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Posted to commits@samza.apache.org by ni...@apache.org on 2016/02/02 01:35:49 UTC
[33/50] [abbrv] samza git commit: SAMZA-668 - Document YARN host
affinity in the website
SAMZA-668 - Document YARN host affinity in the website
Project: http://git-wip-us.apache.org/repos/asf/samza/repo
Commit: http://git-wip-us.apache.org/repos/asf/samza/commit/9b849bb1
Tree: http://git-wip-us.apache.org/repos/asf/samza/tree/9b849bb1
Diff: http://git-wip-us.apache.org/repos/asf/samza/diff/9b849bb1
Branch: refs/heads/samza-sql
Commit: 9b849bb14fd8a8fc50e0ae4fd1a66674d42335d1
Parents: 2ba1ea6
Author: Navina <na...@gmail.com>
Authored: Tue Nov 24 14:01:44 2015 -0800
Committer: Navina <na...@gmail.com>
Committed: Tue Nov 24 14:01:44 2015 -0800
----------------------------------------------------------------------
docs/learn/documentation/versioned/index.html | 1 +
.../versioned/yarn/application-master.md | 11 +-
.../versioned/yarn/yarn-host-affinity.md | 115 +++++++++++++++++++
3 files changed, 122 insertions(+), 5 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/samza/blob/9b849bb1/docs/learn/documentation/versioned/index.html
----------------------------------------------------------------------
diff --git a/docs/learn/documentation/versioned/index.html b/docs/learn/documentation/versioned/index.html
index d01a958..c2a7b29 100644
--- a/docs/learn/documentation/versioned/index.html
+++ b/docs/learn/documentation/versioned/index.html
@@ -81,6 +81,7 @@ title: Documentation
<ul class="documentation-list">
<li><a href="yarn/application-master.html">Application Master</a></li>
<li><a href="yarn/isolation.html">Isolation</a></li>
+ <li><a href="yarn/yarn-host-affinity.html">Host Affinity & Yarn</a></li>
<li><a href="hdfs/producer.html">Writing to HDFS</a></li>
<!-- TODO write yarn pages
<li><a href="">Fault Tolerance</a></li>
http://git-wip-us.apache.org/repos/asf/samza/blob/9b849bb1/docs/learn/documentation/versioned/yarn/application-master.md
----------------------------------------------------------------------
diff --git a/docs/learn/documentation/versioned/yarn/application-master.md b/docs/learn/documentation/versioned/yarn/application-master.md
index 807f6f3..ea33706 100644
--- a/docs/learn/documentation/versioned/yarn/application-master.md
+++ b/docs/learn/documentation/versioned/yarn/application-master.md
@@ -27,17 +27,18 @@ Samza's main integration with YARN comes in the form of a Samza ApplicationMaste
When the Samza ApplicationMaster starts up, it does the following:
-1. Receives configuration from YARN via the STREAMING_CONFIG environment variable.
+1. Creates the [Job Coordinator](../container/coordinator-stream.html#JobCoordinator) which bootstraps the Job Model and config from the [Coordinator Stream](../container/coordinator-stream.html).
2. Starts a JMX server on a random port.
3. Instantiates a metrics registry and reporters to keep track of relevant metrics.
4. Registers the AM with YARN's RM.
-5. Get the total number of partitions for the Samza job using each input stream's PartitionManager (see the [Streams](../container/streams.html) page for details).
+5. Gets the total number of partitions for the Samza job using each input stream's PartitionManager (see the [Streams](../container/streams.html) page for details).
6. Read the total number of containers requested from the Samza job's configuration.
7. Assign each partition to a container (called a Task Group in Samza's AM dashboard).
-8. Make a [ResourceRequest](http://hadoop.apache.org/docs/current/api/org/apache/hadoop/yarn/api/records/ResourceRequest.html) to YARN for each container.
-9. Poll the YARN RM every second to check for allocated and released containers.
+8. Make a [ResourceRequest](http://hadoop.apache.org/docs/current/api/org/apache/hadoop/yarn/api/records/ResourceRequest.html) to YARN for each container. If [host-affinity](yarn-host-affinity.html) is enabled on the job, the AM uses the container locality information provided by the Job Coordinator and requests for the same host in the ResourceRequest.
+9. Starts a ContainerAllocator thread that matches allocated containers and starts the container process.
+10. Poll the YARN RM every second to check for allocated and released containers.
-From this point on, the ApplicationMaster just reacts to events from the RM.
+From this point on, the ApplicationMaster just reacts to events from the RM and delegates it to the ContainerAllocator thread.
### Fault Tolerance
http://git-wip-us.apache.org/repos/asf/samza/blob/9b849bb1/docs/learn/documentation/versioned/yarn/yarn-host-affinity.md
----------------------------------------------------------------------
diff --git a/docs/learn/documentation/versioned/yarn/yarn-host-affinity.md b/docs/learn/documentation/versioned/yarn/yarn-host-affinity.md
new file mode 100644
index 0000000..108dfbc
--- /dev/null
+++ b/docs/learn/documentation/versioned/yarn/yarn-host-affinity.md
@@ -0,0 +1,115 @@
+---
+layout: page
+title: Host Affinity & YARN
+---
+<!--
+ Licensed to the Apache Software Foundation (ASF) under one or more
+ contributor license agreements. See the NOTICE file distributed with
+ this work for additional information regarding copyright ownership.
+ The ASF licenses this file to You under the Apache License, Version 2.0
+ (the "License"); you may not use this file except in compliance with
+ the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+-->
+
+In Samza, containers are the units of physical parallelism that runs on a set of machines. Each container is essentially a process that runs one or more stream tasks. Each task instance consumes one or more partitions of the input streams and is associated with its own durable data store.
+
+We define a *Stateful Samza Job* as the Samza job that uses a key-value store in its implementation, alone with an associated changelog stream. In stateful samza jobs, there is a 1:1 mapping between the task instance and the data store. Since the allocation of containers to machines in the Yarn cluster is completely left to Yarn, Samza does not guarantee that a container (and hence, its associated task(s)) gets deployed on the same machine. Containers can get shuffled in any of the following cases:
+
+1. When a job is upgraded by pointing <code>yarn.package.path</code> to the new package path and re-submitted.
+2. When a job is simply restarted by Yarn or the user
+3. When a container failure or premption triggers the SamzaAppMaster to re-allocate on another available resource
+
+In any of the above cases, the task's co-located data needs to be restored every time a container starts-up. Restoring data each time can be expensive, especially for applications that have a large data set. This behavior slows the start-up time for the job so much that the job is no longer "near realtime". Furthermore, if multiple stateful samza jobs restart around the same time in the cluster and they all share the same changelog system, then it is possible to quickly saturate the changelog system's network and cause a DDoS.
+
+For instance, consider a Samza job performing a Stream-Table join. Typically, such a job requires the dataset to be available on all processors before they begin processing the input stream. The dataset is usually large (order > 1TB) read-only data that will be used to join or add attributes to incoming messages. The job may initialize this cache by populated with data directly from a remote store or changelog stream. This cache initialization happens each time the container is restarted. This causes significant latency during job start-up.
+
+The solution, then, is to simply persist the state store on the machine in which the container process is executing and re-allocate the same host for the container each time the job is restarted, in order to re-use the persisted state. Thus, the ability of Samza to allocate a container to the same machine across job restarts is referred to as ***host-affinity***. Samza leverages host-affinity to enhance our support for local state re-use.
+
+## How does it work?
+
+When a stateful Samza job is deployed in Yarn, the state stores for the tasks are co-located in the current working directory of Yarn's application attempt.
+{% highlight bash %}
+container_working_dir=${yarn.nodemanager.local-dirs}/usercache/${user}/appcache/application_${appid}/container_${contid}/
+
+# Data Stores
+ls ${container_working_dir}/state/${store-name}/${task_name}/
+{% endhighlight %}
+
+This allows the Node Manager's (NM) DeletionService to clean-up the working directory once the application completes or fails. In order to re-use local state store, the state store needs to be persisted outside the scope of NM's deletion service. The cluster administrator should set this location as an environment variable in Yarn - <code>LOGGED\_STORE\_BASE\_DIR</code>.
+
+
+
+When a container is *cleanly shutdown*, Samza also writes the last materialized offset from the changelog stream to the checksumed file on disk. Thus, there is an *OFFSET* file associated with each state stores' changelog partitions, that is consumed by the tasks in the container.
+
+{% highlight bash %}
+${LOGGED_STORE_BASE_DIR}/${job.name}-${job.id}/${store.name}/${task.name}/OFFSET
+{% endhighlight %}
+
+Now, when a container restarts on the same machine after a clean shutdown and the OFFSET file exists, the Samza container:
+
+1. Opens the persisted store on disk
+2. Reads the OFFSET file
+3. Deletes the OFFSET file
+4. Restores the state store from the OFFSET value
+
+If the OFFSET file doesn't exist, it creates the state store and consumes from the oldest offset in the changelog to re-create the state. Note that Samza optimistically deletes the OFFSET file in step 3 to prevent data from getting corrupted due to any kind of failure during state restoration. This significantly reduces the state restoration time on container start-up as we no longer consume from the beginning of the changelog stream.
+
+It is necessary to periodically clean-up unused or orphaned state stores on the machines to manage disk-space. This feature is being worked on in [SAMZA-656](https://issues.apache.org/jira/browse/SAMZA-656).
+
+In order to re-use local state, Samza has to sucessfully claim the specific hosts from the Resource Manager (RM). To support this, the Samza containers write their locality information to the [Coordinator Stream](../container/coordinator-stream.html) every time they start-up successfully. Now, the Samza Application Master (AM) can identify the last known host of a container via the [Job Coordinator](../container/coordinator-stream.html)(JC) and the application is no longer agnostic of the container locality. On a container failure (due to any of the above cited reasons), the AM includes the hostname of the expected resource in the [ResourceRequest](https://github.com/apache/hadoop/blob/trunk/hadoop-yarn-project/hadoop-yarn/hadoop-yarn-api/src/main/java/org/apache/hadoop/yarn/api/records/ResourceRequest.java#L239]).
+
+Note that the Yarn cluster has to be configured to use [Fair Scheduler](https://hadoop.apache.org/docs/r2.6.0/hadoop-yarn/hadoop-yarn-site/FairScheduler.html) with continuous-scheduling enabled. With continuous scheduling, the scheduler continuously iterates through all nodes in the cluster, instead of relying on the nodes' heartbeat, and schedules work based on previously known status for each node, before relaxing locality. Hence, the scheduler takes care of relaxing locality after the configured delay. This approach can be considered as a "*best-effort stickiness*" policy because it is possible that the requested node is not running or does not have sufficient resources at the time of request (even though the state in the data stores may be persisted). For more details on the choice of Fair Scheduler, please refer the [design doc](https://issues.apache.org/jira/secure/attachment/12726945/DESIGN-SAMZA-617-2.pdf).
+
+
+## Configuring YARN cluster to support Host Affinity
+
+1. Enable local state re-use by setting the <code>LOGGED\_STORE\_BASE\_DIR</code> environment variable in yarn-env.sh {% highlight bash %}
+export LOGGED_STORE_BASE_DIR=<path-for-state-stores>
+{% endhighlight %} Without this configuration, the state stores are not persisted upon a container shutdown. This will effectively mean you will not re-use local state and hence, host-affinity becomes a moot operation.
+2. Configure Yarn to use Fair Scheduler and enable continuous-scheduling in yarn-site.xml {% highlight xml %}
+<property>
+ <name>yarn.resourcemanager.scheduler.class</name>
+ <description>The class to use as the resource scheduler.</description>
+ <value>org.apache.hadoop.yarn.server.resourcemanager.scheduler.fair.FairScheduler</value>
+</property>
+<property>
+ <name>yarn.scheduler.fair.continuous-scheduling-enabled</name>
+ <description>Enable Continuous Scheduling of Resource Requests</description>
+ <value>true</value>
+</property>
+<property>
+ <name>yarn.schedular.fair.locality-delay-node-ms</name>
+ <description>Delay time in milliseconds before relaxing locality at node-level</description>
+ <value>1000</value> <!-- Should be tuned per requirement -->
+</property>
+<property>
+ <name>yarn.schedular.fair.locality-delay-rack-ms</name>
+ <description>Delay time in milliseconds before relaxing locality at rack-level</description>
+ <value>1000*</value> <!-- Should be tuned per requirement -->
+</property>
+{% endhighlight %}
+
+
+## Configuring a Samza job to use Host Affinity
+Any stateful Samza job can leverage this feature to reduce the Mean Time To Restore (MTTR) of it's state stores by setting <code>yarn.samza.host-affinity</code> to true.
+{% highlight bash %}
+yarn.samza.host-affinity=true # Default: false
+{% endhighlight %}
+
+Enabling this feature for a stateless Samza job should not have any adverse effect on the job.
+
+
+## Host-affinity Guarantees
+As you have observed, host-affinity cannot be guaranteed all the time due to varibale load distribution in the Yarn cluster. Hence, this is a best-effort policy that Samza provides. However, certain scenarios are worth calling out where these guarantees may be hard to achieve or are not applicable.
+
+1. _When the number of containers and/or container-task assignment changes across successive application runs_ - We may be able to re-use local state for a subset of partitions. Currently, there is no logic in the Job Coordinator to handle partitioning of tasks among containers intelligently. Handling this is more involved as relates to [auto-scaling](https://issues.apache.org/jira/browse/SAMZA-336) of the containers.
+2. _When SystemStreamPartitionGrouper changes across successive application runs_ - When the grouper logic used to distribute the partitions across containers changes, the data in the Coordinator Stream (for changelog-task partition assignment etc) and the data stores becomes invalid. Thus, to be safe, we should flush out all state-related data from the Coordinator Stream. An alternative is to overwrite the Task-ChangelogPartition assignment message and the Container Locality message in the Coordinator Stream, before starting up the job again.
+