You are viewing a plain text version of this content. The canonical link for it is here.
Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/07/19 19:45:18 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #821
See <https://builds.apache.org/job/ctakes-trunk-compiletest/821/changes>
Changes:
[clin] python scripts that are needed for running keras-based CNN
[clin] Enable Convolutional Neural Network for event-time classification. May need further debug.
NeuralEventTimeRelationsEvaluation: will evaluate pre-trained embedding features.
NeuralEventTimeRelationsCNNEvaluation: will write sequece of tokens to feed in to the CNN.
Both above evals will evaluate the test instances within the cleartk framework.
[clin] add syntactic embedding features for classic event-event model
[clin] add syntactic features for classic event-time model
[clin] temporally remove confidence score from classification results for CNN implementation
[clin] modify the way to generate embedding features for CNN
[clin] relax the rule for removing non-contains relations
------------------------------------------
[...truncated 13114 lines...]
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:39 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
19 Jul 2016 19:44:39 INFO SentenceDetector - Starting processing.
19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:39 INFO LvgAnnotator - process(JCas)
19 Jul 2016 19:44:39 INFO ContextDependentTokenizerAnnotator - process(JCas)
19 Jul 2016 19:44:39 INFO POSTagger - process(JCas)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
19 Jul 2016 19:44:39 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument
id: 0
argument: TimeMention
sofa: _InitialView
begin: 58
end: 66
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: <null>
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.504 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
19 Jul 2016 19:44:42 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000767580000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/hs_err_pid4708.log>
Results :
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [15.949s]
[INFO] Apache cTAKES common type system .................. SUCCESS [15.958s]
[INFO] Apache cTAKES utils ............................... SUCCESS [9.692s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.421s]
[INFO] Apache cTAKES core ................................ SUCCESS [1:02.226s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [3.411s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [11.474s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.392s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.527s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.786s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [22.830s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [11.011s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [3.870s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [31.424s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.200s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.527s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.738s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [9.206s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [5.741s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [3.746s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.388s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [6.045s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [27.508s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [24.540s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.539s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [14.497s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.776s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [4.697s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [10.137s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [6.554s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [14.833s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.540s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [16.745s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [17.921s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [10.895s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [1:33.888s]
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 8:57.170s
[INFO] Finished at: Tue Jul 19 19:44:48 UTC 2016
[INFO] Final Memory: 98M/588M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org clin@yelp.com
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #824
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/824/changes>
Changes:
[tmill] Add model of selectional preferences for coref.
------------------------------------------
[...truncated 12229 lines...]
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal ---
[INFO] Compiling 6 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/test-classes>
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
25 Jul 2016 17:35:39 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jul 2016 17:35:50 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jul 2016 17:35:50 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal//data/rules/dm.rul'.>
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
25 Jul 2016 17:35:51 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jul 2016 17:35:51 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jul 2016 17:35:52 INFO SentenceDetector - Starting processing.
25 Jul 2016 17:35:52 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jul 2016 17:35:52 INFO LvgAnnotator - process(JCas)
25 Jul 2016 17:35:52 INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jul 2016 17:35:52 INFO POSTagger - process(JCas)
25 Jul 2016 17:35:52 INFO BackwardsTimeAnnotatorTest - Event: recently
25 Jul 2016 17:35:52 INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.316 sec
Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest
25 Jul 2016 17:35:56 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
..........
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.727s]
[INFO] Apache cTAKES common type system .................. SUCCESS [13.018s]
[INFO] Apache cTAKES utils ............................... SUCCESS [4.382s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [1.557s]
[INFO] Apache cTAKES core ................................ SUCCESS [38.106s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.547s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.547s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [1.888s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.411s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.116s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [21.218s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [3.791s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.462s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [32.862s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.605s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.476s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.604s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.827s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.314s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.114s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [1.678s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [3.686s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [31.214s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.703s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.691s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.889s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.477s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.058s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [14.360s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.571s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.387s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.759s]
[INFO] Apache cTAKES YTEX ................................ SUCCESS [7.973s]
[INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [11.970s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [9.209s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [56.357s]
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:15.928s
[INFO] Finished at: Mon Jul 25 17:36:02 UTC 2016
[INFO] Final Memory: 108M/749M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Execution default-test of goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test failed: The forked VM terminated without saying properly goodbye. VM crash or System.exit called ? -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #823
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/changes>
Jenkins build is unstable: ctakes-trunk-compiletest #822
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/822/changes>