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Posted to issues@spark.apache.org by "Greg Senia (JIRA)" <ji...@apache.org> on 2018/10/19 04:26:00 UTC
[jira] [Created] (SPARK-25778) WriteAheadLogBackedBlockRDD in YARN
Cluster Mode Fails due lack of access
Greg Senia created SPARK-25778:
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Summary: WriteAheadLogBackedBlockRDD in YARN Cluster Mode Fails due lack of access
Key: SPARK-25778
URL: https://issues.apache.org/jira/browse/SPARK-25778
Project: Spark
Issue Type: Improvement
Components: Structured Streaming, YARN
Affects Versions: 2.3.2, 2.3.1, 2.2.2, 2.2.1
Reporter: Greg Senia
WriteAheadLogBackedBlockRDD in YARN Cluster Mode Fails due lack of access to HDFS path due to it using a similar name was $PWD folder from YARN AM Cluster Mode for Spark
While attempting to use Spark Streaming and WriteAheadLogs. I noticed the following errors after the driver attempted to recovery the already read data that was being written to HDFS in the checkpoint folder. After spending many hours looking at the cause of the following error below due to the fact the parent folder /hadoop exists in our HDFS FS.. I am wonder if its possible to make an option configurable to choose an alternate bogus directory that will never be used.
hadoop fs -ls /
drwx------ - dsadm dsadm 0 2017-06-20 13:20 /hadoop
hadoop fs -ls /hadoop/apps
drwx------ - dsadm dsadm 0 2017-06-20 13:20 /hadoop/apps
streaming/src/main/scala/org/apache/spark/streaming/rdd/WriteAheadLogBackedBlockRDD.scala
val nonExistentDirectory = new File(
System.getProperty("java.io.tmpdir"), UUID.randomUUID().toString).getAbsolutePath
writeAheadLog = WriteAheadLogUtils.createLogForReceiver(
SparkEnv.get.conf, nonExistentDirectory, hadoopConf)
dataRead = writeAheadLog.read(partition.walRecordHandle)
18/10/19 00:03:03 DEBUG YarnSchedulerBackend$YarnDriverEndpoint: Launching task 72 on executor id: 1 hostname: ha20t5002dn.tech.hdp.example.com.
18/10/19 00:03:03 DEBUG BlockManager: Getting local block broadcast_4_piece0 as bytes
18/10/19 00:03:03 DEBUG BlockManager: Level for block broadcast_4_piece0 is StorageLevel(disk, memory, 1 replicas)
18/10/19 00:03:03 INFO BlockManagerInfo: Added broadcast_4_piece0 in memory on ha20t5002dn.tech.hdp.example.com:32768 (size: 33.7 KB, free: 912.2 MB)
18/10/19 00:03:03 WARN TaskSetManager: Lost task 0.0 in stage 3.0 (TID 71, ha20t5002dn.tech.hdp.example.com, executor 1): org.apache.spark.SparkException: Could not read data from write ahead log record FileBasedWriteAheadLogSegment(hdfs://tech/user/hdpdevspark/sparkstreaming/Spark_Streaming_MQ_IDMS/receivedData/0/log-1539921695606-1539921755606,0,1017)
at org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.org$apache$spark$streaming$rdd$WriteAheadLogBackedBlockRDD$$getBlockFromWriteAheadLog$1(WriteAheadLogBackedBlockRDD.scala:145)
at org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD$$anonfun$compute$1.apply(WriteAheadLogBackedBlockRDD.scala:173)
at org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD$$anonfun$compute$1.apply(WriteAheadLogBackedBlockRDD.scala:173)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.compute(WriteAheadLogBackedBlockRDD.scala:173)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
at org.apache.spark.scheduler.Task.run(Task.scala:108)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:338)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.hadoop.security.AccessControlException: Permission denied: user=hdpdevspark, access=EXECUTE, inode="/hadoop/diskc/hadoop/yarn/local/usercache/hdpdevspark/appcache/application_1539554105597_0338/container_e322_1539554105597_0338_01_000002/tmp/170f36b8-9202-4556-89a4-64587c7136b6":dsadm:dsadm:drwx------
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.check(FSPermissionChecker.java:319)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkTraverse(FSPermissionChecker.java:259)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:205)
at org.apache.ranger.authorization.hadoop.RangerHdfsAuthorizer$RangerAccessControlEnforcer.checkPermission(RangerHdfsAuthorizer.java:307)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:190)
at org.apache.hadoop.hdfs.server.namenode.FSDirectory.checkPermission(FSDirectory.java:1827)
at org.apache.hadoop.hdfs.server.namenode.FSDirStatAndListingOp.getFileInfo(FSDirStatAndListingOp.java:108)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getFileInfo(FSNamesystem.java:3972)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getFileInfo(NameNodeRpcServer.java:1130)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getFileInfo(ClientNamenodeProtocolServerSideTranslatorPB.java:851)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2313)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2309)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1740)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2307)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:2110)
at org.apache.hadoop.hdfs.DistributedFileSystem$22.doCall(DistributedFileSystem.java:1305)
at org.apache.hadoop.hdfs.DistributedFileSystem$22.doCall(DistributedFileSystem.java:1301)
at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
at org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:1317)
at com.wandisco.fs.client.ReplicatedFC.xlateAndGetFileStatus(ReplicatedFC.java:283)
at com.wandisco.fs.client.FusionHdfs.getFileStatus(FusionHdfs.java:277)
at org.apache.spark.streaming.util.FileBasedWriteAheadLog.initializeOrRecover(FileBasedWriteAheadLog.scala:245)
at org.apache.spark.streaming.util.FileBasedWriteAheadLog.<init>(FileBasedWriteAheadLog.scala:80)
at org.apache.spark.streaming.util.WriteAheadLogUtils$$anonfun$2.apply(WriteAheadLogUtils.scala:142)
at org.apache.spark.streaming.util.WriteAheadLogUtils$$anonfun$2.apply(WriteAheadLogUtils.scala:142)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.streaming.util.WriteAheadLogUtils$.createLog(WriteAheadLogUtils.scala:141)
at org.apache.spark.streaming.util.WriteAheadLogUtils$.createLogForReceiver(WriteAheadLogUtils.scala:111)
at org.apache.spark.streaming.rdd.WriteAheadLogBackedBlockRDD.org$apache$spark$streaming$rdd$WriteAheadLogBackedBlockRDD$$getBlockFromWriteAheadLog$1(WriteAheadLogBackedBlockRDD.scala:140)
... 12 more
Caused by: org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.AccessControlException): Permission denied: user=hdpdevspark, access=EXECUTE, inode="/hadoop/diskc/hadoop/yarn/local/usercache/hdpdevspark/appcache/application_1539554105597_0338/container_e322_1539554105597_0338_01_000002/tmp/170f36b8-9202-4556-89a4-64587c7136b6":dsadm:dsadm:drwx------
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.check(FSPermissionChecker.java:319)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkTraverse(FSPermissionChecker.java:259)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:205)
at org.apache.ranger.authorization.hadoop.RangerHdfsAuthorizer$RangerAccessControlEnforcer.checkPermission(RangerHdfsAuthorizer.java:307)
at org.apache.hadoop.hdfs.server.namenode.FSPermissionChecker.checkPermission(FSPermissionChecker.java:190)
at org.apache.hadoop.hdfs.server.namenode.FSDirectory.checkPermission(FSDirectory.java:1827)
at org.apache.hadoop.hdfs.server.namenode.FSDirStatAndListingOp.getFileInfo(FSDirStatAndListingOp.java:108)
at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getFileInfo(FSNamesystem.java:3972)
at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getFileInfo(NameNodeRpcServer.java:1130)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getFileInfo(ClientNamenodeProtocolServerSideTranslatorPB.java:851)
at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:640)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:982)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2313)
at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2309)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1740)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2307)
at org.apache.hadoop.ipc.Client.call(Client.java:1475)
at org.apache.hadoop.ipc.Client.call(Client.java:1412)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:229)
at com.sun.proxy.$Proxy17.getFileInfo(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getFileInfo(ClientNamenodeProtocolTranslatorPB.java:771)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy18.getFileInfo(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient.getFileInfo(DFSClient.java:2108)
... 26 more
18/10/19 00:03:03 DEBUG YarnClusterScheduler: parentName: , name: TaskSet_3.0, runningTasks: 0
18/10/19 00:03:03 DEBUG YarnClusterScheduler: parentName: , name: TaskSet_4.0, runningTasks: 1
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