[GitHub] [beam] tvalentyn commented on a diff in pull request #21781: Sklearn Mnist example and IT test

[GitBox <gi...@apache.org>]

tvalentyn commented on code in PR #21781:
URL: https://github.com/apache/beam/pull/21781#discussion_r897928438


##########
sdks/python/apache_beam/examples/inference/sklearn_mnist_classification.py:
##########
@@ -0,0 +1,95 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+"""A pipeline that uses RunInference API to perform image classification."""
+
+import argparse
+from typing import Dict
+from typing import Iterable
+from typing import List
+from typing import Tuple
+
+import apache_beam as beam
+from apache_beam.ml.inference.api import PredictionResult
+from apache_beam.ml.inference.api import RunInference
+from apache_beam.ml.inference.sklearn_inference import ModelFileType
+from apache_beam.ml.inference.sklearn_inference import SklearnModelLoader
+from apache_beam.options.pipeline_options import PipelineOptions
+from apache_beam.options.pipeline_options import SetupOptions
+
+
+def process_input(row: str) -> Tuple[int, List[int]]:
+  data = row.split(',')
+  label, pixels = int(data[0]), data[1:]
+  pixels = [int(pixel) for pixel in pixels]
+  return label, pixels
+
+
+class PostProcessor(beam.DoFn):
+  def process(self, element: Tuple[int, PredictionResult]) -> Iterable[Dict]:
+    label, prediction_result = element
+    prediction = prediction_result.inference
+    yield {label: prediction}
+
+
+def parse_known_args(argv):
+  """Parses args for the workflow."""
+  parser = argparse.ArgumentParser()
+  parser.add_argument(
+      '--input_file',
+      dest='input',
+      help='CSV file with row containing label and pixel values.')
+  parser.add_argument(
+      '--output', dest='output', help='Path to save output predictions.')
+  parser.add_argument(
+      '--model_path',
+      dest='model_path',
+      help='Path to load the Sklearn model for Inference.')
+  return parser.parse_known_args(argv)
+
+
+def run(argv=None, save_main_session=True):
+  """Entry point. Defines and runs the pipeline."""
+  known_args, pipeline_args = parse_known_args(argv)
+  pipeline_options = PipelineOptions(pipeline_args)
+  pipeline_options.view_as(SetupOptions).save_main_session = save_main_session
+
+  model_loader = SklearnModelLoader(
+      model_file_type=ModelFileType.PICKLE, model_uri=known_args.model_path)
+
+  with beam.Pipeline(options=pipeline_options) as p:
+    label_pixel_tuple = (
+        p
+        | "ReadFromInput" >> beam.io.ReadFromText(
+            known_args.input, skip_header_lines=1)
+        | "Process inputs" >> beam.Map(process_input))
+
+    predictions = (
+        label_pixel_tuple
+        | "RunInference" >> RunInference(model_loader).with_output_types(
+            Tuple[int, PredictionResult])

Review Comment:
   not needed



##########
sdks/python/apache_beam/ml/inference/sklearn_inference_it_test.py:
##########
@@ -0,0 +1,51 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+"""End-to-End test for Sklearn Inference"""
+
+import logging
+import pytest
+import unittest
+import uuid
+
+from apache_beam.io.filesystems import FileSystems
+from apache_beam.examples.inference import sklearn_mnist_classification
+from apache_beam.testing.test_pipeline import TestPipeline
+
+
+class SklearnInference(unittest.TestCase):
+  @pytest.mark.it_postcommit
+  def test_predictions_output_file(self):
+    test_pipeline = TestPipeline(is_integration_test=True)
+    input_file = 'gs://apache-beam-ml/testing/inputs/it_mnist_data.csv'

Review Comment:
   if this will have to be downloaded separately, we should mention necessary instructions. You probably want to add a section in https://github.com/apache/beam/blob/master/sdks/python/apache_beam/examples/inference/README.md. 
   



##########
sdks/python/apache_beam/ml/inference/sklearn_inference_it_test.py:
##########
@@ -0,0 +1,51 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+"""End-to-End test for Sklearn Inference"""
+
+import logging
+import pytest
+import unittest
+import uuid
+
+from apache_beam.io.filesystems import FileSystems
+from apache_beam.examples.inference import sklearn_mnist_classification
+from apache_beam.testing.test_pipeline import TestPipeline
+
+
+class SklearnInference(unittest.TestCase):
+  @pytest.mark.it_postcommit
+  def test_predictions_output_file(self):
+    test_pipeline = TestPipeline(is_integration_test=True)
+    input_file = 'gs://apache-beam-ml/testing/inputs/it_mnist_data.csv'
+    output_file_dir = 'gs://apache-beam-ml/testing/predictions'  # pylint: disable=line-too-long
+    output_file = '/'.join([output_file_dir, str(uuid.uuid4()), 'result.txt'])
+    model_path = 'gs://apache-beam-ml/models/mnist_model_svm.pickle'  # pylint: disable=line-too-long
+    extra_opts = {
+        'input': input_file,
+        'output': output_file,
+        'model_path': model_path,
+    }
+    sklearn_mnist_classification.run(
+        test_pipeline.get_full_options_as_args(**extra_opts),
+        save_main_session=False)
+    self.assertEqual(FileSystems().exists(output_file), True)

Review Comment:
   Any plans to assert a specific result here?



##########
sdks/python/apache_beam/ml/inference/sklearn_inference_it_test.py:
##########
@@ -0,0 +1,51 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one or more
+# contributor license agreements.  See the NOTICE file distributed with
+# this work for additional information regarding copyright ownership.
+# The ASF licenses this file to You under the Apache License, Version 2.0
+# (the "License"); you may not use this file except in compliance with
+# the License.  You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+"""End-to-End test for Sklearn Inference"""
+
+import logging
+import pytest
+import unittest
+import uuid
+
+from apache_beam.io.filesystems import FileSystems
+from apache_beam.examples.inference import sklearn_mnist_classification
+from apache_beam.testing.test_pipeline import TestPipeline
+
+
+class SklearnInference(unittest.TestCase):
+  @pytest.mark.it_postcommit
+  def test_predictions_output_file(self):
+    test_pipeline = TestPipeline(is_integration_test=True)
+    input_file = 'gs://apache-beam-ml/testing/inputs/it_mnist_data.csv'
+    output_file_dir = 'gs://apache-beam-ml/testing/predictions'  # pylint: disable=line-too-long
+    output_file = '/'.join([output_file_dir, str(uuid.uuid4()), 'result.txt'])
+    model_path = 'gs://apache-beam-ml/models/mnist_model_svm.pickle'  # pylint: disable=line-too-long

Review Comment:
   As mentioned on another PR, it's better to use gs://temp-storage-for-end-to-end-tests/ for output results so they are automatically cleaned up.



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