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Posted to user@arrow.apache.org by Julio Trecenti <ju...@gmail.com> on 2019/08/12 20:22:21 UTC
install R package
Hi! I've just tried to install {arrow} package using
install.packages("arrow") and this is what I get:
System: Ubuntu 18.04
R version: 3.6.1
> install.packages("arrow")
Installing package into ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/arrow_0.14.1.1.tar.gz'
Content type 'application/x-gzip' length 105910 bytes (103 KB)
==================================================
downloaded 103 KB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
PKG_CFLAGS= -DARROW_R_WITH_ARROW
PKG_LIBS=-larrow -lparquet
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DARROW_R_WITH_ARROW
-I"/home/jt/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include"
-fvisibility=hidden -fpic -g -O2
-fdebug-prefix-map=/build/r-base-V0XiTa/r-base-3.6.1=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
In file included from array.cpp:18:
./arrow_types.h:179:10: fatal error: parquet/arrow/reader.h: No such file
or directory
#include <parquet/arrow/reader.h>
^~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make: *** [/usr/lib/R/etc/Makeconf:176: array.o] Error 1
ERROR: compilation failed for package ‘arrow’
* removing ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
* restoring previous ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
Warning in install.packages :
installation of package ‘arrow’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpzZ4tFO/downloaded_packages’
--Julio
Re: install R package
Posted by Wes McKinney <we...@gmail.com>.
Great! Can someone open a JIRA issue about improving the documentation
for R users?
On Mon, Aug 12, 2019 at 4:16 PM Julio Trecenti <ju...@gmail.com> wrote:
>
> I followed jeroen's code and it worked!!
>
> https://gist.github.com/jeroen/15ce75d4f1194af6d48294b72a926f54
>
> Thanks!
> --Julio
>
>
> On Mon, Aug 12, 2019 at 5:39 PM Wes McKinney <we...@gmail.com> wrote:
>>
>> hi Julio,
>>
>> The R package requires you to have the Arrow and Parquet C++ libraries
>> installed. You can see instructions for installing these on Linux at
>>
>> http://arrow.apache.org/install/
>>
>> The package is supposed to successfully install if the libraries
>> aren't present, though, so there might be some bug with that logic.
>>
>> - Wes
>>
>> On Mon, Aug 12, 2019 at 3:22 PM Julio Trecenti <ju...@gmail.com> wrote:
>> >
>> > Hi! I've just tried to install {arrow} package using install.packages("arrow") and this is what I get:
>> >
>> > System: Ubuntu 18.04
>> > R version: 3.6.1
>> >
>> > > install.packages("arrow")
>> > Installing package into ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6’
>> > (as ‘lib’ is unspecified)
>> > trying URL 'https://cloud.r-project.org/src/contrib/arrow_0.14.1.1.tar.gz'
>> > Content type 'application/x-gzip' length 105910 bytes (103 KB)
>> > ==================================================
>> > downloaded 103 KB
>> >
>> > * installing *source* package ‘arrow’ ...
>> > ** package ‘arrow’ successfully unpacked and MD5 sums checked
>> > ** using staged installation
>> > PKG_CFLAGS= -DARROW_R_WITH_ARROW
>> > PKG_LIBS=-larrow -lparquet
>> > ** libs
>> > g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DARROW_R_WITH_ARROW -I"/home/jt/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-V0XiTa/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
>> > In file included from array.cpp:18:
>> > ./arrow_types.h:179:10: fatal error: parquet/arrow/reader.h: No such file or directory
>> > #include <parquet/arrow/reader.h>
>> > ^~~~~~~~~~~~~~~~~~~~~~~~
>> > compilation terminated.
>> > make: *** [/usr/lib/R/etc/Makeconf:176: array.o] Error 1
>> > ERROR: compilation failed for package ‘arrow’
>> > * removing ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
>> > * restoring previous ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
>> > Warning in install.packages :
>> > installation of package ‘arrow’ had non-zero exit status
>> >
>> > The downloaded source packages are in
>> > ‘/tmp/RtmpzZ4tFO/downloaded_packages’
>> >
>> >
>> > --Julio
Re: install R package
Posted by Julio Trecenti <ju...@gmail.com>.
I followed jeroen's code and it worked!!
https://gist.github.com/jeroen/15ce75d4f1194af6d48294b72a926f54
Thanks!
--Julio
On Mon, Aug 12, 2019 at 5:39 PM Wes McKinney <we...@gmail.com> wrote:
> hi Julio,
>
> The R package requires you to have the Arrow and Parquet C++ libraries
> installed. You can see instructions for installing these on Linux at
>
> http://arrow.apache.org/install/
>
> The package is supposed to successfully install if the libraries
> aren't present, though, so there might be some bug with that logic.
>
> - Wes
>
> On Mon, Aug 12, 2019 at 3:22 PM Julio Trecenti <ju...@gmail.com>
> wrote:
> >
> > Hi! I've just tried to install {arrow} package using
> install.packages("arrow") and this is what I get:
> >
> > System: Ubuntu 18.04
> > R version: 3.6.1
> >
> > > install.packages("arrow")
> > Installing package into ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6’
> > (as ‘lib’ is unspecified)
> > trying URL '
> https://cloud.r-project.org/src/contrib/arrow_0.14.1.1.tar.gz'
> > Content type 'application/x-gzip' length 105910 bytes (103 KB)
> > ==================================================
> > downloaded 103 KB
> >
> > * installing *source* package ‘arrow’ ...
> > ** package ‘arrow’ successfully unpacked and MD5 sums checked
> > ** using staged installation
> > PKG_CFLAGS= -DARROW_R_WITH_ARROW
> > PKG_LIBS=-larrow -lparquet
> > ** libs
> > g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DARROW_R_WITH_ARROW
> -I"/home/jt/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include"
> -fvisibility=hidden -fpic -g -O2
> -fdebug-prefix-map=/build/r-base-V0XiTa/r-base-3.6.1=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
> > In file included from array.cpp:18:
> > ./arrow_types.h:179:10: fatal error: parquet/arrow/reader.h: No such
> file or directory
> > #include <parquet/arrow/reader.h>
> > ^~~~~~~~~~~~~~~~~~~~~~~~
> > compilation terminated.
> > make: *** [/usr/lib/R/etc/Makeconf:176: array.o] Error 1
> > ERROR: compilation failed for package ‘arrow’
> > * removing ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
> > * restoring previous ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
> > Warning in install.packages :
> > installation of package ‘arrow’ had non-zero exit status
> >
> > The downloaded source packages are in
> > ‘/tmp/RtmpzZ4tFO/downloaded_packages’
> >
> >
> > --Julio
>
Re: install R package
Posted by Wes McKinney <we...@gmail.com>.
hi Julio,
The R package requires you to have the Arrow and Parquet C++ libraries
installed. You can see instructions for installing these on Linux at
http://arrow.apache.org/install/
The package is supposed to successfully install if the libraries
aren't present, though, so there might be some bug with that logic.
- Wes
On Mon, Aug 12, 2019 at 3:22 PM Julio Trecenti <ju...@gmail.com> wrote:
>
> Hi! I've just tried to install {arrow} package using install.packages("arrow") and this is what I get:
>
> System: Ubuntu 18.04
> R version: 3.6.1
>
> > install.packages("arrow")
> Installing package into ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6’
> (as ‘lib’ is unspecified)
> trying URL 'https://cloud.r-project.org/src/contrib/arrow_0.14.1.1.tar.gz'
> Content type 'application/x-gzip' length 105910 bytes (103 KB)
> ==================================================
> downloaded 103 KB
>
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> PKG_CFLAGS= -DARROW_R_WITH_ARROW
> PKG_LIBS=-larrow -lparquet
> ** libs
> g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -DARROW_R_WITH_ARROW -I"/home/jt/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -fvisibility=hidden -fpic -g -O2 -fdebug-prefix-map=/build/r-base-V0XiTa/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.cpp -o array.o
> In file included from array.cpp:18:
> ./arrow_types.h:179:10: fatal error: parquet/arrow/reader.h: No such file or directory
> #include <parquet/arrow/reader.h>
> ^~~~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> make: *** [/usr/lib/R/etc/Makeconf:176: array.o] Error 1
> ERROR: compilation failed for package ‘arrow’
> * removing ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
> * restoring previous ‘/home/jt/R/x86_64-pc-linux-gnu-library/3.6/arrow’
> Warning in install.packages :
> installation of package ‘arrow’ had non-zero exit status
>
> The downloaded source packages are in
> ‘/tmp/RtmpzZ4tFO/downloaded_packages’
>
>
> --Julio