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Posted to commits@taverna.apache.org by bu...@apache.org on 2016/01/21 00:35:36 UTC
svn commit: r978173 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/community/publications.html
Author: buildbot
Date: Wed Jan 20 23:35:36 2016
New Revision: 978173
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/community/publications.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
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+++ websites/staging/taverna/trunk/content/community/publications.html Wed Jan 20 23:35:36 2016
@@ -0,0 +1,421 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - </title>
+
+ <meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+ <meta property="og:image" content="/img/taverna-logo-145x134.png" />
+
+ <link rel="shortcut icon" href="/favicon.ico">
+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
+ <link rel="stylesheet" href="/css/sticky-footer-navbar.css">
+ <link rel="stylesheet" href="/css/taverna.css">
+ <link rel="stylesheet" href="/css/pygments.css">
+
+
+
+
+ <!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at . http://www.apache.org/licenses/LICENSE-2.0 . Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. -->
+
+ <!-- JSON-LD markup for Google Structured Data -->
+
+ <!-- generic JSON-LD for this page -->
+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+
+ <body>
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default no-margin-bottom" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed no-margin-bottom" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li class="dropdown">
+ <a href="/introduction" data-toggle="dropdown" role="button" aria-expanded="false">Introduction<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/introduction">Introduction home</a></li>
+ <li><a href="/introduction/taverna-features">Taverna features</a></li>
+ <li><a href="/introduction/why-use-workflows">Why use workflows?</a></li>
+ <li><a href="/introduction/what-is-in-silico-experimentation">What is âin silicoâ experimentation?</a></li>
+ <li><a href="/introduction/what-is-a-workflow-management-system">What is a Workflow Management System?</a></li>
+ <li><a href="/introduction/how-can-taverna-help-me">How can Taverna help me?</a></li>
+ <li><a href="/introduction/services-in-taverna">Services in Taverna</a></li>
+ <li><a href="/introduction/related-projects">Related projects</a></li>
+ <li><a href="/introduction/chemistry-web-services">Chemistry-web-services</a></li>
+ <li><a href="/introduction/taverna-in-use">Taverna in use</a></li>
+ <li><a href="/introduction/works-with">Works with...</a></li>
+ <li><a href="/introduction/roadmap">Road Map</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/documentation" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Documentation<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/documentation">Documentation home</a></li>
+ <li><a href="/documentation/glossary">Glossary</a></li>
+ <li><a href="/documentation/quick-start-guide">Quick start guide</a></li>
+ <li><a href="/documentation/scufl2">Taverna's SCUFL2 Language</a></li>
+ <li><a href="/documentation/components">Components</a></li>
+ <li><a href="/documentation/interaction">Interactions</a></li>
+ <li><a href="/documentation/tutorials">Tutorials</a></li>
+ <li><a href="/documentation/videos">Videos</a></li>
+ <li><a href="/documentation/example-workflows">Example workflows</a></li>
+ <li><a href="/documentation/service-sets">Service sets</a></li>
+ <li><a href="/documentation/provenance">Provenance management</a></li>
+ <li><a href="/documentation/command-line">Command Line</a></li>
+ <li><a href="/documentation/server">Taverna Server</a></li>
+ <li><a href="/documentation/taverna-player">Taverna Player</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/documentation/training-and-workshops">Training and workshops</a></li>
+ <li><a href="/documentation/web-service-developers">Web service developers</a></li>
+ <li><a href="/documentation/#tools">Tools and Services</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/download" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Download<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/download">Which Taverna to use</a></li>
+ <li><a href="/download/workbench">TavernaWorkbench</a></li>
+ <li><a href="/download/language">Taverna Language</a></li>
+ <li><a href="/download/command-line-tool">Taverna Command Line</a></li>
+ <li><a href="/download/server">Taverna Server</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/download/code">Source Code</a></li>
+ <li><a href="/download/maven">Maven Repository</a></li>
+ <li><a href="/download/system-requirements">System Requirements</a></li>
+ <li><a href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/community" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Community<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/community">Community home</a></li>
+ <li><a href="/community/lists">Mailing Lists</a></li>
+ <li><a href="/community#contribute">Contribute</a></li>
+ <li><a href="/community/releasing">Release procedure</a></li>
+ <li><a href="/community#reportbugs">Report a Bug</a></li>
+ <li><a href="/community/news">News</a></li>
+ <li><a href="/community/publications">Publications</a></li>
+ <li><a href="/community/references">References</a></li>
+ <li><a href="/community/irc">IRC chat</a></li>
+ </ul>
+ </li>
+ </ul>
+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
+ <div class="form-group input-group">
+ <input type="text" name="q" id="query" placeholder="Search" class="form-control">
+ <span class="input-group-btn">
+ <button type="submit" class="btn btn-default">Search</button>
+ </span>
+ </div>
+ </form>
+ <ul class="nav navbar-nav navbar-right">
+ <li class="dropdown">
+ <a href="http://www.apache.org/" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">ASF<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="http://www.apache.org/">Apache Software Foundation</a></li>
+ <li><a href="http://www.apache.org/foundation/how-it-works.html">How it works</a></li>
+ <li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+ <li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+ <li><a href="http://incubator.apache.org/projects/taverna.html">Taverna Incubation Status</a></li>
+ </ul>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div><!--/.container-->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1></h1>
+ <div id="content"><style type="text/css">
+/* The following code is added by mdx_elementid.py
+ It was originally lifted from http://subversion.apache.org/style/site.css */
+/*
+ * Hide class="elementid-permalink", except when an enclosing heading
+ * has the :hover property.
+ */
+.headerlink, .elementid-permalink {
+ visibility: hidden;
+}
+h2:hover > .headerlink, h3:hover > .headerlink, h1:hover > .headerlink, h6:hover > .headerlink, h4:hover > .headerlink, h5:hover > .headerlink, dt:hover > .elementid-permalink { visibility: visible }</style>
+<h1 id="publications-about-taverna">Publications About Taverna<a class="headerlink" href="#publications-about-taverna" title="Permanent link">¶</a></h1>
+<h2 id="citing-taverna">Citing Taverna<a class="headerlink" href="#citing-taverna" title="Permanent link">¶</a></h2>
+<h3 id="cite-taverna-in-a-paper">Cite Taverna in a paper<a class="headerlink" href="#cite-taverna-in-a-paper" title="Permanent link">¶</a></h3>
+<p>To reference Taverna in a paper, please use:</p>
+<p>Katherine Wolstencroft, Robert Haines, Donal Fellows, Alan Williams, David Withers, Stuart Owen, Stian Soiland-Reyes, Ian Dunlop, Aleksandra Nenadic, Paul Fisher, Jiten Bhagat, Khalid Belhajjame, Finn Bacall, Alex Hardisty, Abraham Nieva de la Hidalga, Maria P. Balcazar Vargas, Shoaib Sufi, Carole Goble. (2013).
+<a href="http://nar.oxfordjournals.org/content/41/W1/W557"><strong>The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.</strong></a>
+In: <em>Nucleic Acids Research</em>, 41(W1): W557–W561.
+<a href="http://dx.doi.org/10.1093/nar/gkt328">doi:10.1093/nar/gkt328</a></p>
+<h3 id="cite-the-apache-taverna-website">Cite the Apache Taverna Website<a class="headerlink" href="#cite-the-apache-taverna-website" title="Permanent link">¶</a></h3>
+<p>To reference the Taverna web site, please use <a href="http://taverna.incubator.apache.org/"><strong>http://taverna.incubator.apache.org/</strong></a></p>
+<h2 id="publications">Publications<a class="headerlink" href="#publications" title="Permanent link">¶</a></h2>
+<p><em>These publications describe or experiment with Taverna.</em></p>
+<h3 id="2014">2014<a class="headerlink" href="#2014" title="Permanent link">¶</a></h3>
+<p>Sarah Cohen-Boulakia, Jiuqiang Chen, Paolo Missier, Carole A. Goble, Alan R. Williams, Christine Froidevaux. (2014).
+<strong>Distilling structure in Taverna scientific workflows: a refactoring approach.</strong>
+In: <em>BMC Bioinformatics</em>, 15(suppl 1).
+<a href="http://dx.doi.org/10.1186/1471-2105-15-S1-S12">doi:10.1186/1471-2105-15-S1-S12</a></p>
+<!---
+The above link is broken as of 1/20/16; it worked on 1/18/16. GN
+--->
+
+<h3 id="2013">2013<a class="headerlink" href="#2013" title="Permanent link">¶</a></h3>
+<p>Anja Le Blanc, John Brooke, Donal Fellows, Marco Soldati, David Pérez-Suárez, Alessandro Marassi, Andrej Santin. (2013).
+<strong>Workflows for heliophysics.</strong>
+In: <em>Journal of Grid Computing</em>, 11(3): 481–503. <a href="http://dx.doi.org/10.1007/s10723-013-9256-5">doi:10.1007/s10723-013-9256-5</a>
+<a href="https://www.researchgate.net/publication/236683534_Workflows_for_Heliophysics">[researchgate]</a></p>
+<p>Katherine Wolstencroft, Robert Haines, Donal Fellows, Alan Williams, David Withers, Stuart Owen, Stian Soiland-Reyes, Ian Dunlop, Aleksandra Nenadic, Paul Fisher, Jiten Bhagat, Khalid Belhajjame, Finn Bacall, Alex Hardisty, Abraham Nieva de la Hidalga, Maria P. Balcazar Vargas, Shoaib Sufi, Carole Goble. (2013).
+<strong>The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.</strong>
+In: <em>Nucleic Acids Research</em>, 41(W1): W557–W561.
+<a href="http://dx.doi.org/10.1093/nar/gkt328">doi:10.1093/nar/gkt328</a></p>
+<p>Hyde Zhang, Stian Soiland-Reyes, Carole Goble. (2013).
+<strong>Taverna Mobile: Taverna workflows on Android.</strong>
+In: <em>EMBnet.journal</em>, 19(B).
+<a href="http://dx.doi.org/10.14806/ej.19.B.727">doi:10.14806/ej.19.B.727</a> <a href="http://journal.embnet.org/index.php/embnetjournal/article/view/727/1047">[pdf]</a></p>
+<h2 id="2012">2012<a class="headerlink" href="#2012" title="Permanent link">¶</a></h2>
+<p>Konstantinos Karasavvas, Katy Wolstencroft, Eleni Mina, Don Cruickshank, Alan Williams, David De Roure, Carole Goble, Marcos Roos. (2012).
+<strong>"Opening new gateways to workflows for life scientists,"</strong>
+in <em>Studies in Health Technology and Informatics (Series): Volume 175: HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences (EBook).</em> IOS Press, p. 131–141.
+<a href="http://dx.doi.org/10.3233/978-1-61499-054-3-131">doi:10.3233/978-1-61499-054-3-131</a></p>
+<p>Jun Zhao, Jose Manuel Gomez-Perez, Khalid Belhajjame, Graham Klyne, Esteban Garcia-Cuestay, Aleix Garridoy, Kristina Hettne, Marco Roos, David De Roure, Carole Goble. (2012).
+<strong>"Why workflows break — Understanding and combating decay in Taverna workflows,"</strong>
+in <em>E-Science (e-Science), 2012 IEEE 8th International Conference on</em>, 8-12 Oct 2012: 1–9.
+<a href="http:dx.doi.org/10.1109/eScience.2012.6404482">doi:10.1109/eScience.2012.6404482</a>
+<a href="http://users.ox.ac.uk/~oerc0033/preprints/why-decay.pdf">[preprint]</a></p>
+<h2 id="2011">2011<a class="headerlink" href="#2011" title="Permanent link">¶</a></h2>
+<p>K. Belhajjame, C. Goble, S. Soiland-Reyes, D. De Roure. (2011).
+<strong>"Fostering Scientific Workflow Preservation through Discovery of Substitute Services,"</strong>
+in <em>E-Science (e-Science), 2011 IEEE 7th International Conference on</em>: 97–104.
+<a href="http://dx.doi.org/10.1109/eScience.2011.22">doi:10.1109/eScience.2011.22</a></p>
+<p>Paolo Missier, Carole Goble. (2011).
+<strong>Workflows to open provenance graphs, round-trip.</strong>
+In: <em>Future Generation Computer Systems</em>, 27(6): 812–819. <a href="http://dx.doi.org/10.1016/j.future.2010.10.012">doi:10.1016/j.future.2010.10.012</a></p>
+<h2 id="2010">2010<a class="headerlink" href="#2010" title="Permanent link">¶</a></h2>
+<p>Paolo Missier, Satya Sahoo, Jun Zhao, Carole Goble, Amit Sheth. (2010)
+<strong>"Janus: from Workflows to Semantic Provenance and Linked Open Data,"</strong>
+in <em>Provenance and Annotation of Data and Processes, Third International Provenance and Annotation Workshop, (IPAW'10)</em>, 15–16 Jun 2010. Springer, Berlin: 129–141. <a href="http://dx.doi.org/10.1007/978-3-642-17819-1_16">doi:10.1007/978-3-642-17819-1_16</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:108342">[escholar]</a></p>
+<p>Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Wei Tan, Alexandra Nenadic, Ian Dunlop, Alan Williams, Tom Oinn, Carole Goble. (2010), <strong>"Taverna, reloaded,"</strong>
+in <em>Scientific and Statistical Database Management, 22nd International Conference (SSDBM 2010)</em>, 30 Jun–02 Jul 2010, Springer, Berlin: 471–481. <a href="http://dx.doi.org/10.1007/978-3-642-13818-8_33">doi:10.1007/978-3-642-13818-8_33</a> </p>
+<p>S. Moeller, H. Krabbenhoeft, A. Tille, D. Paleino, A. Williams, K. Wolstencroft, C. Goble, C. Plessy. (2010).
+ <strong>"Community-driven computational biology with Debian and Taverna,"</strong>
+in <em>BOSC 2010</em>. </p>
+<p>Wei Tan, Ravi Madduri, Alexandra Nenadic, Stian Soiland-Reyes, Dinanth Sulakhe, Ian Foster, Carole A. Goble. (2010).
+<strong>CaGrid Workflow Toolkit: A Taverna based workflow tool for cancer grid.</strong>
+In: <em>BMC Bioinformatics</em>, 11: 542.
+<a href="http://dx.doi.org/10.1186/1471-2105-11-542">doi:10.1186/1471-2105-11-542</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:108292">[escholar]</a></p>
+<p>Wei Tan, Paolo Missier, Ian Foster, Ravi Madduri, David De Roure, Carole Goble. (2010).
+<strong>A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid.</strong>
+In: <em>Concurrency and Computation: Practice and Experience</em>. 22(9): 1098–1117.
+<a href="http://dx.doi.org/10.1002/cpe.1547">doi:10.1002/cpe.1547</a></p>
+<h2 id="2009">2009<a class="headerlink" href="#2009" title="Permanent link">¶</a></h2>
+<p>Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole Goble, Kahlid Belhajjame, Paolo Missier. (2009).
+<strong>The data playground: An intuitive workflow specification environment.</strong>
+In: <em>Future Generation Computer Systems</em>. 25(4): 453–459.
+<a href="http://dx.doi.org/10.1016/j.future.2008.09.009">doi:10.1016/j.future.2008.09.009</a></p>
+<p>Jacek Sroka, Jan Hidders, Paolo Missier, Carole Goble. (2009).
+<strong>A formal semantics for the Taverna 2 workflow model.</strong>
+In: <em>Journal of Computer and System Sciences</em>. 76(6): 490–508.
+<a href="http://dx.doi.org/10.1016/j.jcss.2009.11.009">doi:10.1016/j.jcss.2009.11.009</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:108316">[escholar]</a></p>
+<h2 id="2008">2008<a class="headerlink" href="#2008" title="Permanent link">¶</a></h2>
+<p>K. Belhajjame, K. Wolstencroft, O. Corcho, T. Oinn, F. Tanoh, A. Williams, C. Goble. (2008).
+<strong>"Metadata Management in the Taverna Workflow System,"</strong>
+in <em>Cluster Computing and the Grid, 8th IEEE International Symposium on (CCGRID'08)</em>, 19-22 May 2008: 651–656.
+<a href="http://dx.doi.org/10.1109/CCGRID.2008.17">doi:10.1109/CCGRID.2008.17</a></p>
+<p>Anders Lanzén, Tom Oinn. (2008).
+<strong>The Taverna Interaction Service: enabling manual interaction in workflows.</strong>
+In: <em>Bioinformatics</em>. 24(8): 1118–1120.
+<a href="http://dx.doi.org/10.1093/bioinformatics/btn082">doi:10.1093/bioinformatics/btn082</a>
+<a href="http://bioinformatics.oxfordjournals.org/content/24/8/1118.full.pdf">[pdf]</a></p>
+<p>Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell. (2008).
+<strong>Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.</strong>
+In: <em>BMC Bioinformatics</em>. 9: 334.
+<a href="http://dx.doi.org/10.1186/1471-2105-9-334">doi:10.1186/1471-2105-9-334</a></p>
+<p>K. Maheshwari, J. Montagnat, P. Missier. (2008).
+<strong>"Extending Taverna to exploit EGEE Grid resources,"</strong>
+in <em>E-science</em>.</p>
+<p>Paolo Missier, Khalid Belhajjame, Jun Zhao, Carole Goble. (2008).
+<strong>"Data lineage model for Taverna workflows with lightweight annotation requirements,"</strong>
+in <em>Provenance and Annotation of Data and Processes, Second International Provenance and Annotation Workshop (IPAW'08)</em>, Springer, Berlin, 17–18 Jun 2008: 17–30.
+<a href="http:dx.doi.org/10.1007/978-3-540-89965-5_4">doi:10.1007/978-3-540-89965-5_4</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:2f37">[escholar]</a></p>
+<p>Jun Zhao, Carole Goble, Robert Stevens, Danielle Turi. (2008).
+<strong>Mining Taverna's semantic web of provenance.</strong>
+In: <em>Concurrency and Computation: Practice and Experience</em>. 20(5): 463–472.
+<a href="http://dx.doi.org/10.1002/cpe.1231">doi:10.1002/cpe.1231</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:1f9">[escholar]</a></p>
+<h2 id="2007">2007<a class="headerlink" href="#2007" title="Permanent link">¶</a></h2>
+<p>David De Roure, Carole Goble, Robert Stevens. (2007).
+<strong>"Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows,"</strong>
+in <em>e-Science and Grid Computing, IEEE International Conference on</em>, 10-13 December 2007: 603–610.
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:2h465">[escholar]</a>
+<a href="http://eprints.soton.ac.uk/265838/1/MyExptPart1v7.pdf">[eprints]</a></p>
+<p>Paul Fisher, Cornelia Hedeler, Kathernine Wolstencroft, Helen Hulme, Harry Noyes, Stephen Kemp, Robert Stevens, Andrew Brass. (2007).
+<strong>A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis.</strong>
+In: <em>Nucleic Acids Research</em>. 35(16): 5625–5633.
+<a href="http://dx.doi.org/10.1093/nar/gkm623">doi:10.1093/nar/gkm623</a></p>
+<p>Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole Goble. (2007).
+<strong>"The Data Playground: An Intuitive Workflow Specification Environment,"</strong>
+in <em>e-Science and Grid Computing, IEEE International Conference on</em>, 10-13 December 2007: 59–68.
+<a href="http://dx.doi.org/10.1109/E-SCIENCE.2007.72">doi:10.1109/E-SCIENCE.2007.72</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:2f159">[escholar]</a></p>
+<p>Carole Goble, Katy Wolstencroft, Antoon Goderis, Dunan Hull, Jun Zhao, Pinar Alper, Phillip Lord, Chris Wroe, Khalid Belhajjame, Danielle Turi, Robert Stevens, Tom Oinn, David De Roure. (2007).
+<strong>"Knowledge discovery for biology with Taverna,"</strong>
+in <em>Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences</em>*. Springer-Verlag, New York: 355–395
+<a href="http://dx.doi.org/10.1007/978-0-387-48438-9_17">doi:10.1007/978-0-387-48438-9_17</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:237027">[escholar]</a></p>
+<p>Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell. (2007).
+<strong>Automated manipulation of systems biology models using libSBML within Taverna workflows.</strong>
+In: <em>Bioinformatics</em>, 24(2): 287–289.
+<a href="http://dx.doi.org/10.1093/bioinformatics/btm578">doi:10.1093/bioinformatics/btm578</a>
+<a href="http://bioinformatics.oxfordjournals.org/content/24/2/287.full.pdf">[pdf]</a></p>
+<p>Daniele Turi, Paolo Missier, Carole Goble, David De Roure, Tom Oinn. (2007). <strong>"Taverna workflows: syntax and semantics,"</strong>
+in <em>e-Science and Grid Computing, IEEE International Conference on</em>, 10-13 Dec. 2007: 441–448, .
+<a href="http://dx.doi.org/10.1109/E-SCIENCE.2007.71">doi:10.1109/E-SCIENCE.2007.71</a></p>
+<p>Nicholas Walton, Dugan Witherick, Thomas Oinn, Kevin Benson. (2007).
+<strong>"Taverna and Workflows in the Virtual Observatory,"</strong>
+in <em>Astronomical Data Analysis Software & Systems {XVII}</em>.
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:238963">[escholar]</a></p>
+<p>K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P. Lord, R. Stevens, C. Goble. (2007).
+<strong>The myGrid ontology: bioinformatics service discovery</strong>.
+In: <em>International Journal of Bioinformatics Research and Applications (IJBRA)</em>, 3(3): 303–325.
+<a href="http://dx.doi.org/10.1504/IJBRA.2007.015005">doi:10.1504/IJBRA.2007.015005</a></p>
+<h1 id="2006">2006<a class="headerlink" href="#2006" title="Permanent link">¶</a></h1>
+<p>Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole Goble, Matthew R. Pocock, Peter Li, Tom Oinn. (2006).
+<strong>Taverna: a tool for building and running workflows of services.</strong>
+In: <em>Nucleic Acids Research</em>, 34(Web Server issue): 729–732.
+<a href="http://dx.doi.org/10.1093/nar/gkl320">doi:10.1093/nar/gkl320</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:1h249">[escholar]</a></p>
+<p>Peter Li, Andrew Brass, John Pinney, Thomas Oinn, Douglas Kell, Carole Goble, C. (2006).
+<strong>"Taverna workflows for systems biology,"</strong>
+in <em>International Conference on Systems Biology</em>.
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:237056">[escholar]</a></p>
+<p>Tom Oinn, Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe. (2006).
+<strong>Taverna: lessons in creating a workflow environment for the life sciences</strong>.
+In: <em>Concurrency and Computation: Practice and Experience</em>, 18(10): 1067–1100.
+<a href="http://dx.doi.org/10.1002/cpe.993">doi:10.1002/cpe.993</a></p>
+<p>Thomas Oinn, Peter Li, Douglas Kell, Carole Goble, Antoon Goderis, Mark Greenwood, Duncan Hull, Robert Stevens, Danielle Turi, Jun Zhao. (2006). <strong>"Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community"</strong>
+ in <em>Workflows for e-Science, Scientific Workflows for Grids</em>. Springer-Verlag, London.
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:237055">[escholar]</a></p>
+<h2 id="2005">2005<a class="headerlink" href="#2005" title="Permanent link">¶</a></h2>
+<p>M. Nedim Alpdemir, Arijit Mukherjee, Norman W. Paton, Alvaro A. A. Fernandes, Paul Watson, Kevin Glover, Chris Greenhalgh, Tom Oinn, Hannah Tipney. (2005).
+<strong>"Contextualised Workflow Execution in MyGrid",</strong>
+in <em>Advances in Grid Computing - EGC 2005: European Grid Conference</em>, 14–16 Feb 2005: 444–453.
+<a href="http://dx.doi.org/10.1007/11508380_46">doi:10.1007/11508380_46</a>
+<a href="https://www.researchgate.net/publication/221335727_Contextualised_Workflow_Execution_in_MyGrid">[researchgate]</a></p>
+<p>S. Egglestone, N. Alpdemir, C. Greenhalgh, A. Mukherjee, I. Roberts. (2005).
+<strong>"A portal interface to myGrid workflow technology,"</strong>
+in <em>All Hands Meeting</em>.</p>
+<p>Antoon Goderis, Ulrike Sattler, Phillip Lord, Carole Goble. (2005).
+<strong>"Seven Bottlenecks to Workflow Reuse and Repurposing,"</strong>
+in <em>The Semantic Web—ISWC 2005: 4th International Semantic Web Conference (ISWC 2005)</em>, 6–10 Nov 2005; Springer, Berlin: 323–337.
+<a href="http://dx.doi.org/10.1007/11574620_25">doi:10.1007/11574620_25</a>
+<a href="https://www.escholar.manchester.ac.uk/uk-ac-man-scw:2h480">[escholar]</a></p>
+<p>A. Lanzen, S. Grindhaug, T. Oinn, P. Pal. (2005).
+<strong>"An Automatic Genome Annotation Pipeline,"</strong>
+in <em>Network Tools and Applications in Biology</em>.</p>
+<p>K. Wolstencroft, T. Oinn, C. Goble, J. Ferris, C. Wroe, P. Lord, K. Glover, R. Stevens. (2005).
+<strong>"Panoply of Utilities in Taverna,"</strong>
+in <em>e-Science and Grid Computing, 2005. First International Conference on</em>: 156–162.
+<a href="http://dx.doi.org/10.1109/E-SCIENCE.2005.65">doi:10.1109/E-SCIENCE.2005.65</a></p>
+<h2 id="2004">2004<a class="headerlink" href="#2004" title="Permanent link">¶</a></h2>
+<p>Tom Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li. (2004).
+<strong>Taverna: a tool for the composition and enactment of bioinformatics workflows.</strong>
+In: <em>Bioinformatics</em>, 20(17): 3045–3054.
+<a href="http://dx.doi.org/10.1093/bioinformatics/bth361">doi:10.1093/bioinformatics/bth361</a></p>
+<p>N. Sharman, N. Alpdemir, J. Ferris, M. Greenwood, P. Li, C. Wroe. (2004).
+<strong>"The myGrid Information Model,"</strong>
+in <em>All Hands Meeting</em>.</p>
+<p>R.D. Stevens, H. J. Tipney, C. J. Wroe, T. M. Oinn, M. Senger, P. W. Lord, C. A. Goble, A. Brass, M. Tassabehji. (2004).
+<strong>Exploring Williams-Beuren syndrome using myGrid.</strong>
+In: <em>Bioinformatics</em>, 20(suppl 1): i303–310.
+<a href="http://dx.doi.org/10.1093/bioinformatics/bth944">doi:10.1093/bioinformatics/bth944</a>
+<a href="http://bioinformatics.oxfordjournals.org/content/20/suppl_1/i303.full.pdf">[pdf]</a></p>
+<h2 id="2003">2003<a class="headerlink" href="#2003" title="Permanent link">¶</a></h2>
+<p>Robert D. Stevens, Alan J. Robinson, Carole A. Goble. (2003). <strong>myGrid: personalised bioinformatics on the information grid.</strong>
+In: <em>Bioinformatics</em>, 19(suppl 1): i302–304.
+<a href="http://dx.doi.org/10.1093/bioinformatics/btg1041">doi:10.1093/bioinformatics/btg1041</a>
+<a href="http://bioinformatics.oxfordjournals.org/content/19/suppl_1/i302.full.pdf+html">[pdf]</a></p>
+<p>Jun Zhao, Carol Goble, Mark Greenwood, Chris Wroe, Robert Stevens. (2003).
+<strong>"Annotating, linking and browsing provenance logs for e-Science,"</strong>
+in <em>International Semantic Web Conference</em>.
+<a href="http://ceur-ws.org/Vol-83/prov_2.pdf">[pdf]</a></p></div>
+
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