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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2013/12/05 04:18:26 UTC

Build failed in Jenkins: ctakes-trunk-compiletest #458

See <https://builds.apache.org/job/ctakes-trunk-compiletest/458/changes>

Changes:

[chenpei] CTAKES-200 - Update Test Case for new sectionizer

------------------------------------------
[...truncated 5134 lines...]
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DurationFSM.java>:[169,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.Set
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DurationFSM.java>:[170,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.Set
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DurationFSM.java>:[171,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.Set
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/fsm/machines/elements/DurationFSM.java>:[172,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.Set
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-drug-ner ---
Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-drug-ner ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-drug-ner ---
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/main/resources/org/apache/ctakes/drugner/types/TypeSystem.xml'.>
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.ChunkAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.ChunkAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DecimalStrengthAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DecimalStrengthAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DosagesAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DosagesAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DrugChangeStatusAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DrugMentionAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DrugMentionAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DurationAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.DurationAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FormAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FormAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FractionStrengthAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FractionStrengthAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FrequencyAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FrequencyAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FrequencyUnitAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.FrequencyUnitAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.RangeStrengthAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.RangeStrengthAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.RouteAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.RouteAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.StrengthAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.StrengthAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.StrengthUnitAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.StrengthUnitAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.SubSectionAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.SubSectionAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.SuffixStrengthAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.drugner.type.SuffixStrengthAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-drug-ner ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-drug-ner ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-drug-ner ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-drug-ner ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-drug-ner/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Resources side-effect 3.1.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-side-effect-res ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-side-effect-res ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-side-effect-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 6 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-side-effect-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-side-effect-res ---
[INFO] 
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-side-effect-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 6 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-side-effect-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-side-effect-res ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect-res/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-side-effect-res ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-side-effect-res ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect-res/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Side Effects 3.1.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-side-effect ---
[INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect/target>
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [34.770s]
[INFO] Apache cTAKES common type system .................. SUCCESS [21.645s]
[INFO] Apache cTAKES utils ............................... SUCCESS [13.589s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [10.712s]
[INFO] Apache cTAKES core ................................ SUCCESS [40.106s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [11.876s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [24.178s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [8.638s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [14.134s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [13.856s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [7.505s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [40.672s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [28.857s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [10.185s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [32.672s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [8.660s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [11.268s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [7.576s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [11.218s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [5.750s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [8.077s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [11.244s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [52.252s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [17.820s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [14.176s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [7.759s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [12.428s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [6.383s]
[INFO] Apache cTAKES Side Effects ........................ FAILURE [11.954s]
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources pad-term-spotter-res ...... SKIPPED
[INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2:33:58.942s
[INFO] Finished at: Thu Dec 05 02:13:52 UTC 2013
[INFO] Final Memory: 33M/154M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data[ERROR] Failed to execute goal org.apache.maven.plugins:maven-clean-plugin:2.4.1:clean (default-clean) on project ctakes-side-effect: Failed to clean project: Failed to delete /home/hudson/jenkins-slave/workspace/ctakes-trunk-compiletest/ctakes-side-effect/target/generated-sources/jcasgen/org/apache/ctakes/typesystem/type/relation/ManifestationOfTextRelation_Type.java -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :ctakes-side-effect

Sending e-mails to: notifications@ctakes.apache.org null@apache.org pei@peistation.com
Sending e-mails to: notifications@ctakes.apache.org null@apache.org
channel stopped

Jenkins build is back to normal : ctakes-trunk-compiletest #459

Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/459/changes>