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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/26 18:04:01 UTC
svn commit: r941566 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-in-use/biology.html
Author: buildbot
Date: Thu Feb 26 17:04:00 2015
New Revision: 941566
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/introduction/taverna-in-use/biology.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
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Propchange: websites/staging/taverna/trunk/content/
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Modified: websites/staging/taverna/trunk/content/introduction/taverna-in-use/biology.html
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--- websites/staging/taverna/trunk/content/introduction/taverna-in-use/biology.html (original)
+++ websites/staging/taverna/trunk/content/introduction/taverna-in-use/biology.html Thu Feb 26 17:04:00 2015
@@ -180,8 +180,12 @@ Instead it shows <a class="alert-link" h
(MCISB) â modelling metabolomic pathways</li>
<li><a href="#sb-os">Systems Biology Operational Software</a> (SB.OS) -
a live DVD based on Ubuntu Linux that comes with a comprehensive list of Systems Biology Software (including Taverna)</li>
-<li><a href="#tav4sb">Tav4SB</a> - Taverna workflows for systems biology,
+<li><a href="#metware">MetWare</a> - applications, databases and workflows for metabolomics</li>
+<li><a href="/introduction/taverna-in-use/biology#tav4sb">Tav4SB</a> - Taverna workflows for systems biology,
in particular for analysis of the kinetic models of biological systems</li>
+<li><a href="/introduction/taverna-in-use/biology#ccpn">CCPN</a> - Taverna is used to encapsulate and combine protocols between
+ WeNMR (Worldwide e-Infrastructure for NMR and structural biology) portals and CCPN's
+ (Collaborative Computing Project for NMR) software. </li>
</ul>
<p>Taverna is also used for analysis of plant biology:</p>
<ul>
@@ -189,7 +193,7 @@ Instead it shows <a class="alert-link" h
(AFAWE) â protein prediction and annotation by a tool that calls workflows</li>
<li><a href="#planet">PLANET (A Network of European Plant Databases)</a> â calling of workflows from a portal</li>
</ul>
-<p><a name="enfin"<a></p>
+<p><a name="enfin"></a></p>
<h2 id="enfin">ENFIN</h2>
<p>The partners within the ENFIN - Enabling Systems Biology <a href="http://www.enfin.org/">project</a>
developed a suite of Systems Biology tools (ENSUITE).
@@ -234,6 +238,15 @@ Quantitative models of these metabolic p
a comprehensive list of Systems Biology Software.
Text and video documentation material,
as well as an offline copy of the BioModels.net database and Taverna 2.1, are included.</p>
+<p><a name="metware"></a></p>
+<h2 id="metware">MetWare</h2>
+<p>The MetWare project provides applications, databases and workflows for metabolomics.
+The MetWare project is a collaboration between several metabolomics groups in the Netherlands and Germany.</p>
+<p>The work involving Taverna workflows is done by
+ <a href="http://www.ipb-halle.de/en/research/stress-and-developmental-biology/all-staff/">Steffen Neumanns group (Bioinformatics & Mass Spectrometry)</a>.</p>
+<p>They developed a Web-based player of Taverna workflows and also have uploaded their workflows on myExperiment at
+ <a href="http://www.myexperiment.org/users/937/workflows">http://www.myexperiment.org/users/937/workflows</a>.</p>
+<p><a href="http://sourceforge.net/apps/mediawiki/metware/index.php?title=Main_Page">Software project page</a> can be found at Sorceforge.</p>
<p><a name="tav4sb"></a></p>
<h2 id="tav4sb">Tav4SB</h2>
<p><a href="http://bioputer.mimuw.edu.pl/tav4sb/">Tav4SB project</a> provides a grid environment with a set of Web services,