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Posted to issues@spark.apache.org by "Weizhong (JIRA)" <ji...@apache.org> on 2017/01/22 01:44:26 UTC
[jira] [Created] (SPARK-19325) Running query hang-up 5min
Weizhong created SPARK-19325:
--------------------------------
Summary: Running query hang-up 5min
Key: SPARK-19325
URL: https://issues.apache.org/jira/browse/SPARK-19325
Project: Spark
Issue Type: Bug
Components: SQL
Affects Versions: 1.5.2
Environment: OS: SUSE 12.1
JDK: Oracle JDK 1.8.0_112
Reporter: Weizhong
Priority: Minor
1. Running query, 1 stage hang-up 5min
2. The stage is:
{noformat}
PhysicalRDD(read from parquet file) --> Filter --> ConvertToUnsafe --> BroadcastHashJoin --> TungstenProject --> BroadcastHashJoin --> TungstenProject --> TungstenExchange
{noformat}
3. When hang-up, we dump the jstack, and details:
{noformat}
"Executor task launch worker-3" #147 daemon prio=5 os_prio=0 tid=0x00007fb5481af000 nid=0x3a166 runnable [0x00007fb4f18a6000]
java.lang.Thread.State: RUNNABLE
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
at org.apache.spark.scheduler.Task.run(Task.scala:90)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Locked ownable synchronizers:
- <0x00000002c590e7e0> (a java.util.concurrent.ThreadPoolExecutor$Worker)
"Executor task launch worker-2" #146 daemon prio=5 os_prio=0 tid=0x00007fb548b15000 nid=0x3a137 runnable [0x00007fb4f31e3000]
java.lang.Thread.State: RUNNABLE
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
at org.apache.spark.scheduler.Task.run(Task.scala:90)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Locked ownable synchronizers:
- <0x00000002c590fab0> (a java.util.concurrent.ThreadPoolExecutor$Worker)
"Executor task launch worker-1" #145 daemon prio=5 os_prio=0 tid=0x00007fb54a4c6000 nid=0x3a12f runnable [0x00007fb4f19a7000]
java.lang.Thread.State: RUNNABLE
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
at org.apache.spark.scheduler.Task.run(Task.scala:90)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Locked ownable synchronizers:
- <0x00000002c590ea30> (a java.util.concurrent.ThreadPoolExecutor$Worker)
"Executor task launch worker-0" #144 daemon prio=5 os_prio=0 tid=0x00007fb54a4c7800 nid=0x3a12e waiting on condition [0x00007fb4f1cdf000]
java.lang.Thread.State: RUNNABLE
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.fetchNext(HashJoin.scala:181)
at org.apache.spark.sql.execution.joins.HashJoin$$anon$1.hasNext(HashJoin.scala:149)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at org.apache.spark.util.collection.ExternalSorter.insertAll(ExternalSorter.scala:219)
at org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:75)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:42)
at org.apache.spark.scheduler.Task.run(Task.scala:90)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:253)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Locked ownable synchronizers:
- <0x00000002c5910ba8> (a java.util.concurrent.ThreadPoolExecutor$Worker)
{noformat}
From the jstack info, we can see it hang-up when do ConvertToUnsafe, call iter.hastNext
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