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Posted to commits@ctakes.apache.org by ch...@apache.org on 2014/11/07 22:56:45 UTC
svn commit: r1637466 [10/14] -
/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/
Modified: ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml?rev=1637466&r1=1637465&r2=1637466&view=diff
==============================================================================
--- ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml (original)
+++ ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml Fri Nov 7 21:56:44 2014
@@ -1,416 +1,59 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<CAS version="2">
- <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="S/P right knee arthroscopy. Knee x-ray. Patient denies knee pain. "/>
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- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="242" key="Sest" posTag="RB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="239" key="Sest" posTag="JJ"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="236" key="Ser" posTag="RB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="233" key="Ser" posTag="JJ"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="230" key="S" posTag="NN"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="227" key="S" posTag="RB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="224" key="S" posTag="JJ"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="221" key="S" posTag="VB"/>
- <org.apache.ctakes.typesystem.type.syntax.Lemma _id="218" key="Sing" posTag="VB"/>
-</CAS>
+<?xml version="1.0" encoding="UTF-8"?><CAS version="2">
+ <uima.cas.Sofa _indexed="0" _id="3" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="S/P right knee arthroscopy. Knee x-ray. Patient denies knee pain. "/>
+ <org.apache.ctakes.typesystem.type.structured.DocumentID _indexed="1" _id="1" documentID="sample_note_plaintext"/>
+ <uima.tcas.DocumentAnnotation _indexed="1" _id="10" _ref_sofa="3" begin="0" end="67" language="x-unspecified"/>
+ <org.apache.ctakes.typesystem.type.textspan.Segment _indexed="1" _id="15" _ref_sofa="3" begin="0" end="67" id="SIMPLE_SEGMENT"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="21" _ref_sofa="3" begin="0" end="27" sentenceNumber="0"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="27" _ref_sofa="3" begin="28" end="39" sentenceNumber="1"/>
+ <org.apache.ctakes.typesystem.type.textspan.Sentence _indexed="1" _id="33" _ref_sofa="3" begin="41" end="66" sentenceNumber="2"/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="39" _ref_sofa="3" begin="27" end="28" tokenNumber="7" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.NewlineToken _indexed="1" _id="47" _ref_sofa="3" begin="66" end="67" tokenNumber="16" normalizedForm=" "/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="55" _ref_sofa="3" begin="0" end="1" tokenNumber="0" normalizedForm="s" partOfSpeech="NN" capitalization="3" numPosition="0" canonicalForm="s"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="75" _ref_sofa="3" begin="2" end="3" tokenNumber="2" normalizedForm="p" partOfSpeech="IN" capitalization="3" numPosition="0" canonicalForm="p"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="87" _ref_sofa="3" begin="4" end="9" tokenNumber="3" normalizedForm="right" partOfSpeech="JJ" capitalization="0" numPosition="0" canonicalForm="right"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="99" _ref_sofa="3" begin="10" end="14" tokenNumber="4" normalizedForm="knee" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="knee"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="111" _ref_sofa="3" begin="15" end="26" tokenNumber="5" normalizedForm="arthroscopy" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="arthroscopy"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="131" _ref_sofa="3" begin="28" end="32" tokenNumber="8" normalizedForm="knee" partOfSpeech="NN" capitalization="1" numPosition="0" canonicalForm="knee"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="143" _ref_sofa="3" begin="33" end="38" tokenNumber="9" normalizedForm="x-ray" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="x-ray"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="163" _ref_sofa="3" begin="41" end="48" tokenNumber="11" normalizedForm="patient" partOfSpeech="NN" capitalization="1" numPosition="0" canonicalForm="patient"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="175" _ref_sofa="3" begin="49" end="55" tokenNumber="12" normalizedForm="denie" partOfSpeech="VBZ" capitalization="0" numPosition="0" canonicalForm="denie"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="187" _ref_sofa="3" begin="56" end="60" tokenNumber="13" normalizedForm="knee" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="knee"/>
+ <org.apache.ctakes.typesystem.type.syntax.WordToken _indexed="1" _id="199" _ref_sofa="3" begin="61" end="65" tokenNumber="14" normalizedForm="pain" partOfSpeech="NN" capitalization="0" numPosition="0" canonicalForm="pain"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="67" _ref_sofa="3" begin="1" end="2" tokenNumber="1" normalizedForm="/" partOfSpeech="HYPH"/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="123" _ref_sofa="3" begin="26" end="27" tokenNumber="6" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="155" _ref_sofa="3" begin="38" end="39" tokenNumber="10" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.PunctuationToken _indexed="1" _id="211" _ref_sofa="3" begin="65" end="66" tokenNumber="15" normalizedForm="." partOfSpeech="."/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="219" _ref_sofa="3" begin="0" end="1" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="234" _ref_sofa="3" begin="4" end="26" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="239" _ref_sofa="3" begin="28" end="38" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="244" _ref_sofa="3" begin="41" end="48" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.NP _indexed="1" _id="254" _ref_sofa="3" begin="56" end="65" chunkType="NP"/>
+ <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="224" _ref_sofa="3" begin="1" end="2" chunkType="VP"/>
+ <org.apache.ctakes.typesystem.type.syntax.VP _indexed="1" _id="249" _ref_sofa="3" begin="49" end="55" chunkType="VP"/>
+ <org.apache.ctakes.typesystem.type.syntax.PP _indexed="1" _id="229" _ref_sofa="3" begin="2" end="3" chunkType="PP"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="259" _ref_sofa="3" begin="0" end="1"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="263" _ref_sofa="3" begin="4" end="26"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="267" _ref_sofa="3" begin="28" end="38"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="271" _ref_sofa="3" begin="41" end="48"/>
+ <org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation _indexed="1" _id="275" _ref_sofa="3" begin="56" end="65"/>
+ <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _indexed="1" _id="292" _ref_sofa="3" begin="10" end="14" id="0" _ref_ontologyConceptArr="289" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _indexed="1" _id="326" _ref_sofa="3" begin="28" end="32" id="1" _ref_ontologyConceptArr="323" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _indexed="1" _id="403" _ref_sofa="3" begin="56" end="60" id="2" _ref_ontologyConceptArr="400" typeID="6" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _indexed="1" _id="360" _ref_sofa="3" begin="61" end="65" id="3" _ref_ontologyConceptArr="357" typeID="3" segmentID="SIMPLE_SEGMENT" discoveryTechnique="1" confidence="0.0" polarity="1" uncertainty="0" conditional="false" generic="false" subject="patient" historyOf="0"/>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="347" codingScheme="SNOMED" code="100206" oid="100206#SNOMED" score="0.0" disambiguated="false" cui="Cui0206" tui="T_SS"/>
+ <uima.cas.FSArray _id="357" size="1">
+ <i>347</i>
+ </uima.cas.FSArray>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="390" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" score="0.0" disambiguated="false" cui="Cui0002" tui="T_AS"/>
+ <uima.cas.FSArray _id="400" size="1">
+ <i>390</i>
+ </uima.cas.FSArray>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="313" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" score="0.0" disambiguated="false" cui="Cui0002" tui="T_AS"/>
+ <uima.cas.FSArray _id="323" size="1">
+ <i>313</i>
+ </uima.cas.FSArray>
+ <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="279" codingScheme="SNOMED" code="100002" oid="100002#SNOMED" score="0.0" disambiguated="false" cui="Cui0002" tui="T_AS"/>
+ <uima.cas.FSArray _id="289" size="1">
+ <i>279</i>
+ </uima.cas.FSArray>
+</CAS>