInterface;
-	}
-
-	public static JobSubmissionInterface createJobSubmissionInterface(
-			String jobSubmissionInterfaceId,
-			JobSubmissionProtocol jobSubmissionProtocolType, int priorityOrder) {
-		JobSubmissionInterface jobSubmissionInterface = new JobSubmissionInterface();
-		jobSubmissionInterface.setJobSubmissionInterfaceId(jobSubmissionInterfaceId);
-		jobSubmissionInterface.setJobSubmissionProtocol(jobSubmissionProtocolType);
-		jobSubmissionInterface.setPriorityOrder(priorityOrder);
-		return jobSubmissionInterface;
-	}
-
-	public static ComputeResourceDescription createComputeResourceDescription(
-			String hostName, List<String> hostAliases, List<String> ipAddresses) {
-		ComputeResourceDescription host = new ComputeResourceDescription();
-		host.setHostName(hostName);
-		host.setIpAddresses(ipAddresses);
-		host.setHostAliases(hostAliases);
-		return host;
-	}
-
-	public static ResourceJobManager createResourceJobManager(
-			ResourceJobManagerType resourceJobManagerType,
-			String jobManagerBinPath,
-			Map<JobManagerCommand, String> jobManagerCommands,
-			String pushMonitoringEndpoint) {
-		ResourceJobManager resourceJobManager=new ResourceJobManager();;
-		resourceJobManager.setResourceJobManagerType(resourceJobManagerType);
-		resourceJobManager.setJobManagerBinPath(jobManagerBinPath);
-		resourceJobManager.setJobManagerCommands(jobManagerCommands);
-		resourceJobManager.setPushMonitoringEndpoint(pushMonitoringEndpoint);
-		return resourceJobManager;
-	}
-
-	public static InputDataObjectType createAppInput (String inputName, String argumentName, String description, String value, org.apache.airavata.model.appcatalog.appinterface.DataType type ){
-        InputDataObjectType input = new InputDataObjectType();
-//        input.setIsEmpty(false);
-        if (inputName!=null) {
-			input.setName(inputName);
-		}
-		if (value!=null) {
-			input.setValue(value);
-		}
-		if (type!=null) {
-			input.setType(type);
-		}
-		if (argumentName!=null) {
-			input.setApplicationArgument(argumentName);
-		}
-		if (description!=null) {
-			input.setUserFriendlyDescription(description);
-		}
-		return input;
-    }
-
-    public static OutputDataObjectType createAppOutput (String inputName, String value, org.apache.airavata.model.appcatalog.appinterface.DataType type ){
-        OutputDataObjectType outputDataObjectType = new OutputDataObjectType();
-//        outputDataObjectType.setIsEmpty(false);
-        if (inputName!=null) {
-			outputDataObjectType.setName(inputName);
-		}
-		if (value!=null) {
-			outputDataObjectType.setValue(value);
-		}
-		if (type!=null) {
-			outputDataObjectType.setType(type);
-		}
-		return outputDataObjectType;
-    }
-    
-}

http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/NameValuePairType.java
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/NameValuePairType.java b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/NameValuePairType.java
deleted file mode 100644
index 5bf5cb5..0000000
--- a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/NameValuePairType.java
+++ /dev/null
@@ -1,48 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.client.tools;
-
-public class NameValuePairType {
-	
-	private String name;
-	private String value;
-	private String description;
-	public String getName() {
-		return name;
-	}
-	public void setName(String name) {
-		this.name = name;
-	}
-	public String getValue() {
-		return value;
-	}
-	public void setValue(String value) {
-		this.value = value;
-	}
-	public String getDescription() {
-		return description;
-	}
-	public void setDescription(String description) {
-		this.description = description;
-	}
-
-}

http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/PeriodicExecutorThread.java
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/PeriodicExecutorThread.java b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/PeriodicExecutorThread.java
deleted file mode 100644
index 6a1a4ed..0000000
--- a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/PeriodicExecutorThread.java
+++ /dev/null
@@ -1,61 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-
-package org.apache.airavata.client.tools;
-
-import org.apache.airavata.client.api.AiravataAPI;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-public abstract class PeriodicExecutorThread extends Thread {
-
-    private AiravataAPI airavataAPI;
-    public static final int URL_UPDATE_INTERVAL = 1000 * 60 * 60 * 3;
-    public static final int JCR_AVAIALABILITY_WAIT_INTERVAL = 1000 * 10;
-
-    private static final Logger log = LoggerFactory.getLogger(PeriodicExecutorThread.class);
-
-    public PeriodicExecutorThread(AiravataAPI airavataAPI) {
-        this.airavataAPI = airavataAPI;
-    }
-
-    public void run() {
-        while (true) {
-            try {
-                updateRegistry(airavataAPI);
-                Thread.sleep(URL_UPDATE_INTERVAL);
-            } catch (InterruptedException e) {
-                break;
-            } catch (Exception e) {
-                try {
-                    Thread.sleep(JCR_AVAIALABILITY_WAIT_INTERVAL);
-                } catch (InterruptedException e1) {
-                    e1.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-                    return;
-                }
-                log.error(e.getMessage());
-                log.error("Workflow Interpreter Service URL update thread is interrupted");
-            }
-        }
-    }
-
-    protected abstract void updateRegistry(AiravataAPI airavataAPI) throws Exception;
-}

http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/UltrascanDocumentCreator.java
----------------------------------------------------------------------
diff --git a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/UltrascanDocumentCreator.java b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/UltrascanDocumentCreator.java
deleted file mode 100644
index f4fceeb..0000000
--- a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/UltrascanDocumentCreator.java
+++ /dev/null
@@ -1,444 +0,0 @@
-///**
-// * Licensed to the Apache Software Foundation (ASF) under one
-// * or more contributor license agreements.  See the NOTICE file
-// * distributed with this work for additional information
-// * regarding copyright ownership.  The ASF licenses this file
-// * to you under the Apache License, Version 2.0 (the
-// * "License"); you may not use this file except in compliance
-// * with the License.  You may obtain a copy of the License at
-// *
-// *   http://www.apache.org/licenses/LICENSE-2.0
-// *
-// * Unless required by applicable law or agreed to in writing,
-// * software distributed under the License is distributed on an
-// * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-// * KIND, either express or implied.  See the License for the
-// * specific language governing permissions and limitations
-// * under the License.
-// */
-//
-//package org.apache.airavata.client.tools;
-//
-//import java.io.File;
-//import java.util.ArrayList;
-//import java.util.Date;
-//import java.util.List;
-//import java.util.UUID;
-//
-//import org.apache.airavata.client.api.AiravataAPI;
-//import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
-//import org.apache.airavata.commons.gfac.type.ApplicationDescription;
-//import org.apache.airavata.commons.gfac.type.HostDescription;
-//import org.apache.airavata.commons.gfac.type.ServiceDescription;
-//import org.apache.airavata.schemas.gfac.ApplicationDeploymentDescriptionType;
-//import org.apache.airavata.schemas.gfac.DataType;
-//import org.apache.airavata.schemas.gfac.GsisshHostType;
-//import org.apache.airavata.schemas.gfac.HpcApplicationDeploymentType;
-//import org.apache.airavata.schemas.gfac.InputParameterType;
-//import org.apache.airavata.schemas.gfac.JobTypeType;
-//import org.apache.airavata.schemas.gfac.OutputParameterType;
-//import org.apache.airavata.schemas.gfac.ParameterType;
-//import org.apache.airavata.schemas.gfac.ProjectAccountType;
-//import org.apache.airavata.schemas.gfac.QueueType;
-//
-//public class UltrascanDocumentCreator {
-//
-//	private AiravataAPI airavataAPI = null;
-//    private String hpcHostAddress = "trestles.sdsc.edu";
-//    private String gsiSshHostNameTrestles = "gsissh-trestles";
-//    private String gsiSshHostNameStampede = "gsissh-stampede";
-//
-//
-//    public UltrascanDocumentCreator(AiravataAPI airavataAPI) {
-//        this.airavataAPI = airavataAPI;
-//    }
-//
-//    public void createEchoPBSDocsforTestles() {
-//        HostDescription host = new HostDescription(GsisshHostType.type);
-//        host.getType().setHostAddress(hpcHostAddress);
-//        host.getType().setHostName(gsiSshHostNameTrestles);
-//        ((GsisshHostType) host.getType()).setPort(22);
-//        ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveHostDescription(host);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//        /*
-//        * Service Description creation and saving
-//        */
-//        String serviceName = "US3EchoTrestles";
-//        ServiceDescription serv = new ServiceDescription();
-//        serv.getType().setName(serviceName);
-//
-//        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
-//        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
-//
-//
-//        InputParameterType input = InputParameterType.Factory.newInstance();
-//        input.setParameterName("echo_input");
-//        ParameterType parameterType = input.addNewParameterType();
-//        parameterType.setType(DataType.STRING);
-//        parameterType.setName("String");
-//
-//        OutputParameterType output = OutputParameterType.Factory.newInstance();
-//        output.setParameterName("echo_output");
-//        ParameterType parameterType1 = output.addNewParameterType();
-//        parameterType1.setType(DataType.STRING);
-//        parameterType1.setName("String");
-//
-//        inputList.add(input);
-//        outputList.add(output);
-//
-//        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
-//        OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
-//
-//        serv.getType().setInputParametersArray(inputParamList);
-//        serv.getType().setOutputParametersArray(outputParamList);
-//        try {
-//            airavataAPI.getApplicationManager().saveServiceDescription(serv);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//
-//        /*
-//            Application descriptor creation and saving
-//         */
-//        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
-//        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
-//        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-//        name.setStringValue(serviceName);
-//        app.setApplicationName(name);
-//        ProjectAccountType projectAccountType = app.addNewProjectAccount();
-//        projectAccountType.setProjectAccountNumber("uot111");
-//
-//        QueueType queueType = app.addNewQueue();
-//        queueType.setQueueName("normal");
-//
-//        app.setCpuCount(1);
-//        app.setJobType(JobTypeType.SERIAL);
-//        app.setNodeCount(1);
-//        app.setProcessorsPerNode(1);
-//        app.setMaxWallTime(10);
-//        /*
-//           * Use bat file if it is compiled on Windows
-//           */
-//        app.setExecutableLocation("/bin/echo");
-//
-//        /*
-//           * Default tmp location
-//           */
-//        String tempDir = "/oasis/projects/nsf/uot111/us3/airavata-workdirs/";
-//
-//        app.setScratchWorkingDirectory(tempDir);
-//        app.setInstalledParentPath("/opt/torque/bin/");
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameTrestles, appDesc);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//    }
-//
-//    public void createMPIPBSDocsTrestles() {
-//        HostDescription host = new HostDescription(GsisshHostType.type);
-//        host.getType().setHostAddress(hpcHostAddress);
-//        host.getType().setHostName(gsiSshHostNameTrestles);
-//        ((GsisshHostType) host.getType()).setPort(22);
-//        ((GsisshHostType) host.getType()).setInstalledPath("/opt/torque/bin/");
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveHostDescription(host);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//        /*
-//        * Service Description creation and saving
-//        */
-//        String serviceName = "US3AppTrestles";
-//        ServiceDescription serv = new ServiceDescription();
-//        serv.getType().setName(serviceName);
-//
-//        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
-//        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
-//
-//
-//        InputParameterType input = InputParameterType.Factory.newInstance();
-//        input.setParameterName("input");
-//        ParameterType parameterType = input.addNewParameterType();
-//        parameterType.setType(DataType.URI);
-//        parameterType.setName("URI");
-//
-//        OutputParameterType output = OutputParameterType.Factory.newInstance();
-//        output.setParameterName("output");
-//        ParameterType parameterType1 = output.addNewParameterType();
-//        parameterType1.setType(DataType.URI);
-//        parameterType1.setName("URI");
-//
-//        OutputParameterType output1 = OutputParameterType.Factory.newInstance();
-//        output1.setParameterName("stdout");
-//        ParameterType parameterType2 = output1.addNewParameterType();
-//        parameterType2.setType(DataType.STD_OUT);
-//        parameterType2.setName("StdOut");
-//
-//        OutputParameterType output2 = OutputParameterType.Factory.newInstance();
-//        output2.setParameterName("stderr");
-//        ParameterType parameterType3 = output2.addNewParameterType();
-//        parameterType3.setType(DataType.STD_ERR);
-//        parameterType3.setName("StdErr");
-//
-//        inputList.add(input);
-//        outputList.add(output);
-//        outputList.add(output1);
-//        outputList.add(output2);
-//
-//        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
-//        OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
-//
-//        serv.getType().setInputParametersArray(inputParamList);
-//        serv.getType().setOutputParametersArray(outputParamList);
-//        try {
-//            airavataAPI.getApplicationManager().saveServiceDescription(serv);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//
-//        /*
-//            Application descriptor creation and saving
-//         */
-//        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
-//        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
-//        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-//        name.setStringValue(serviceName);
-//        app.setApplicationName(name);
-//        ProjectAccountType projectAccountType = app.addNewProjectAccount();
-//        projectAccountType.setProjectAccountNumber("uot111");
-//
-//        QueueType queueType = app.addNewQueue();
-//        queueType.setQueueName("normal");
-//
-//        app.setCpuCount(1);
-//        app.setJobType(JobTypeType.MPI);
-//        app.setNodeCount(32);
-//        app.setProcessorsPerNode(2);
-//        app.setMaxWallTime(10);
-//        /*
-//           * Use bat file if it is compiled on Windows
-//           */
-//        app.setExecutableLocation("/home/us3/trestles/bin/us_mpi_analysis");
-//
-//        /*
-//           * Default tmp location
-//           */
-//        String tempDir = "/oasis/projects/nsf/uot111/us3/airavata-workdirs/";
-//        app.setScratchWorkingDirectory(tempDir);
-//        app.setInstalledParentPath("/opt/torque/bin/");
-//        app.setJobSubmitterCommand("/opt/mvapich2/pgi/ib/bin/mpiexec");
-//        try {
-//            airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameTrestles, appDesc);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//    }
-//    public void createMPISLURMDocsStampede() {
-//        HostDescription host = new HostDescription(GsisshHostType.type);
-//        host.getType().setHostAddress("stampede.tacc.xsede.org");
-//        host.getType().setHostName("gsissh-stampede");
-//        ((GsisshHostType) host.getType()).setJobManager("slurm");
-//        ((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
-//        ((GsisshHostType) host.getType()).setPort(2222);
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveHostDescription(host);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//        /*
-//        * Service Description creation and saving
-//        */
-//        String serviceName = "US3AppStampede";
-//        ServiceDescription serv = new ServiceDescription();
-//        serv.getType().setName(serviceName);
-//
-//        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
-//        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
-//
-//
-//        InputParameterType input = InputParameterType.Factory.newInstance();
-//        input.setParameterName("input");
-//        ParameterType parameterType = input.addNewParameterType();
-//        parameterType.setType(DataType.URI);
-//        parameterType.setName("URI");
-//
-//        OutputParameterType output = OutputParameterType.Factory.newInstance();
-//        output.setParameterName("output");
-//        ParameterType parameterType1 = output.addNewParameterType();
-//        parameterType1.setType(DataType.URI);
-//        parameterType1.setName("URI");
-//
-//        OutputParameterType output1 = OutputParameterType.Factory.newInstance();
-//        output1.setParameterName("stdout");
-//        ParameterType parameterType2 = output1.addNewParameterType();
-//        parameterType2.setType(DataType.STD_OUT);
-//        parameterType2.setName("StdOut");
-//
-//        OutputParameterType output2 = OutputParameterType.Factory.newInstance();
-//        output2.setParameterName("stderr");
-//        ParameterType parameterType3 = output2.addNewParameterType();
-//        parameterType3.setType(DataType.STD_ERR);
-//        parameterType3.setName("StdErr");
-//
-//        inputList.add(input);
-//        outputList.add(output);
-//        outputList.add(output1);
-//        outputList.add(output2);
-//
-//        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
-//        OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
-//
-//        serv.getType().setInputParametersArray(inputParamList);
-//        serv.getType().setOutputParametersArray(outputParamList);
-//        try {
-//            airavataAPI.getApplicationManager().saveServiceDescription(serv);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//
-//        /*
-//            Application descriptor creation and saving
-//         */
-//        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
-//        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
-//        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-//        name.setStringValue(serviceName);
-//        app.setApplicationName(name);
-//        ProjectAccountType projectAccountType = app.addNewProjectAccount();
-//        projectAccountType.setProjectAccountNumber("TG-MCB070039N");
-//
-//        QueueType queueType = app.addNewQueue();
-//        queueType.setQueueName("normal");
-//
-//        app.setCpuCount(1);
-//        app.setJobType(JobTypeType.MPI);
-//        app.setNodeCount(32);
-//        app.setProcessorsPerNode(2);
-//        app.setMaxWallTime(10);
-//        /*
-//           * Use bat file if it is compiled on Windows
-//           */
-//        app.setExecutableLocation("/home1/01623/us3/bin/us_mpi_analysis");
-//
-//        /*
-//           * Default tmp location
-//           */
-//        String tempDir = "/home1/01623/us3";
-//        app.setScratchWorkingDirectory(tempDir);
-//        app.setInstalledParentPath("/usr/bin/");
-//        app.setJobSubmitterCommand("/usr/local/bin/ibrun");
-//        try {
-//            airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameStampede, appDesc);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//    }
-//    public void createEchoSlurmDocsofStampede() {
-//        HostDescription host = new HostDescription(GsisshHostType.type);
-//        host.getType().setHostAddress("stampede.tacc.xsede.org");
-//        host.getType().setHostName("stampede-host");
-//        ((GsisshHostType) host.getType()).setJobManager("slurm");
-//        ((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
-//        ((GsisshHostType) host.getType()).setPort(2222);
-//        ((GsisshHostType) host.getType()).setMonitorMode("push");
-////        ((GsisshHostType) host.getType()).setMo(2222);
-//
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveHostDescription(host);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//        /*
-//        * Service Description creation and saving
-//        */
-//        String serviceName = "US3EchoStampede";
-//        ServiceDescription serv = new ServiceDescription();
-//        serv.getType().setName(serviceName);
-//
-//        List<InputParameterType> inputList = new ArrayList<InputParameterType>();
-//        List<OutputParameterType> outputList = new ArrayList<OutputParameterType>();
-//
-//
-//        InputParameterType input = InputParameterType.Factory.newInstance();
-//        input.setParameterName("echo_input");
-//        ParameterType parameterType = input.addNewParameterType();
-//        parameterType.setType(DataType.STRING);
-//        parameterType.setName("String");
-//
-//        OutputParameterType output = OutputParameterType.Factory.newInstance();
-//        output.setParameterName("echo_output");
-//        ParameterType parameterType1 = output.addNewParameterType();
-//        parameterType1.setType(DataType.STRING);
-//        parameterType1.setName("String");
-//
-//        inputList.add(input);
-//        outputList.add(output);
-//
-//        InputParameterType[] inputParamList = inputList.toArray(new InputParameterType[inputList.size()]);
-//        OutputParameterType[] outputParamList = outputList.toArray(new OutputParameterType[outputList.size()]);
-//
-//        serv.getType().setInputParametersArray(inputParamList);
-//        serv.getType().setOutputParametersArray(outputParamList);
-//        try {
-//            airavataAPI.getApplicationManager().saveServiceDescription(serv);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//
-//        /*
-//           Application descriptor creation and saving
-//        */
-//        ApplicationDescription appDesc = new ApplicationDescription(HpcApplicationDeploymentType.type);
-//        HpcApplicationDeploymentType app = (HpcApplicationDeploymentType) appDesc.getType();
-//        ApplicationDeploymentDescriptionType.ApplicationName name = ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-//        name.setStringValue(serviceName);
-//        app.setApplicationName(name);
-//        ProjectAccountType projectAccountType = app.addNewProjectAccount();
-//        projectAccountType.setProjectAccountNumber("TG-MCB070039N");
-//
-//        QueueType queueType = app.addNewQueue();
-//        queueType.setQueueName("normal");
-//
-//        app.setCpuCount(1);
-//        app.setJobType(JobTypeType.SERIAL);
-//        app.setNodeCount(1);
-//        app.setProcessorsPerNode(1);
-//        app.setMaxWallTime(10);
-//        /*
-//        * Use bat file if it is compiled on Windows
-//        */
-//        app.setExecutableLocation("/bin/echo");
-//
-//        /*
-//        * Default tmp location
-//        */
-//        String tempDir = "/home1/01623/us3";
-//
-//        app.setScratchWorkingDirectory(tempDir);
-//        app.setInstalledParentPath("/usr/bin/");
-//
-//        try {
-//            airavataAPI.getApplicationManager().saveApplicationDescription(serviceName, gsiSshHostNameStampede, appDesc);
-//        } catch (AiravataAPIInvocationException e) {
-//            e.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
-//        }
-//    }
-//
-//    public AiravataAPI getAiravataAPI() {
-//        return airavataAPI;
-//    }
-//
-//    public void setAiravataAPI(AiravataAPI airavataAPI) {
-//        this.airavataAPI = airavataAPI;
-//    }
-//}