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Posted to commits@ctakes.apache.org by ja...@apache.org on 2012/12/20 00:01:22 UTC
svn commit: r1424204 -
/incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java
Author: james-masanz
Date: Wed Dec 19 23:01:22 2012
New Revision: 1424204
URL: http://svn.apache.org/viewvc?rev=1424204&view=rev
Log:
CTAKES-47 codes and OUI in CreateLuceneIndexForSnomedLikeSample.java (were inconsistent)
Modified:
incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java
Modified: incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java?rev=1424204&r1=1424203&r2=1424204&view=diff
==============================================================================
--- incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java (original)
+++ incubator/ctakes/trunk/ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java Wed Dec 19 23:01:22 2012
@@ -173,9 +173,9 @@ public class CreateLuceneIndexForSnomedL
{ "00000205", "Cui0205", "cough", "cough", "CodingScheme#Cui0205#Ver", "Oui0006", "+", "T_SS"},
{ "00000206", "Cui0206", "pain", "pain", "CodingScheme#Cui0206#Ver", "Oui0007", "+", "T_SS"},
- { "00000306", "Cui0306", "carcinoma", "carcinoma", "CodingScheme#Cui0306#Ver", "Oui0008", "+", "T_DD"},
+ { "00000306", "Cui0306", "carcinoma", "carcinoma", "CodingScheme#Cui0306#Ver", "Oui0009", "+", "T_DD"},
{ "0000a307", "Cui0307", "carcinoma", "carcinoma secondary", "CodingScheme#Cui0307#Ver", "Oui0009", "+", "T_DD"}, // same first_word
- { "0000b307", "Cui0307", "carcinoma", "carcinoma metastatic", "CodingScheme#Cui0307#Ver", "Oui0010", "+", "T_DD"}, // same CUI
+ { "0000b307", "Cui0307", "carcinoma", "carcinoma metastatic", "CodingScheme#Cui0307#Ver", "Oui0009", "+", "T_DD"}, // same CUI
{ "00000309", "Cui0309", "hyperlipidemia", "hyperlipidemia", "CodingScheme#Cui0309#Ver", "Oui0011", "+", "T_DD"},
{ "xxxxxxxx", "Cuixxxx", "zyxabc123", "zyxabc123 for testing", "CodingScheme#Cuixxxx#Vxx", "Ouixxxx", "-", "T_xx"} // termStatus "-"
@@ -193,27 +193,27 @@ public class CreateLuceneIndexForSnomedL
String [] [] entries = {
// rowId umlsCode snomedCode
- { "000001", "Cui0001", "100001", "+"}, // pretend 2 Snomed codes for this umls term
- { "000002", "Cui0001", "200001", "+"},
+ { "000001", "Cui0001", "Oui0001", "+"}, // pretend 2 Snomed codes for this umls term
+ { "000002", "Cui0001", "Oui2221", "+"},
- { "000003", "Cui0002", "100002", "+"},
+ { "000003", "Cui0002", "Oui0002", "+"},
- { "000004", "Cui0100", "100100", "+"}, // pretend 3 Snomed codes map to this umls term
- { "000005", "Cui0100", "200100", "+"},
- { "000006", "Cui0100", "300100", "+"},
+ { "000004", "Cui0100", "Oui0003", "+"}, // pretend 3 Snomed codes map to this umls term
+ { "000005", "Cui0100", "Oui2223", "+"},
+ { "000006", "Cui0100", "Oui3333", "+"},
- { "000007", "Cui0101", "100101", "+"},
- { "000008", "Cui0102", "100102", "+"},
+ { "000007", "Cui0101", "Oui0004", "+"},
+ { "000008", "Cui0102", "Oui0005", "+"},
- { "000009", "Cui0205", "100205", "+"},
- { "000010", "Cui0206", "100206", "+"},
+ { "000009", "Cui0205", "Oui0006", "+"},
+ { "000010", "Cui0206", "Oui0007", "+"},
- { "000011", "Cui0306", "100306", "+"},
- { "000012", "Cui0307", "100307", "+"}, // note pretend only 1 example snomed code for the 2 UMLS terms
+ { "000011", "Cui0306", "Oui0009", "+"},
+ { "000012", "Cui0307", "Oui0009", "+"}, // note pretend only 1 example snomed code for the 2 UMLS terms
- { "000013", "Cui0309", "100309", "+"}, // pretend 2 Snomed codes for this umls term
- { "000014", "Cui0309", "200309", "+"},
- { "xxxxxx", "Cuixxxx", "zzzzzz", "+"}
+ { "000013", "Cui0309", "Oui0011", "+"}, // pretend 2 Snomed codes for this umls term
+ { "000014", "Cui0309", "Oui0012", "+"},
+ { "xxxxxx", "Cuixxxx", "zzzzzzz", "+"}
};