You are viewing a plain text version of this content. The canonical link for it is here.
Posted to user@hbase.apache.org by "Taylor, Ronald C" <ro...@pnl.gov> on 2009/04/04 01:35:37 UTC
Still need help with data upload into HBase
Hello folks,
I have just tried using Ryan's doCommit() method for my bulk upload into
one Hbase table. No luck. I still start to get errors around row
160,000. On-screen, the program starts to generate error msgs like so:
...
INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 8
time(s).
Apr 3, 2009 2:39:52 PM
org.apache.hadoop.hbase.ipc.HBaseClient$Connection
handleConnectionFailure
INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 9
time(s).
Apr 3, 2009 2:39:57 PM
org.apache.hadoop.hbase.ipc.HBaseClient$Connection
handleConnectionFailure
INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 0
time(s).
Apr 3, 2009 2:39:58 PM
org.apache.hadoop.hbase.ipc.HBaseClient$Connection
handleConnectionFailure
INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 1
time(s).
...
In regard to log file information, I have appended at bottom some of the
output from my hbase-<user>-master-<machine>.log file, at the place
where it looks to me like things might have started to go wrong. Several
questions:
1) Is there any readily apparent cause for such a
HBaseClient$Connection handleConnectionFailure to occur in a Hbase
installation configured on a Linux desktop to work in the
pseudo-distributed operation mode? From my understanding, even importing
~200,000 rows (each row being filled with info for ten columns) is a
minimal data set for Hbase, and upload should not be failing like this.
FYI - minimal changes were made to the Hbase default settings in the
Hbase ../conf/ config files when I installed Hbase 0.19.0. I have one
entry in hbase-env.sh, to set JAVA_HOME, and one property entry in
hbase-site.xml, to set the hbase.rootdir.
2) My Linux box has about 3 Gb of memory. I left the HADOOP_HEAP and
HBASE_HEAP sizes at their default values, which I understand are 1000Mb
each. Should I have changed either value?
3) I left the dfs.replication value at the default of "3" in the
hadoop-site.xml file, for my test of pseudo-distributed operation.
Should I have changed that to "1", for operation on my single machine?
Downsizing to "1" would appear to me to negate trying out Hadoop in the
pseudo-distributed operation mode, so I left the value "as is", but did
I get this wrong?
4) In the log output below, you can see that Hbase starts to block and
then unblock updates to my one Hbase table (called the
"ppInteractionTable", for protein-protein interaction table). A little
later, a msg says that the ppInteractionTable has been closed. At this
point, my program has *not* issued a command to close the table - that
only happens at the end of the program. So - why is this happening?
Also, near the end of my log extract, I get a different error msg:
NotReplicatedYetException. I have no idea what that means. Actually, I
don't really have a grasp yet on what any of these error msgs is
supposed to tell us. So - once again, any help would be much
appreciated.
Ron
___________________________________________
Ronald Taylor, Ph.D.
Computational Biology & Bioinformatics Group
Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999, MSIN K7-90
Richland, WA 99352 USA
Office: 509-372-6568
Email: ronald.taylor@pnl.gov
www.pnl.gov
-----Original Message-----
From: Taylor, Ronald C
Sent: Tuesday, March 31, 2009 5:48 PM
To: 'hbase-user@hadoop.apache.org'
Cc: Taylor, Ronald C
Subject: Novice Hbase user needs help with data upload - gets a
RetriesExhaustedException, followed by NoServerForRegionException
Hello folks,
This is my first msg to the list - I just joined today, and I am a
novice Hadoop/HBase programmer. I have a question:
I have written a Java program to create an HBase table and then enter a
number of rows into the table. The only way I have found so far to do
this is to enter each row one-by-one, creating a new BatchUpdate
updateObj for each row, doing about ten updateObj.put()'s to add the
column data, and then doing a tableObj.commit(updateObj). There's
probably a more efficient way (happy to hear, if so!), but this is what
I'm starting with.
When I do this on input that creates 3000 rows, the program works fine.
When I try this on input that would create 300,000 rows (still
relatively small for an HBase table, I would think), the program
terminates around row 160,000 or so, generating first an
RetriesExhaustedException, followed by NoServerForRegionException. The
HBase server crashes, and I have to restart it. The Hadoop server
appears to remain OK and does not need restarting.
Can anybody give me any guidance? I presume that I might need to adjust
some setting for larger input in the HBase and/or Hadoop config files.
At present, I am using default settings. I have installed Hadoop 0.19.0
and HBase 0.19.0 in the "pseudo" cluster mode on a single machine, my
Red Hat Linux desktop, which has 3 Gb RAM.
Any help / suggestions would be much appreciated.
Cheers,
Ron Taylor
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
2009-04-03 14:31:52,457 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
-ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:32:20,915 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238784767897, entries=100007. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794340913
2009-04-03 14:32:25,092 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 2 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:32:25,108 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 2 on 60383'
2009-04-03 14:32:32,203 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,,1238785658133
2009-04-03 14:32:32,220 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794080626, entries=107693. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794352207
2009-04-03 14:32:32,880 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new compressor
2009-04-03 14:32:37,220 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 4 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:32:39,113 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 4 on 60383'
2009-04-03 14:32:47,106 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 1 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:32:48,283 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scan of 1 row(s) of meta region {regionname:
.META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
All 1 .META. region(s) scanned
2009-04-03 14:32:49,322 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,,1238785658133 in 17sec
2009-04-03 14:32:49,322 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,,1238785658133
2009-04-03 14:32:52,450 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:32:52,455 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
-ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:32:52,592 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 1 on 60383'
2009-04-03 14:32:52,608 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794340913, entries=111257. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794372604
2009-04-03 14:32:55,442 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 5 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:32:56,617 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 5 on 60383'
2009-04-03 14:32:59,118 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,,1238785658133 in 9sec
2009-04-03 14:32:59,118 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,,1238785658133
2009-04-03 14:33:09,589 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 6 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:33:10,814 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 6 on 60383'
2009-04-03 14:33:14,925 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 3 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:33:18,917 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 3 on 60383'
2009-04-03 14:33:19,060 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794352207, entries=142751. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794398986
2009-04-03 14:33:22,133 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 7 on 60383' on region ppInteractionTable,,1238785658133:
Memcache size 128.0m is >= than blocking 128.0m size
2009-04-03 14:33:24,871 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,,1238785658133 in 25sec
2009-04-03 14:33:24,871 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
ppInteractionTable,,1238785658133
2009-04-03 14:33:25,784 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,,1238785658133 'IPC Server handler 7 on 60383'
2009-04-03 14:33:27,648 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,,1238785658133
2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,103 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,109 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,145 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,150 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,194 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:28,212 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,,1238794404875/1028128493 available
2009-04-03 14:33:28,214 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,,1238794404875
2009-04-03 14:33:28,849 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
2009-04-03 14:33:28,850 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:33:29,262 INFO
org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
META updated, and report to master all successful. Old region=REGION =>
{NAME => 'ppInteractionTable,,1238785658133', STARTKEY => '', ENDKEY =>
'', ENCODED => 1731079509, OFFLINE => true, SPLIT => true, TABLE =>
{{NAME => 'ppInteractionTable', IS_ROOT => 'false', IS_META => 'false',
FAMILIES => [{NAME => 'edgeCharacteristics', BLOOMFILTER => 'false',
COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL =>
'-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1',
BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH
=> '2147483647', TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE =>
'false'}, {NAME => 'protein2', BLOOMFILTER => 'false', COMPRESSION =>
'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY
=> 'false', BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
ppInteractionTable,,1238794404875,
ppInteractionTable,RPA0221_RPA3739,1238794404875. Split took 4sec
2009-04-03 14:33:30,894 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
ppInteractionTable,,1238785658133: ppInteractionTable,,1238785658133
split; daughters: ppInteractionTable,,1238794404875,
ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
2009-04-03 14:33:30,894 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,RPA0221_RPA3739,1238794404875 to the only server
127.0.0.1:60383
2009-04-03 14:33:30,899 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,,1238794404875 to the only server 127.0.0.1:60383
2009-04-03 14:33:30,900 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:33:30,900 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,,1238794404875
2009-04-03 14:33:30,900 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:33:31,038 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
2009-04-03 14:33:31,038 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,,1238794404875
2009-04-03 14:33:31,050 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,088 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,102 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,118 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,125 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,284 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:33:31,301 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,,1238794404875/1028128493 available
2009-04-03 14:33:33,945 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
2009-04-03 14:33:33,945 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN: ppInteractionTable,,1238794404875 from
127.0.0.1:60383
2009-04-03 14:33:33,945 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
2009-04-03 14:33:33,950 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,,1238794404875 from 127.0.0.1:60383
2009-04-03 14:33:33,951 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,RPA0221_RPA3739,1238794404875 open on 127.0.0.1:60383
2009-04-03 14:33:33,951 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
ppInteractionTable,RPA0221_RPA3739,1238794404875 in region .META.,,1
with startcode 1238784766938 and server 127.0.0.1:60383
2009-04-03 14:33:33,952 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,,1238794404875 open on 127.0.0.1:60383
2009-04-03 14:33:33,952 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
ppInteractionTable,,1238794404875 in region .META.,,1 with startcode
1238784766938 and server 127.0.0.1:60383
2009-04-03 14:33:47,523 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 16sec
2009-04-03 14:33:47,523 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,,1238794404875
2009-04-03 14:33:48,327 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scan of 3 row(s) of meta region {regionname:
.META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
All 1 .META. region(s) scanned
2009-04-03 14:33:49,883 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 2 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:33:52,169 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 2 on 60383'
2009-04-03 14:33:52,240 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794372604, entries=106433. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794432177
2009-04-03 14:33:52,573 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:33:53,030 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
-ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:33:56,586 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 6 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:33:58,020 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 6 on 60383'
2009-04-03 14:34:00,413 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 1 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:03,495 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 1 on 60383'
2009-04-03 14:34:07,634 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 2 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:12,822 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 2 on 60383'
2009-04-03 14:34:12,828 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794398986, entries=106329. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794452826
2009-04-03 14:34:12,895 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,,1238794404875 in 25sec
2009-04-03 14:34:12,895 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:34:15,618 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 4 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:17,141 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 4 on 60383'
2009-04-03 14:34:22,448 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 5 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:22,515 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 5 on 60383'
2009-04-03 14:34:26,808 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 4 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:28,566 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 4 on 60383'
2009-04-03 14:34:32,356 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 3 on 60383' on region
ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:33,387 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 20sec
2009-04-03 14:34:33,388 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:34:33,552 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
handler 3 on 60383'
2009-04-03 14:34:33,556 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794432177, entries=142311. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794473554
2009-04-03 14:34:35,548 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0221_RPA3739,1238794404875
2009-04-03 14:34:36,458 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
2009-04-03 14:34:36,461 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0221_RPA3739,1238794473392
2009-04-03 14:34:36,655 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
2009-04-03 14:34:36,656 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:34:36,662 INFO
org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
META updated, and report to master all successful. Old region=REGION =>
{NAME => 'ppInteractionTable,RPA0221_RPA3739,1238794404875', STARTKEY =>
'RPA0221_RPA3739', ENDKEY => '', ENCODED => 2029769324, OFFLINE => true,
SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
'false', IS_META => 'false', FAMILIES => [{NAME =>
'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
'3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
ppInteractionTable,RPA0221_RPA3739,1238794473392,
ppInteractionTable,RPA0358_RPA0285,1238794473392. Split took 3sec
2009-04-03 14:34:37,182 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
ppInteractionTable,RPA0221_RPA3739,1238794404875:
ppInteractionTable,RPA0221_RPA3739,1238794404875 split; daughters:
ppInteractionTable,RPA0221_RPA3739,1238794473392,
ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
2009-04-03 14:34:37,182 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,RPA0221_RPA3739,1238794473392 to the only server
127.0.0.1:60383
2009-04-03 14:34:37,182 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,RPA0358_RPA0285,1238794473392 to the only server
127.0.0.1:60383
2009-04-03 14:34:37,183 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794473392
2009-04-03 14:34:37,183 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:34:37,183 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794473392
2009-04-03 14:34:37,331 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
2009-04-03 14:34:37,331 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:34:37,331 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,RPA0221_RPA3739,1238794473392
2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,445 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,455 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,488 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,591 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,595 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,600 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,606 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,624 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:34:37,625 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
2009-04-03 14:34:40,202 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
2009-04-03 14:34:40,202 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
2009-04-03 14:34:40,202 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
2009-04-03 14:34:40,202 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
2009-04-03 14:34:40,203 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,RPA0221_RPA3739,1238794473392 open on 127.0.0.1:60383
2009-04-03 14:34:40,203 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
ppInteractionTable,RPA0221_RPA3739,1238794473392 in region .META.,,1
with startcode 1238784766938 and server 127.0.0.1:60383
2009-04-03 14:34:40,203 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,RPA0358_RPA0285,1238794473392 open on 127.0.0.1:60383
2009-04-03 14:34:40,203 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
ppInteractionTable,RPA0358_RPA0285,1238794473392 in region .META.,,1
with startcode 1238784766938 and server 127.0.0.1:60383
2009-04-03 14:34:48,336 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:34:49,001 INFO org.apache.hadoop.hbase.master.BaseScanner:
Deleting region ppInteractionTable,,1238785658133 because daughter
splits no longer hold references
2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scan of 5 row(s) of meta region {regionname:
.META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
All 1 .META. region(s) scanned
2009-04-03 14:34:52,582 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:34:52,916 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 9 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:34:53,322 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
-ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:34:53,852 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,RPA0221_RPA3739,1238794473392 in 16sec
2009-04-03 14:34:53,852 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:34:59,217 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:34:59,621 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:00,024 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:00,426 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:00,828 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:01,230 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:01,634 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:01,936 INFO org.apache.hadoop.hdfs.DFSClient:
org.apache.hadoop.ipc.RemoteException:
org.apache.hadoop.hdfs.server.namenode.NotReplicatedYetException: Not
replicated
yet:/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfi
les/2075053806171367540/data
at
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(F
SNamesystem.java:1256)
at
org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:3
51)
at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:452)
at org.apache.hadoop.ipc.Server$Handler.run(Server.java:892)
at org.apache.hadoop.ipc.Client.call(Client.java:696)
at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:216)
at $Proxy0.addBlock(Unknown Source)
at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvo
cationHandler.java:82)
at
org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocation
Handler.java:59)
at $Proxy0.addBlock(Unknown Source)
at
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DF
SClient.java:2815)
at
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(D
FSClient.java:2697)
at
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.j
ava:1997)
at
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSCli
ent.java:2183)
2009-04-03 14:35:01,936 WARN org.apache.hadoop.hdfs.DFSClient:
NotReplicatedYetException sleeping
/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfiles/
2075053806171367540/data retries left 4
2009-04-03 14:35:02,036 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:02,446 INFO org.apache.hadoop.hdfs.DFSClient: Could not
complete file
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
2278/data retrying...
2009-04-03 14:35:03,628 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 9 on 60383'
2009-04-03 14:35:08,546 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 6 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:10,059 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 6 on 60383'
2009-04-03 14:35:13,203 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 7 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:19,712 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 7 on 60383'
2009-04-03 14:35:23,969 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 0 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:24,415 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 0 on 60383'
2009-04-03 14:35:24,419 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794452826, entries=177752. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794524418
2009-04-03 14:35:35,707 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 3 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:39,253 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 3 on 60383'
2009-04-03 14:35:43,600 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 6 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:45,439 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 6 on 60383'
2009-04-03 14:35:48,342 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:35:48,503 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.metaScanner scan of 4 row(s) of meta region {regionname:
.META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:35:48,504 INFO org.apache.hadoop.hbase.master.BaseScanner:
All 1 .META. region(s) scanned
2009-04-03 14:35:49,897 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
Server handler 3 on 60383' on region
ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
is >= than blocking 128.0m size
2009-04-03 14:35:52,591 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
startKey: <>, server: 127.0.0.1:60383}
2009-04-03 14:35:52,689 INFO org.apache.hadoop.hbase.master.BaseScanner:
RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
-ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
2009-04-03 14:35:52,843 INFO
org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
region ppInteractionTable,RPA0358_RPA0285,1238794473392 in 58sec
2009-04-03 14:35:52,843 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:35:52,977 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
handler 3 on 60383'
2009-04-03 14:35:55,075 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0358_RPA0285,1238794473392
2009-04-03 14:35:55,082 INFO org.apache.hadoop.hbase.regionserver.HLog:
Closed
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
.1238794473554, entries=141994. New log writer:
/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794555072
2009-04-03 14:35:56,047 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
2009-04-03 14:35:56,050 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0358_RPA0285,1238794552845
2009-04-03 14:35:56,224 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
2009-04-03 14:35:56,225 INFO
org.apache.hadoop.hbase.regionserver.HRegion: Closed
ppInteractionTable,RPA0741_RPA0715,1238794552845
2009-04-03 14:35:56,227 INFO
org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
META updated, and report to master all successful. Old region=REGION =>
{NAME => 'ppInteractionTable,RPA0358_RPA0285,1238794473392', STARTKEY =>
'RPA0358_RPA0285', ENDKEY => '', ENCODED => 1780004491, OFFLINE => true,
SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
'false', IS_META => 'false', FAMILIES => [{NAME =>
'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
'3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
ppInteractionTable,RPA0358_RPA0285,1238794552845,
ppInteractionTable,RPA0741_RPA0715,1238794552845. Split took 3sec
2009-04-03 14:35:58,206 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
ppInteractionTable,RPA0358_RPA0285,1238794473392:
ppInteractionTable,RPA0358_RPA0285,1238794473392 split; daughters:
ppInteractionTable,RPA0358_RPA0285,1238794552845,
ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
2009-04-03 14:35:58,206 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,RPA0358_RPA0285,1238794552845 to the only server
127.0.0.1:60383
2009-04-03 14:35:58,207 INFO
org.apache.hadoop.hbase.master.RegionManager: assigning region
ppInteractionTable,RPA0741_RPA0715,1238794552845 to the only server
127.0.0.1:60383
2009-04-03 14:35:58,207 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794552845
2009-04-03 14:35:58,207 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
ppInteractionTable,RPA0741_RPA0715,1238794552845
2009-04-03 14:35:58,207 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794552845
2009-04-03 14:35:58,366 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
2009-04-03 14:35:58,367 INFO
org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
MSG_REGION_OPEN: ppInteractionTable,RPA0741_RPA0715,1238794552845
2009-04-03 14:35:58,367 INFO
org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
region ppInteractionTable,RPA0358_RPA0285,1238794552845
2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,567 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,579 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,595 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,605 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,610 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
Got brand-new decompressor
2009-04-03 14:35:58,615 INFO
org.apache.hadoop.hbase.regionserver.HRegion: region
ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
2009-04-03 14:36:01,234 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
2009-04-03 14:36:01,234 INFO
org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_PROCESS_OPEN:
ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
2009-04-03 14:36:01,234 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
2009-04-03 14:36:01,235 INFO
org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
2009-04-03 14:36:01,235 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,RPA0358_RPA0285,1238794552845 open on 127.0.0.1:60383
2009-04-03 14:36:01,235 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
ppInteractionTable,RPA0358_RPA0285,1238794552845 in region .META.,,1
with startcode 1238784766938 and server 127.0.0.1:60383
2009-04-03 14:36:01,236 INFO
org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
ppInteractionTable,RPA0741_RPA0715,1238794552845 open on 127.0.0.1:60383
Re: Still need help with data upload into HBase
Posted by Ryan Rawson <ry...@gmail.com>.
Hey,
File handle - yes... there was a FAQ and/or getting started which talks
about upping lots of limits.
I have these set in my hadoop-site.xml (that is read by datanode):
<property>
<name>dfs.datanode.max.xcievers</name>
<value>2047</value>
</property>
<property>
<name>dfs.datanode.handler.count</name>
<value>10</value>
</property>
I should probably set the datanode.handler.count higher.
Don't forget to toss a reasonable amount of ram at hdfs... not sure what
that is exactly, but -Xmx1000m wouldn't hurt.
On Fri, Apr 3, 2009 at 5:44 PM, Taylor, Ronald C <ro...@pnl.gov>wrote:
>
> Hi Ryan,
>
> Thanks for the info. Re checking the Hadoop datanode log file: I just
> did so, and found a "too many open files" error. Checking the Hbase FAQ,
> I see that I should drastically bump up the file handle limit. So I will
> give that a try.
>
> Question: what does the xciver variable do? My hadoop-site.xml file does
> not contain any entry for such a var. (Nothing reported in the datalog
> file either with the word "xciver".)
>
> Re using the local file system: well, as soon as I load a nice data set
> loaded in, I'm starting a demo project manipulating it for our Env
> Molecular Sciences Lab (EMSL), a DOE Nat User Facility. And I'm supposed
> to be doing the manipulating using MapReduce programs, to show the
> usefulness of such an approach. So I need Hadoop and the HDFS. And so I
> would prefer to keep using Hbase on top of Hadoop, rather than the local
> Linux file system. Hopefully the "small HDFS clusters" issues you
> mention are survivable. Eventually, some of this programming might wind
> up on Chinook, our 160 Teraflop supercomputer cluster, but that's a ways
> down the road. I'm starting on my Linux desktop.
>
> I'll try bumping up the file handle limit, restart Hadoop and Hbase, and
> see what happens.
> Ron
>
> ___________________________________________
> Ronald Taylor, Ph.D.
> Computational Biology & Bioinformatics Group
> Pacific Northwest National Laboratory
> 902 Battelle Boulevard
> P.O. Box 999, MSIN K7-90
> Richland, WA 99352 USA
> Office: 509-372-6568
> Email: ronald.taylor@pnl.gov
> www.pnl.gov
>
>
> -----Original Message-----
> From: Ryan Rawson [mailto:ryanobjc@gmail.com]
> Sent: Friday, April 03, 2009 5:08 PM
> To: hbase-user@hadoop.apache.org
> Subject: Re: Still need help with data upload into HBase
>
> Hey,
>
> Can you check the datanode logs? You might be running into the dreaded
> xciver limit :-(
>
> try upping the xciver in hadoop-site.xml... i run at 2048.
>
> -ryan
>
> -----Original Message-----
> From: Ryan Rawson [mailto:ryanobjc@gmail.com]
> Sent: Friday, April 03, 2009 5:13 PM
> To: hbase-user@hadoop.apache.org
> Subject: Re: Still need help with data upload into HBase
>
> Non replicated yet is probably what you think - HDFS hasnt place blocks
> on
> more nodes yet. This could be due to the pseudo distributed nature of
> your
> set-up. I'm not familiar with that configuration, so I can't really say
> more.
>
> If you only have 1 machine, you might as well just go with local files.
> The
> HDFS gets you distributed replication, but until you have many machines,
> it
> won't buy you anything and only cause problems, since small HDFS
> clusters
> are known to have issues.
>
> Good luck (again!)
> -ryan
>
> On Fri, Apr 3, 2009 at 5:07 PM, Ryan Rawson <ry...@gmail.com> wrote:
>
> > Hey,
> >
> > Can you check the datanode logs? You might be running into the
> dreaded
> > xciver limit :-(
> >
> > try upping the xciver in hadoop-site.xml... i run at 2048.
> >
> > -ryan
> >
> >
> > On Fri, Apr 3, 2009 at 4:35 PM, Taylor, Ronald C
> <ro...@pnl.gov>wrote:
> >
> >>
> >> Hello folks,
> >>
> >> I have just tried using Ryan's doCommit() method for my bulk upload
> into
> >> one Hbase table. No luck. I still start to get errors around row
> >> 160,000. On-screen, the program starts to generate error msgs like
> so:
> >> ...
> >> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 8
> >> time(s).
> >> Apr 3, 2009 2:39:52 PM
> >> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> >> handleConnectionFailure
> >> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 9
> >> time(s).
> >> Apr 3, 2009 2:39:57 PM
> >> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> >> handleConnectionFailure
> >> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 0
> >> time(s).
> >> Apr 3, 2009 2:39:58 PM
> >> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> >> handleConnectionFailure
> >> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 1
> >> time(s).
> >> ...
> >> In regard to log file information, I have appended at bottom some of
> the
> >> output from my hbase-<user>-master-<machine>.log file, at the place
> >> where it looks to me like things might have started to go wrong.
> Several
> >> questions:
> >>
> >> 1) Is there any readily apparent cause for such a
> >> HBaseClient$Connection handleConnectionFailure to occur in a Hbase
> >> installation configured on a Linux desktop to work in the
> >> pseudo-distributed operation mode? From my understanding, even
> importing
> >> ~200,000 rows (each row being filled with info for ten columns) is a
> >> minimal data set for Hbase, and upload should not be failing like
> this.
> >>
> >> FYI - minimal changes were made to the Hbase default settings in the
> >> Hbase ../conf/ config files when I installed Hbase 0.19.0. I have one
> >> entry in hbase-env.sh, to set JAVA_HOME, and one property entry in
> >> hbase-site.xml, to set the hbase.rootdir.
> >>
> >> 2) My Linux box has about 3 Gb of memory. I left the HADOOP_HEAP and
> >> HBASE_HEAP sizes at their default values, which I understand are
> 1000Mb
> >> each. Should I have changed either value?
> >>
> >> 3) I left the dfs.replication value at the default of "3" in the
> >> hadoop-site.xml file, for my test of pseudo-distributed operation.
> >> Should I have changed that to "1", for operation on my single
> machine?
> >> Downsizing to "1" would appear to me to negate trying out Hadoop in
> the
> >> pseudo-distributed operation mode, so I left the value "as is", but
> did
> >> I get this wrong?
> >>
> >> 4) In the log output below, you can see that Hbase starts to block
> and
> >> then unblock updates to my one Hbase table (called the
> >> "ppInteractionTable", for protein-protein interaction table). A
> little
> >> later, a msg says that the ppInteractionTable has been closed. At
> this
> >> point, my program has *not* issued a command to close the table -
> that
> >> only happens at the end of the program. So - why is this happening?
> >>
> >> Also, near the end of my log extract, I get a different error msg:
> >> NotReplicatedYetException. I have no idea what that means. Actually,
> I
> >> don't really have a grasp yet on what any of these error msgs is
> >> supposed to tell us. So - once again, any help would be much
> >> appreciated.
> >>
> >> Ron
> >>
> >> ___________________________________________
> >> Ronald Taylor, Ph.D.
> >> Computational Biology & Bioinformatics Group
> >> Pacific Northwest National Laboratory
> >> 902 Battelle Boulevard
> >> P.O. Box 999, MSIN K7-90
> >> Richland, WA 99352 USA
> >> Office: 509-372-6568
> >> Email: ronald.taylor@pnl.gov
> >> www.pnl.gov
> >>
> >>
> >>
> >> -----Original Message-----
> >> From: Taylor, Ronald C
> >> Sent: Tuesday, March 31, 2009 5:48 PM
> >> To: 'hbase-user@hadoop.apache.org'
> >> Cc: Taylor, Ronald C
> >> Subject: Novice Hbase user needs help with data upload - gets a
> >> RetriesExhaustedException, followed by NoServerForRegionException
> >>
> >>
> >> Hello folks,
> >>
> >> This is my first msg to the list - I just joined today, and I am a
> >> novice Hadoop/HBase programmer. I have a question:
> >>
> >> I have written a Java program to create an HBase table and then enter
> a
> >> number of rows into the table. The only way I have found so far to do
> >> this is to enter each row one-by-one, creating a new BatchUpdate
> >> updateObj for each row, doing about ten updateObj.put()'s to add the
> >> column data, and then doing a tableObj.commit(updateObj). There's
> >> probably a more efficient way (happy to hear, if so!), but this is
> what
> >> I'm starting with.
> >>
> >> When I do this on input that creates 3000 rows, the program works
> fine.
> >> When I try this on input that would create 300,000 rows (still
> >> relatively small for an HBase table, I would think), the program
> >> terminates around row 160,000 or so, generating first an
> >> RetriesExhaustedException, followed by NoServerForRegionException.
> The
> >> HBase server crashes, and I have to restart it. The Hadoop server
> >> appears to remain OK and does not need restarting.
> >>
> >> Can anybody give me any guidance? I presume that I might need to
> adjust
> >> some setting for larger input in the HBase and/or Hadoop config
> files.
> >> At present, I am using default settings. I have installed Hadoop
> 0.19.0
> >> and HBase 0.19.0 in the "pseudo" cluster mode on a single machine, my
> >> Red Hat Linux desktop, which has 3 Gb RAM.
> >>
> >> Any help / suggestions would be much appreciated.
> >>
> >> Cheers,
> >> Ron Taylor
> >>
> >>
> >> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
> >>
> >> 2009-04-03 14:31:52,457 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scan of 1 row(s) of meta region
> {regionname:
> >> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:32:20,915 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238784767897, entries=100007. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794340913
> >>
> >> 2009-04-03 14:32:25,092 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 2 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:32:25,108 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 2 on
> 60383'
> >>
> >> 2009-04-03 14:32:32,203 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,,1238785658133
> >> 2009-04-03 14:32:32,220 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794080626, entries=107693. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794352207
> >> 2009-04-03 14:32:32,880 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new compressor
> >> 2009-04-03 14:32:37,220 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 4 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:32:39,113 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 4 on
> 60383'
> >> 2009-04-03 14:32:47,106 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 1 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:32:48,283 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scanning meta region {regionname:
> .META.,,1,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:32:48,284 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scan of 1 row(s) of meta region
> {regionname:
> >> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:32:48,284 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> All 1 .META. region(s) scanned
> >> 2009-04-03 14:32:49,322 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,,1238785658133 in 17sec
> >> 2009-04-03 14:32:49,322 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,,1238785658133
> >> 2009-04-03 14:32:52,450 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scanning meta region {regionname:
> -ROOT-,,0,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:32:52,455 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scan of 1 row(s) of meta region
> {regionname:
> >> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:32:52,592 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 1 on
> 60383'
> >> 2009-04-03 14:32:52,608 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794340913, entries=111257. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794372604
> >> 2009-04-03 14:32:55,442 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 5 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:32:56,617 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 5 on
> 60383'
> >> 2009-04-03 14:32:59,118 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,,1238785658133 in 9sec
> >> 2009-04-03 14:32:59,118 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,,1238785658133
> >> 2009-04-03 14:33:09,589 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 6 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:33:10,814 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 6 on
> 60383'
> >> 2009-04-03 14:33:14,925 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 3 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:33:18,917 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 3 on
> 60383'
> >> 2009-04-03 14:33:19,060 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794352207, entries=142751. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794398986
> >> 2009-04-03 14:33:22,133 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 7 on 60383' on region
> ppInteractionTable,,1238785658133:
> >> Memcache size 128.0m is >= than blocking 128.0m size
> >> 2009-04-03 14:33:24,871 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,,1238785658133 in 25sec
> >> 2009-04-03 14:33:24,871 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
> region
> >> ppInteractionTable,,1238785658133
> >> 2009-04-03 14:33:25,784 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,,1238785658133 'IPC Server handler 7 on
> 60383'
> >>
> >> 2009-04-03 14:33:27,648 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,,1238785658133
> >>
> >> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,103 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,109 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,145 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,150 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,194 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:28,212 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,,1238794404875/1028128493 available
> >> 2009-04-03 14:33:28,214 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,,1238794404875
> >> 2009-04-03 14:33:28,849 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
> >> 2009-04-03 14:33:28,850 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:33:29,262 INFO
> >> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
> split,
> >> META updated, and report to master all successful. Old region=REGION
> =>
> >> {NAME => 'ppInteractionTable,,1238785658133', STARTKEY => '', ENDKEY
> =>
> >> '', ENCODED => 1731079509, OFFLINE => true, SPLIT => true, TABLE =>
> >> {{NAME => 'ppInteractionTable', IS_ROOT => 'false', IS_META =>
> 'false',
> >> FAMILIES => [{NAME => 'edgeCharacteristics', BLOOMFILTER => 'false',
> >> COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL
> =>
> >> '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
> 'protein1',
> >> BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS => '3',
> LENGTH
> >> => '2147483647', TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE =>
> >> 'false'}, {NAME => 'protein2', BLOOMFILTER => 'false', COMPRESSION =>
> >> 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL => '-1',
> IN_MEMORY
> >> => 'false', BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> >> ppInteractionTable,,1238794404875,
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875. Split took 4sec
> >> 2009-04-03 14:33:30,894 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_SPLIT:
> >> ppInteractionTable,,1238785658133: ppInteractionTable,,1238785658133
> >> split; daughters: ppInteractionTable,,1238794404875,
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> >> 2009-04-03 14:33:30,894 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 to the only server
> >> 127.0.0.1:60383
> >> 2009-04-03 14:33:30,899 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,,1238794404875 to the only server 127.0.0.1:60383
> >> 2009-04-03 14:33:30,900 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:33:30,900 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,,1238794404875
> >> 2009-04-03 14:33:30,900 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:33:31,038 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
> >> 2009-04-03 14:33:31,038 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,,1238794404875
> >> 2009-04-03 14:33:31,050 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,088 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,102 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,118 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,125 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,284 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:33:31,301 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,,1238794404875/1028128493 available
> >> 2009-04-03 14:33:33,945 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> >> 2009-04-03 14:33:33,945 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN: ppInteractionTable,,1238794404875 from
> >> 127.0.0.1:60383
> >> 2009-04-03 14:33:33,945 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> >> 2009-04-03 14:33:33,950 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,,1238794404875 from 127.0.0.1:60383
> >> 2009-04-03 14:33:33,951 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 open on
> 127.0.0.1:60383
> >> 2009-04-03 14:33:33,951 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 in region .META.,,1
> >> with startcode 1238784766938 and server 127.0.0.1:60383
> >> 2009-04-03 14:33:33,952 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,,1238794404875 open on 127.0.0.1:60383
> >> 2009-04-03 14:33:33,952 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> >> ppInteractionTable,,1238794404875 in region .META.,,1 with startcode
> >> 1238784766938 and server 127.0.0.1:60383
> >> 2009-04-03 14:33:47,523 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 16sec
> >> 2009-04-03 14:33:47,523 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,,1238794404875
> >> 2009-04-03 14:33:48,327 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scanning meta region {regionname:
> .META.,,1,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:33:48,646 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scan of 3 row(s) of meta region
> {regionname:
> >> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:33:48,646 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> All 1 .META. region(s) scanned
> >> 2009-04-03 14:33:49,883 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 2 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:33:52,169 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 2 on 60383'
> >> 2009-04-03 14:33:52,240 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794372604, entries=106433. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794432177
> >> 2009-04-03 14:33:52,573 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scanning meta region {regionname:
> -ROOT-,,0,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:33:53,030 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scan of 1 row(s) of meta region
> {regionname:
> >> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:33:56,586 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 6 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:33:58,020 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 6 on 60383'
> >> 2009-04-03 14:34:00,413 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 1 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:03,495 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 1 on 60383'
> >> 2009-04-03 14:34:07,634 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 2 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:12,822 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 2 on 60383'
> >> 2009-04-03 14:34:12,828 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794398986, entries=106329. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794452826
> >> 2009-04-03 14:34:12,895 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,,1238794404875 in 25sec
> >> 2009-04-03 14:34:12,895 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:34:15,618 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 4 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:17,141 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 4 on 60383'
> >> 2009-04-03 14:34:22,448 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 5 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:22,515 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 5 on 60383'
> >> 2009-04-03 14:34:26,808 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 4 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:28,566 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 4 on 60383'
> >> 2009-04-03 14:34:32,356 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 3 on 60383' on region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:33,387 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 20sec
> >> 2009-04-03 14:34:33,388 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
> region
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:34:33,552 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> >> handler 3 on 60383'
> >> 2009-04-03 14:34:33,556 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794432177, entries=142311. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794473554
> >> 2009-04-03 14:34:35,548 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875
> >> 2009-04-03 14:34:36,458 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
> >> 2009-04-03 14:34:36,461 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392
> >> 2009-04-03 14:34:36,655 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
> >> 2009-04-03 14:34:36,656 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:34:36,662 INFO
> >> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
> split,
> >> META updated, and report to master all successful. Old region=REGION
> =>
> >> {NAME => 'ppInteractionTable,RPA0221_RPA3739,1238794404875', STARTKEY
> =>
> >> 'RPA0221_RPA3739', ENDKEY => '', ENCODED => 2029769324, OFFLINE =>
> true,
> >> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
> >> 'false', IS_META => 'false', FAMILIES => [{NAME =>
> >> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
> >> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
> >> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
> >> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH =>
> '2147483647',
> >> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
> >> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS
> =>
> >> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
> >> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392,
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392. Split took 3sec
> >> 2009-04-03 14:34:37,182 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_SPLIT:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875:
> >> ppInteractionTable,RPA0221_RPA3739,1238794404875 split; daughters:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392,
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> >> 2009-04-03 14:34:37,182 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392 to the only server
> >> 127.0.0.1:60383
> >> 2009-04-03 14:34:37,182 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 to the only server
> >> 127.0.0.1:60383
> >> 2009-04-03 14:34:37,183 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392
> >> 2009-04-03 14:34:37,183 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:34:37,183 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794473392
> >> 2009-04-03 14:34:37,331 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
> >> 2009-04-03 14:34:37,331 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:34:37,331 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794473392
> >> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,445 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,455 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,488 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,591 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,595 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,600 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,606 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,624 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:34:37,625 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
> >> 2009-04-03 14:34:40,202 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
> >> 2009-04-03 14:34:40,202 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> >> 2009-04-03 14:34:40,202 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
> >> 2009-04-03 14:34:40,202 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> >> 2009-04-03 14:34:40,203 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392 open on
> 127.0.0.1:60383
> >> 2009-04-03 14:34:40,203 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> >> ppInteractionTable,RPA0221_RPA3739,1238794473392 in region .META.,,1
> >> with startcode 1238784766938 and server 127.0.0.1:60383
> >> 2009-04-03 14:34:40,203 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 open on
> 127.0.0.1:60383
> >> 2009-04-03 14:34:40,203 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 in region .META.,,1
> >> with startcode 1238784766938 and server 127.0.0.1:60383
> >> 2009-04-03 14:34:48,336 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scanning meta region {regionname:
> .META.,,1,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:34:49,001 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> Deleting region ppInteractionTable,,1238785658133 because daughter
> >> splits no longer hold references
> >> 2009-04-03 14:34:50,055 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scan of 5 row(s) of meta region
> {regionname:
> >> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:34:50,055 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> All 1 .META. region(s) scanned
> >> 2009-04-03 14:34:52,582 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scanning meta region {regionname:
> -ROOT-,,0,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:34:52,916 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 9 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:34:53,322 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scan of 1 row(s) of meta region
> {regionname:
> >> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:34:53,852 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,RPA0221_RPA3739,1238794473392 in 16sec
> >> 2009-04-03 14:34:53,852 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:34:59,217 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:34:59,621 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:00,024 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:00,426 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:00,828 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:01,230 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:01,634 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:01,936 INFO org.apache.hadoop.hdfs.DFSClient:
> >> org.apache.hadoop.ipc.RemoteException:
> >> org.apache.hadoop.hdfs.server.namenode.NotReplicatedYetException: Not
> >> replicated
> >>
> yet:/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfi
> >> les/2075053806171367540/data
> >> at
> >>
> org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(F
> >> SNamesystem.java:1256)
> >> at
> >>
> org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:3
> >> 51)
> >> at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown
> Source)
> >> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
> >> Source)
> >> at java.lang.reflect.Method.invoke(Unknown Source)
> >> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:452)
> >> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:892)
> >>
> >> at org.apache.hadoop.ipc.Client.call(Client.java:696)
> >> at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:216)
> >> at $Proxy0.addBlock(Unknown Source)
> >> at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown
> Source)
> >> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
> >> Source)
> >> at java.lang.reflect.Method.invoke(Unknown Source)
> >> at
> >>
> org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvo
> >> cationHandler.java:82)
> >> at
> >>
> org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocation
> >> Handler.java:59)
> >> at $Proxy0.addBlock(Unknown Source)
> >> at
> >>
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DF
> >> SClient.java:2815)
> >> at
> >>
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(D
> >> FSClient.java:2697)
> >> at
> >>
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.j
> >> ava:1997)
> >> at
> >>
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSCli
> >> ent.java:2183)
> >>
> >> 2009-04-03 14:35:01,936 WARN org.apache.hadoop.hdfs.DFSClient:
> >> NotReplicatedYetException sleeping
> >>
> /hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfiles/
> >> 2075053806171367540/data retries left 4
> >> 2009-04-03 14:35:02,036 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:02,446 INFO org.apache.hadoop.hdfs.DFSClient: Could
> not
> >> complete file
> >>
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> >> 2278/data retrying...
> >> 2009-04-03 14:35:03,628 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 9 on 60383'
> >> 2009-04-03 14:35:08,546 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 6 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:10,059 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 6 on 60383'
> >> 2009-04-03 14:35:13,203 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 7 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:19,712 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 7 on 60383'
> >> 2009-04-03 14:35:23,969 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 0 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:24,415 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 0 on 60383'
> >> 2009-04-03 14:35:24,419 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794452826, entries=177752. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794524418
> >> 2009-04-03 14:35:35,707 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 3 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:39,253 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 3 on 60383'
> >> 2009-04-03 14:35:43,600 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 6 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:45,439 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 6 on 60383'
> >> 2009-04-03 14:35:48,342 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scanning meta region {regionname:
> .META.,,1,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:35:48,503 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.metaScanner scan of 4 row(s) of meta region
> {regionname:
> >> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:35:48,504 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> All 1 .META. region(s) scanned
> >> 2009-04-03 14:35:49,897 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
> 'IPC
> >> Server handler 3 on 60383' on region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
> 128.0m
> >> is >= than blocking 128.0m size
> >> 2009-04-03 14:35:52,591 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scanning meta region {regionname:
> -ROOT-,,0,
> >> startKey: <>, server: 127.0.0.1:60383}
> >> 2009-04-03 14:35:52,689 INFO
> org.apache.hadoop.hbase.master.BaseScanner:
> >> RegionManager.rootScanner scan of 1 row(s) of meta region
> {regionname:
> >> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> >> 2009-04-03 14:35:52,843 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 in 58sec
> >> 2009-04-03 14:35:52,843 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
> region
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:35:52,977 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> >> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> >> handler 3 on 60383'
> >> 2009-04-03 14:35:55,075 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392
> >> 2009-04-03 14:35:55,082 INFO
> org.apache.hadoop.hbase.regionserver.HLog:
> >> Closed
> >>
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> >> .1238794473554, entries=141994. New log writer:
> >> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794555072
> >> 2009-04-03 14:35:56,047 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
> >> 2009-04-03 14:35:56,050 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845
> >> 2009-04-03 14:35:56,224 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
> >> 2009-04-03 14:35:56,225 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845
> >> 2009-04-03 14:35:56,227 INFO
> >> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
> split,
> >> META updated, and report to master all successful. Old region=REGION
> =>
> >> {NAME => 'ppInteractionTable,RPA0358_RPA0285,1238794473392', STARTKEY
> =>
> >> 'RPA0358_RPA0285', ENDKEY => '', ENCODED => 1780004491, OFFLINE =>
> true,
> >> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
> >> 'false', IS_META => 'false', FAMILIES => [{NAME =>
> >> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
> >> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
> >> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
> >> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH =>
> '2147483647',
> >> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
> >> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS
> =>
> >> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
> >> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845,
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845. Split took 3sec
> >> 2009-04-03 14:35:58,206 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_SPLIT:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392:
> >> ppInteractionTable,RPA0358_RPA0285,1238794473392 split; daughters:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845,
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> >> 2009-04-03 14:35:58,206 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845 to the only server
> >> 127.0.0.1:60383
> >> 2009-04-03 14:35:58,207 INFO
> >> org.apache.hadoop.hbase.master.RegionManager: assigning region
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845 to the only server
> >> 127.0.0.1:60383
> >> 2009-04-03 14:35:58,207 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845
> >> 2009-04-03 14:35:58,207 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845
> >> 2009-04-03 14:35:58,207 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794552845
> >> 2009-04-03 14:35:58,366 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
> >> 2009-04-03 14:35:58,367 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> >> MSG_REGION_OPEN: ppInteractionTable,RPA0741_RPA0715,1238794552845
> >> 2009-04-03 14:35:58,367 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> >> region ppInteractionTable,RPA0358_RPA0285,1238794552845
> >> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,567 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,579 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,595 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,605 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,610 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> >> Got brand-new decompressor
> >> 2009-04-03 14:35:58,615 INFO
> >> org.apache.hadoop.hbase.regionserver.HRegion: region
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
> >> 2009-04-03 14:36:01,234 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
> >> 2009-04-03 14:36:01,234 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> >> MSG_REPORT_PROCESS_OPEN:
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> >> 2009-04-03 14:36:01,234 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
> >> 2009-04-03 14:36:01,235 INFO
> >> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_OPEN:
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> >> 2009-04-03 14:36:01,235 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845 open on
> 127.0.0.1:60383
> >> 2009-04-03 14:36:01,235 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> >> ppInteractionTable,RPA0358_RPA0285,1238794552845 in region .META.,,1
> >> with startcode 1238784766938 and server 127.0.0.1:60383
> >> 2009-04-03 14:36:01,236 INFO
> >> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> >> ppInteractionTable,RPA0741_RPA0715,1238794552845 open on
> 127.0.0.1:60383
> >>
> >
> >
>
RE: Still need help with data upload into HBase
Posted by "Taylor, Ronald C" <ro...@pnl.gov>.
Hi Ryan,
Thanks for the info. Re checking the Hadoop datanode log file: I just
did so, and found a "too many open files" error. Checking the Hbase FAQ,
I see that I should drastically bump up the file handle limit. So I will
give that a try.
Question: what does the xciver variable do? My hadoop-site.xml file does
not contain any entry for such a var. (Nothing reported in the datalog
file either with the word "xciver".)
Re using the local file system: well, as soon as I load a nice data set
loaded in, I'm starting a demo project manipulating it for our Env
Molecular Sciences Lab (EMSL), a DOE Nat User Facility. And I'm supposed
to be doing the manipulating using MapReduce programs, to show the
usefulness of such an approach. So I need Hadoop and the HDFS. And so I
would prefer to keep using Hbase on top of Hadoop, rather than the local
Linux file system. Hopefully the "small HDFS clusters" issues you
mention are survivable. Eventually, some of this programming might wind
up on Chinook, our 160 Teraflop supercomputer cluster, but that's a ways
down the road. I'm starting on my Linux desktop.
I'll try bumping up the file handle limit, restart Hadoop and Hbase, and
see what happens.
Ron
___________________________________________
Ronald Taylor, Ph.D.
Computational Biology & Bioinformatics Group
Pacific Northwest National Laboratory
902 Battelle Boulevard
P.O. Box 999, MSIN K7-90
Richland, WA 99352 USA
Office: 509-372-6568
Email: ronald.taylor@pnl.gov
www.pnl.gov
-----Original Message-----
From: Ryan Rawson [mailto:ryanobjc@gmail.com]
Sent: Friday, April 03, 2009 5:08 PM
To: hbase-user@hadoop.apache.org
Subject: Re: Still need help with data upload into HBase
Hey,
Can you check the datanode logs? You might be running into the dreaded
xciver limit :-(
try upping the xciver in hadoop-site.xml... i run at 2048.
-ryan
-----Original Message-----
From: Ryan Rawson [mailto:ryanobjc@gmail.com]
Sent: Friday, April 03, 2009 5:13 PM
To: hbase-user@hadoop.apache.org
Subject: Re: Still need help with data upload into HBase
Non replicated yet is probably what you think - HDFS hasnt place blocks
on
more nodes yet. This could be due to the pseudo distributed nature of
your
set-up. I'm not familiar with that configuration, so I can't really say
more.
If you only have 1 machine, you might as well just go with local files.
The
HDFS gets you distributed replication, but until you have many machines,
it
won't buy you anything and only cause problems, since small HDFS
clusters
are known to have issues.
Good luck (again!)
-ryan
On Fri, Apr 3, 2009 at 5:07 PM, Ryan Rawson <ry...@gmail.com> wrote:
> Hey,
>
> Can you check the datanode logs? You might be running into the
dreaded
> xciver limit :-(
>
> try upping the xciver in hadoop-site.xml... i run at 2048.
>
> -ryan
>
>
> On Fri, Apr 3, 2009 at 4:35 PM, Taylor, Ronald C
<ro...@pnl.gov>wrote:
>
>>
>> Hello folks,
>>
>> I have just tried using Ryan's doCommit() method for my bulk upload
into
>> one Hbase table. No luck. I still start to get errors around row
>> 160,000. On-screen, the program starts to generate error msgs like
so:
>> ...
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 8
>> time(s).
>> Apr 3, 2009 2:39:52 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 9
>> time(s).
>> Apr 3, 2009 2:39:57 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 0
>> time(s).
>> Apr 3, 2009 2:39:58 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 1
>> time(s).
>> ...
>> In regard to log file information, I have appended at bottom some of
the
>> output from my hbase-<user>-master-<machine>.log file, at the place
>> where it looks to me like things might have started to go wrong.
Several
>> questions:
>>
>> 1) Is there any readily apparent cause for such a
>> HBaseClient$Connection handleConnectionFailure to occur in a Hbase
>> installation configured on a Linux desktop to work in the
>> pseudo-distributed operation mode? From my understanding, even
importing
>> ~200,000 rows (each row being filled with info for ten columns) is a
>> minimal data set for Hbase, and upload should not be failing like
this.
>>
>> FYI - minimal changes were made to the Hbase default settings in the
>> Hbase ../conf/ config files when I installed Hbase 0.19.0. I have one
>> entry in hbase-env.sh, to set JAVA_HOME, and one property entry in
>> hbase-site.xml, to set the hbase.rootdir.
>>
>> 2) My Linux box has about 3 Gb of memory. I left the HADOOP_HEAP and
>> HBASE_HEAP sizes at their default values, which I understand are
1000Mb
>> each. Should I have changed either value?
>>
>> 3) I left the dfs.replication value at the default of "3" in the
>> hadoop-site.xml file, for my test of pseudo-distributed operation.
>> Should I have changed that to "1", for operation on my single
machine?
>> Downsizing to "1" would appear to me to negate trying out Hadoop in
the
>> pseudo-distributed operation mode, so I left the value "as is", but
did
>> I get this wrong?
>>
>> 4) In the log output below, you can see that Hbase starts to block
and
>> then unblock updates to my one Hbase table (called the
>> "ppInteractionTable", for protein-protein interaction table). A
little
>> later, a msg says that the ppInteractionTable has been closed. At
this
>> point, my program has *not* issued a command to close the table -
that
>> only happens at the end of the program. So - why is this happening?
>>
>> Also, near the end of my log extract, I get a different error msg:
>> NotReplicatedYetException. I have no idea what that means. Actually,
I
>> don't really have a grasp yet on what any of these error msgs is
>> supposed to tell us. So - once again, any help would be much
>> appreciated.
>>
>> Ron
>>
>> ___________________________________________
>> Ronald Taylor, Ph.D.
>> Computational Biology & Bioinformatics Group
>> Pacific Northwest National Laboratory
>> 902 Battelle Boulevard
>> P.O. Box 999, MSIN K7-90
>> Richland, WA 99352 USA
>> Office: 509-372-6568
>> Email: ronald.taylor@pnl.gov
>> www.pnl.gov
>>
>>
>>
>> -----Original Message-----
>> From: Taylor, Ronald C
>> Sent: Tuesday, March 31, 2009 5:48 PM
>> To: 'hbase-user@hadoop.apache.org'
>> Cc: Taylor, Ronald C
>> Subject: Novice Hbase user needs help with data upload - gets a
>> RetriesExhaustedException, followed by NoServerForRegionException
>>
>>
>> Hello folks,
>>
>> This is my first msg to the list - I just joined today, and I am a
>> novice Hadoop/HBase programmer. I have a question:
>>
>> I have written a Java program to create an HBase table and then enter
a
>> number of rows into the table. The only way I have found so far to do
>> this is to enter each row one-by-one, creating a new BatchUpdate
>> updateObj for each row, doing about ten updateObj.put()'s to add the
>> column data, and then doing a tableObj.commit(updateObj). There's
>> probably a more efficient way (happy to hear, if so!), but this is
what
>> I'm starting with.
>>
>> When I do this on input that creates 3000 rows, the program works
fine.
>> When I try this on input that would create 300,000 rows (still
>> relatively small for an HBase table, I would think), the program
>> terminates around row 160,000 or so, generating first an
>> RetriesExhaustedException, followed by NoServerForRegionException.
The
>> HBase server crashes, and I have to restart it. The Hadoop server
>> appears to remain OK and does not need restarting.
>>
>> Can anybody give me any guidance? I presume that I might need to
adjust
>> some setting for larger input in the HBase and/or Hadoop config
files.
>> At present, I am using default settings. I have installed Hadoop
0.19.0
>> and HBase 0.19.0 in the "pseudo" cluster mode on a single machine, my
>> Red Hat Linux desktop, which has 3 Gb RAM.
>>
>> Any help / suggestions would be much appreciated.
>>
>> Cheers,
>> Ron Taylor
>>
>>
>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>
>> 2009-04-03 14:31:52,457 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region
{regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:20,915 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238784767897, entries=100007. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794340913
>>
>> 2009-04-03 14:32:25,092 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 2 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:25,108 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 2 on
60383'
>>
>> 2009-04-03 14:32:32,203 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:32:32,220 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794080626, entries=107693. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794352207
>> 2009-04-03 14:32:32,880 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new compressor
>> 2009-04-03 14:32:37,220 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 4 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:39,113 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 4 on
60383'
>> 2009-04-03 14:32:47,106 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 1 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:48,283 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname:
.META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:32:48,284 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 1 row(s) of meta region
{regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:48,284 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:32:49,322 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 17sec
>> 2009-04-03 14:32:49,322 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:32:52,450 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname:
-ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:32:52,455 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region
{regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:52,592 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 1 on
60383'
>> 2009-04-03 14:32:52,608 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794340913, entries=111257. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794372604
>> 2009-04-03 14:32:55,442 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 5 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:56,617 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 5 on
60383'
>> 2009-04-03 14:32:59,118 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 9sec
>> 2009-04-03 14:32:59,118 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:33:09,589 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 6 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:10,814 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 6 on
60383'
>> 2009-04-03 14:33:14,925 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 3 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:18,917 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 3 on
60383'
>> 2009-04-03 14:33:19,060 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794352207, entries=142751. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794398986
>> 2009-04-03 14:33:22,133 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 7 on 60383' on region
ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:24,871 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 25sec
>> 2009-04-03 14:33:24,871 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
region
>> ppInteractionTable,,1238785658133
>> 2009-04-03 14:33:25,784 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 7 on
60383'
>>
>> 2009-04-03 14:33:27,648 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,,1238785658133
>>
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,103 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,109 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,145 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,150 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,194 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,212 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,,1238794404875/1028128493 available
>> 2009-04-03 14:33:28,214 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:28,849 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
>> 2009-04-03 14:33:28,850 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:29,262 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
split,
>> META updated, and report to master all successful. Old region=REGION
=>
>> {NAME => 'ppInteractionTable,,1238785658133', STARTKEY => '', ENDKEY
=>
>> '', ENCODED => 1731079509, OFFLINE => true, SPLIT => true, TABLE =>
>> {{NAME => 'ppInteractionTable', IS_ROOT => 'false', IS_META =>
'false',
>> FAMILIES => [{NAME => 'edgeCharacteristics', BLOOMFILTER => 'false',
>> COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL
=>
>> '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
'protein1',
>> BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS => '3',
LENGTH
>> => '2147483647', TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE =>
>> 'false'}, {NAME => 'protein2', BLOOMFILTER => 'false', COMPRESSION =>
>> 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL => '-1',
IN_MEMORY
>> => 'false', BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,,1238794404875,
>> ppInteractionTable,RPA0221_RPA3739,1238794404875. Split took 4sec
>> 2009-04-03 14:33:30,894 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_SPLIT:
>> ppInteractionTable,,1238785658133: ppInteractionTable,,1238785658133
>> split; daughters: ppInteractionTable,,1238794404875,
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:30,894 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:33:30,899 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,,1238794404875 to the only server 127.0.0.1:60383
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:31,038 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
>> 2009-04-03 14:33:31,038 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:31,050 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,088 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,102 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,118 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,125 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,284 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,301 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,,1238794404875/1028128493 available
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN: ppInteractionTable,,1238794404875 from
>> 127.0.0.1:60383
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,950 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,951 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 open on
127.0.0.1:60383
>> 2009-04-03 14:33:33,951 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:33:33,952 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,,1238794404875 open on 127.0.0.1:60383
>> 2009-04-03 14:33:33,952 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,,1238794404875 in region .META.,,1 with startcode
>> 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:33:47,523 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 16sec
>> 2009-04-03 14:33:47,523 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:48,327 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname:
.META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:33:48,646 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 3 row(s) of meta region
{regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:33:48,646 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:33:49,883 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 2 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:33:52,169 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 2 on 60383'
>> 2009-04-03 14:33:52,240 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794372604, entries=106433. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794432177
>> 2009-04-03 14:33:52,573 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname:
-ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:33:53,030 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region
{regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:33:56,586 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:33:58,020 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:34:00,413 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 1 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:03,495 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 1 on 60383'
>> 2009-04-03 14:34:07,634 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 2 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:12,822 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 2 on 60383'
>> 2009-04-03 14:34:12,828 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794398986, entries=106329. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794452826
>> 2009-04-03 14:34:12,895 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238794404875 in 25sec
>> 2009-04-03 14:34:12,895 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:15,618 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 4 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:17,141 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 4 on 60383'
>> 2009-04-03 14:34:22,448 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 5 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:22,515 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 5 on 60383'
>> 2009-04-03 14:34:26,808 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 4 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:28,566 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 4 on 60383'
>> 2009-04-03 14:34:32,356 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:33,387 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 20sec
>> 2009-04-03 14:34:33,388 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:33,552 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:34:33,556 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794432177, entries=142311. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794473554
>> 2009-04-03 14:34:35,548 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:36,458 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
>> 2009-04-03 14:34:36,461 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:36,655 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
>> 2009-04-03 14:34:36,656 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:36,662 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
split,
>> META updated, and report to master all successful. Old region=REGION
=>
>> {NAME => 'ppInteractionTable,RPA0221_RPA3739,1238794404875', STARTKEY
=>
>> 'RPA0221_RPA3739', ENDKEY => '', ENCODED => 2029769324, OFFLINE =>
true,
>> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
>> 'false', IS_META => 'false', FAMILIES => [{NAME =>
>> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
>> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
>> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
>> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH =>
'2147483647',
>> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
>> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS
=>
>> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
>> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392,
>> ppInteractionTable,RPA0358_RPA0285,1238794473392. Split took 3sec
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_SPLIT:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 split; daughters:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392,
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,445 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,455 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,488 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,591 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,595 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,606 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,624 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,625 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 open on
127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 open on
127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:34:48,336 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname:
.META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:34:49,001 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> Deleting region ppInteractionTable,,1238785658133 because daughter
>> splits no longer hold references
>> 2009-04-03 14:34:50,055 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 5 row(s) of meta region
{regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:34:50,055 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:34:52,582 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname:
-ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:34:52,916 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 9 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:53,322 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region
{regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:34:53,852 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794473392 in 16sec
>> 2009-04-03 14:34:53,852 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:59,217 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:34:59,621 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,024 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,426 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,828 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,230 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,634 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,936 INFO org.apache.hadoop.hdfs.DFSClient:
>> org.apache.hadoop.ipc.RemoteException:
>> org.apache.hadoop.hdfs.server.namenode.NotReplicatedYetException: Not
>> replicated
>>
yet:/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfi
>> les/2075053806171367540/data
>> at
>>
org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(F
>> SNamesystem.java:1256)
>> at
>>
org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:3
>> 51)
>> at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown
Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>> Source)
>> at java.lang.reflect.Method.invoke(Unknown Source)
>> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:452)
>> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:892)
>>
>> at org.apache.hadoop.ipc.Client.call(Client.java:696)
>> at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:216)
>> at $Proxy0.addBlock(Unknown Source)
>> at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown
Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>> Source)
>> at java.lang.reflect.Method.invoke(Unknown Source)
>> at
>>
org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvo
>> cationHandler.java:82)
>> at
>>
org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocation
>> Handler.java:59)
>> at $Proxy0.addBlock(Unknown Source)
>> at
>>
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DF
>> SClient.java:2815)
>> at
>>
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(D
>> FSClient.java:2697)
>> at
>>
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.j
>> ava:1997)
>> at
>>
org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSCli
>> ent.java:2183)
>>
>> 2009-04-03 14:35:01,936 WARN org.apache.hadoop.hdfs.DFSClient:
>> NotReplicatedYetException sleeping
>>
/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfiles/
>> 2075053806171367540/data retries left 4
>> 2009-04-03 14:35:02,036 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:02,446 INFO org.apache.hadoop.hdfs.DFSClient: Could
not
>> complete file
>>
/hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:03,628 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 9 on 60383'
>> 2009-04-03 14:35:08,546 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:10,059 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:35:13,203 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 7 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:19,712 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 7 on 60383'
>> 2009-04-03 14:35:23,969 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 0 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:24,415 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 0 on 60383'
>> 2009-04-03 14:35:24,419 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794452826, entries=177752. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794524418
>> 2009-04-03 14:35:35,707 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:39,253 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:35:43,600 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:45,439 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:35:48,342 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname:
.META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:35:48,503 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 4 row(s) of meta region
{regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:35:48,504 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:35:49,897 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for
'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size
128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:52,591 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname:
-ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:35:52,689 INFO
org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region
{regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:35:52,843 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 in 58sec
>> 2009-04-03 14:35:52,843 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of
region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:35:52,977 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:35:55,075 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:35:55,082 INFO
org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>>
hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794473554, entries=141994. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794555072
>> 2009-04-03 14:35:56,047 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
>> 2009-04-03 14:35:56,050 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:56,224 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
>> 2009-04-03 14:35:56,225 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:56,227 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region
split,
>> META updated, and report to master all successful. Old region=REGION
=>
>> {NAME => 'ppInteractionTable,RPA0358_RPA0285,1238794473392', STARTKEY
=>
>> 'RPA0358_RPA0285', ENDKEY => '', ENCODED => 1780004491, OFFLINE =>
true,
>> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
>> 'false', IS_META => 'false', FAMILIES => [{NAME =>
>> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
>> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
>> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
>> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH =>
'2147483647',
>> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
>> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS
=>
>> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
>> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845,
>> ppInteractionTable,RPA0741_RPA0715,1238794552845. Split took 3sec
>> 2009-04-03 14:35:58,206 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_SPLIT:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 split; daughters:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845,
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:35:58,206 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,366 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
>> 2009-04-03 14:35:58,367 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:58,367 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,567 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,579 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,595 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,610 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,615 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 open on
127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:36:01,236 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 open on
127.0.0.1:60383
>>
>
>
Re: Still need help with data upload into HBase
Posted by Ryan Rawson <ry...@gmail.com>.
Non replicated yet is probably what you think - HDFS hasnt place blocks on
more nodes yet. This could be due to the pseudo distributed nature of your
set-up. I'm not familiar with that configuration, so I can't really say
more.
If you only have 1 machine, you might as well just go with local files. The
HDFS gets you distributed replication, but until you have many machines, it
won't buy you anything and only cause problems, since small HDFS clusters
are known to have issues.
Good luck (again!)
-ryan
On Fri, Apr 3, 2009 at 5:07 PM, Ryan Rawson <ry...@gmail.com> wrote:
> Hey,
>
> Can you check the datanode logs? You might be running into the dreaded
> xciver limit :-(
>
> try upping the xciver in hadoop-site.xml... i run at 2048.
>
> -ryan
>
>
> On Fri, Apr 3, 2009 at 4:35 PM, Taylor, Ronald C <ro...@pnl.gov>wrote:
>
>>
>> Hello folks,
>>
>> I have just tried using Ryan's doCommit() method for my bulk upload into
>> one Hbase table. No luck. I still start to get errors around row
>> 160,000. On-screen, the program starts to generate error msgs like so:
>> ...
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 8
>> time(s).
>> Apr 3, 2009 2:39:52 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 9
>> time(s).
>> Apr 3, 2009 2:39:57 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 0
>> time(s).
>> Apr 3, 2009 2:39:58 PM
>> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
>> handleConnectionFailure
>> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 1
>> time(s).
>> ...
>> In regard to log file information, I have appended at bottom some of the
>> output from my hbase-<user>-master-<machine>.log file, at the place
>> where it looks to me like things might have started to go wrong. Several
>> questions:
>>
>> 1) Is there any readily apparent cause for such a
>> HBaseClient$Connection handleConnectionFailure to occur in a Hbase
>> installation configured on a Linux desktop to work in the
>> pseudo-distributed operation mode? From my understanding, even importing
>> ~200,000 rows (each row being filled with info for ten columns) is a
>> minimal data set for Hbase, and upload should not be failing like this.
>>
>> FYI - minimal changes were made to the Hbase default settings in the
>> Hbase ../conf/ config files when I installed Hbase 0.19.0. I have one
>> entry in hbase-env.sh, to set JAVA_HOME, and one property entry in
>> hbase-site.xml, to set the hbase.rootdir.
>>
>> 2) My Linux box has about 3 Gb of memory. I left the HADOOP_HEAP and
>> HBASE_HEAP sizes at their default values, which I understand are 1000Mb
>> each. Should I have changed either value?
>>
>> 3) I left the dfs.replication value at the default of "3" in the
>> hadoop-site.xml file, for my test of pseudo-distributed operation.
>> Should I have changed that to "1", for operation on my single machine?
>> Downsizing to "1" would appear to me to negate trying out Hadoop in the
>> pseudo-distributed operation mode, so I left the value "as is", but did
>> I get this wrong?
>>
>> 4) In the log output below, you can see that Hbase starts to block and
>> then unblock updates to my one Hbase table (called the
>> "ppInteractionTable", for protein-protein interaction table). A little
>> later, a msg says that the ppInteractionTable has been closed. At this
>> point, my program has *not* issued a command to close the table - that
>> only happens at the end of the program. So - why is this happening?
>>
>> Also, near the end of my log extract, I get a different error msg:
>> NotReplicatedYetException. I have no idea what that means. Actually, I
>> don't really have a grasp yet on what any of these error msgs is
>> supposed to tell us. So - once again, any help would be much
>> appreciated.
>>
>> Ron
>>
>> ___________________________________________
>> Ronald Taylor, Ph.D.
>> Computational Biology & Bioinformatics Group
>> Pacific Northwest National Laboratory
>> 902 Battelle Boulevard
>> P.O. Box 999, MSIN K7-90
>> Richland, WA 99352 USA
>> Office: 509-372-6568
>> Email: ronald.taylor@pnl.gov
>> www.pnl.gov
>>
>>
>>
>> -----Original Message-----
>> From: Taylor, Ronald C
>> Sent: Tuesday, March 31, 2009 5:48 PM
>> To: 'hbase-user@hadoop.apache.org'
>> Cc: Taylor, Ronald C
>> Subject: Novice Hbase user needs help with data upload - gets a
>> RetriesExhaustedException, followed by NoServerForRegionException
>>
>>
>> Hello folks,
>>
>> This is my first msg to the list - I just joined today, and I am a
>> novice Hadoop/HBase programmer. I have a question:
>>
>> I have written a Java program to create an HBase table and then enter a
>> number of rows into the table. The only way I have found so far to do
>> this is to enter each row one-by-one, creating a new BatchUpdate
>> updateObj for each row, doing about ten updateObj.put()'s to add the
>> column data, and then doing a tableObj.commit(updateObj). There's
>> probably a more efficient way (happy to hear, if so!), but this is what
>> I'm starting with.
>>
>> When I do this on input that creates 3000 rows, the program works fine.
>> When I try this on input that would create 300,000 rows (still
>> relatively small for an HBase table, I would think), the program
>> terminates around row 160,000 or so, generating first an
>> RetriesExhaustedException, followed by NoServerForRegionException. The
>> HBase server crashes, and I have to restart it. The Hadoop server
>> appears to remain OK and does not need restarting.
>>
>> Can anybody give me any guidance? I presume that I might need to adjust
>> some setting for larger input in the HBase and/or Hadoop config files.
>> At present, I am using default settings. I have installed Hadoop 0.19.0
>> and HBase 0.19.0 in the "pseudo" cluster mode on a single machine, my
>> Red Hat Linux desktop, which has 3 Gb RAM.
>>
>> Any help / suggestions would be much appreciated.
>>
>> Cheers,
>> Ron Taylor
>>
>>
>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>
>> 2009-04-03 14:31:52,457 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:20,915 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238784767897, entries=100007. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794340913
>>
>> 2009-04-03 14:32:25,092 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 2 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:25,108 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 2 on 60383'
>>
>> 2009-04-03 14:32:32,203 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:32:32,220 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794080626, entries=107693. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794352207
>> 2009-04-03 14:32:32,880 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new compressor
>> 2009-04-03 14:32:37,220 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 4 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:39,113 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 4 on 60383'
>> 2009-04-03 14:32:47,106 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 1 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:48,283 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 1 row(s) of meta region {regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:32:49,322 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 17sec
>> 2009-04-03 14:32:49,322 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:32:52,450 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:32:52,455 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:32:52,592 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 1 on 60383'
>> 2009-04-03 14:32:52,608 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794340913, entries=111257. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794372604
>> 2009-04-03 14:32:55,442 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 5 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:32:56,617 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 5 on 60383'
>> 2009-04-03 14:32:59,118 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 9sec
>> 2009-04-03 14:32:59,118 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238785658133
>> 2009-04-03 14:33:09,589 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 6 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:10,814 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 6 on 60383'
>> 2009-04-03 14:33:14,925 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 3 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:18,917 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 3 on 60383'
>> 2009-04-03 14:33:19,060 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794352207, entries=142751. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794398986
>> 2009-04-03 14:33:22,133 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 7 on 60383' on region ppInteractionTable,,1238785658133:
>> Memcache size 128.0m is >= than blocking 128.0m size
>> 2009-04-03 14:33:24,871 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238785658133 in 25sec
>> 2009-04-03 14:33:24,871 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
>> ppInteractionTable,,1238785658133
>> 2009-04-03 14:33:25,784 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,,1238785658133 'IPC Server handler 7 on 60383'
>>
>> 2009-04-03 14:33:27,648 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,,1238785658133
>>
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,103 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,109 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,145 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,150 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,194 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:28,212 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,,1238794404875/1028128493 available
>> 2009-04-03 14:33:28,214 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:28,849 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
>> 2009-04-03 14:33:28,850 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:29,262 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
>> META updated, and report to master all successful. Old region=REGION =>
>> {NAME => 'ppInteractionTable,,1238785658133', STARTKEY => '', ENDKEY =>
>> '', ENCODED => 1731079509, OFFLINE => true, SPLIT => true, TABLE =>
>> {{NAME => 'ppInteractionTable', IS_ROOT => 'false', IS_META => 'false',
>> FAMILIES => [{NAME => 'edgeCharacteristics', BLOOMFILTER => 'false',
>> COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL =>
>> '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1',
>> BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH
>> => '2147483647', TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE =>
>> 'false'}, {NAME => 'protein2', BLOOMFILTER => 'false', COMPRESSION =>
>> 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY
>> => 'false', BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,,1238794404875,
>> ppInteractionTable,RPA0221_RPA3739,1238794404875. Split took 4sec
>> 2009-04-03 14:33:30,894 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
>> ppInteractionTable,,1238785658133: ppInteractionTable,,1238785658133
>> split; daughters: ppInteractionTable,,1238794404875,
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:30,894 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:33:30,899 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,,1238794404875 to the only server 127.0.0.1:60383
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:30,900 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:31,038 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
>> 2009-04-03 14:33:31,038 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:31,050 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,088 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,102 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,118 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,125 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,284 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:33:31,301 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,,1238794404875/1028128493 available
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN: ppInteractionTable,,1238794404875 from
>> 127.0.0.1:60383
>> 2009-04-03 14:33:33,945 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,950 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,,1238794404875 from 127.0.0.1:60383
>> 2009-04-03 14:33:33,951 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 open on 127.0.0.1:60383
>> 2009-04-03 14:33:33,951 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:33:33,952 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,,1238794404875 open on 127.0.0.1:60383
>> 2009-04-03 14:33:33,952 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,,1238794404875 in region .META.,,1 with startcode
>> 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:33:47,523 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 16sec
>> 2009-04-03 14:33:47,523 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,,1238794404875
>> 2009-04-03 14:33:48,327 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 3 row(s) of meta region {regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:33:49,883 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 2 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:33:52,169 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 2 on 60383'
>> 2009-04-03 14:33:52,240 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794372604, entries=106433. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794432177
>> 2009-04-03 14:33:52,573 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:33:53,030 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:33:56,586 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:33:58,020 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:34:00,413 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 1 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:03,495 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 1 on 60383'
>> 2009-04-03 14:34:07,634 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 2 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:12,822 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 2 on 60383'
>> 2009-04-03 14:34:12,828 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794398986, entries=106329. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794452826
>> 2009-04-03 14:34:12,895 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,,1238794404875 in 25sec
>> 2009-04-03 14:34:12,895 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:15,618 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 4 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:17,141 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 4 on 60383'
>> 2009-04-03 14:34:22,448 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 5 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:22,515 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 5 on 60383'
>> 2009-04-03 14:34:26,808 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 4 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:28,566 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 4 on 60383'
>> 2009-04-03 14:34:32,356 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:33,387 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 20sec
>> 2009-04-03 14:34:33,388 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:33,552 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:34:33,556 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794432177, entries=142311. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794473554
>> 2009-04-03 14:34:35,548 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794404875
>> 2009-04-03 14:34:36,458 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
>> 2009-04-03 14:34:36,461 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:36,655 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
>> 2009-04-03 14:34:36,656 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:36,662 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
>> META updated, and report to master all successful. Old region=REGION =>
>> {NAME => 'ppInteractionTable,RPA0221_RPA3739,1238794404875', STARTKEY =>
>> 'RPA0221_RPA3739', ENDKEY => '', ENCODED => 2029769324, OFFLINE => true,
>> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
>> 'false', IS_META => 'false', FAMILIES => [{NAME =>
>> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
>> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
>> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
>> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
>> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
>> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
>> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
>> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392,
>> ppInteractionTable,RPA0358_RPA0285,1238794473392. Split took 3sec
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875:
>> ppInteractionTable,RPA0221_RPA3739,1238794404875 split; daughters:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392,
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:34:37,182 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:37,183 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:37,331 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0221_RPA3739,1238794473392
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,445 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,455 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,488 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,591 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,595 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,606 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,624 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:34:37,625 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,202 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 open on 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0221_RPA3739,1238794473392 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 open on 127.0.0.1:60383
>> 2009-04-03 14:34:40,203 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:34:48,336 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:34:49,001 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> Deleting region ppInteractionTable,,1238785658133 because daughter
>> splits no longer hold references
>> 2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 5 row(s) of meta region {regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:34:52,582 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:34:52,916 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 9 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:34:53,322 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:34:53,852 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0221_RPA3739,1238794473392 in 16sec
>> 2009-04-03 14:34:53,852 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:34:59,217 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:34:59,621 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,024 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,426 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:00,828 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,230 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,634 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:01,936 INFO org.apache.hadoop.hdfs.DFSClient:
>> org.apache.hadoop.ipc.RemoteException:
>> org.apache.hadoop.hdfs.server.namenode.NotReplicatedYetException: Not
>> replicated
>> yet:/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfi
>> les/2075053806171367540/data
>> at
>> org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(F
>> SNamesystem.java:1256)
>> at
>> org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:3
>> 51)
>> at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>> Source)
>> at java.lang.reflect.Method.invoke(Unknown Source)
>> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:452)
>> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:892)
>>
>> at org.apache.hadoop.ipc.Client.call(Client.java:696)
>> at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:216)
>> at $Proxy0.addBlock(Unknown Source)
>> at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
>> Source)
>> at java.lang.reflect.Method.invoke(Unknown Source)
>> at
>> org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvo
>> cationHandler.java:82)
>> at
>> org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocation
>> Handler.java:59)
>> at $Proxy0.addBlock(Unknown Source)
>> at
>> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DF
>> SClient.java:2815)
>> at
>> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(D
>> FSClient.java:2697)
>> at
>> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.j
>> ava:1997)
>> at
>> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSCli
>> ent.java:2183)
>>
>> 2009-04-03 14:35:01,936 WARN org.apache.hadoop.hdfs.DFSClient:
>> NotReplicatedYetException sleeping
>> /hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfiles/
>> 2075053806171367540/data retries left 4
>> 2009-04-03 14:35:02,036 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:02,446 INFO org.apache.hadoop.hdfs.DFSClient: Could not
>> complete file
>> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
>> 2278/data retrying...
>> 2009-04-03 14:35:03,628 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 9 on 60383'
>> 2009-04-03 14:35:08,546 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:10,059 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:35:13,203 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 7 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:19,712 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 7 on 60383'
>> 2009-04-03 14:35:23,969 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 0 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:24,415 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 0 on 60383'
>> 2009-04-03 14:35:24,419 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794452826, entries=177752. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794524418
>> 2009-04-03 14:35:35,707 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:39,253 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:35:43,600 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 6 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:45,439 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 6 on 60383'
>> 2009-04-03 14:35:48,342 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:35:48,503 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.metaScanner scan of 4 row(s) of meta region {regionname:
>> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:35:48,504 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> All 1 .META. region(s) scanned
>> 2009-04-03 14:35:49,897 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
>> Server handler 3 on 60383' on region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
>> is >= than blocking 128.0m size
>> 2009-04-03 14:35:52,591 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
>> startKey: <>, server: 127.0.0.1:60383}
>> 2009-04-03 14:35:52,689 INFO org.apache.hadoop.hbase.master.BaseScanner:
>> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
>> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
>> 2009-04-03 14:35:52,843 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 in 58sec
>> 2009-04-03 14:35:52,843 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:35:52,977 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
>> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
>> handler 3 on 60383'
>> 2009-04-03 14:35:55,075 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794473392
>> 2009-04-03 14:35:55,082 INFO org.apache.hadoop.hbase.regionserver.HLog:
>> Closed
>> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
>> .1238794473554, entries=141994. New log writer:
>> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794555072
>> 2009-04-03 14:35:56,047 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
>> 2009-04-03 14:35:56,050 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:56,224 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
>> 2009-04-03 14:35:56,225 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: Closed
>> ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:56,227 INFO
>> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
>> META updated, and report to master all successful. Old region=REGION =>
>> {NAME => 'ppInteractionTable,RPA0358_RPA0285,1238794473392', STARTKEY =>
>> 'RPA0358_RPA0285', ENDKEY => '', ENCODED => 1780004491, OFFLINE => true,
>> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
>> 'false', IS_META => 'false', FAMILIES => [{NAME =>
>> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
>> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
>> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
>> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
>> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
>> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
>> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
>> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845,
>> ppInteractionTable,RPA0741_RPA0715,1238794552845. Split took 3sec
>> 2009-04-03 14:35:58,206 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392:
>> ppInteractionTable,RPA0358_RPA0285,1238794473392 split; daughters:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845,
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:35:58,206 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.master.RegionManager: assigning region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 to the only server
>> 127.0.0.1:60383
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:58,207 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,366 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
>> 2009-04-03 14:35:58,367 INFO
>> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
>> MSG_REGION_OPEN: ppInteractionTable,RPA0741_RPA0715,1238794552845
>> 2009-04-03 14:35:58,367 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
>> region ppInteractionTable,RPA0358_RPA0285,1238794552845
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,567 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,579 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,595 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,605 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,610 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
>> Got brand-new decompressor
>> 2009-04-03 14:35:58,615 INFO
>> org.apache.hadoop.hbase.regionserver.HRegion: region
>> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received
>> MSG_REPORT_PROCESS_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,234 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 open on 127.0.0.1:60383
>> 2009-04-03 14:36:01,235 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
>> ppInteractionTable,RPA0358_RPA0285,1238794552845 in region .META.,,1
>> with startcode 1238784766938 and server 127.0.0.1:60383
>> 2009-04-03 14:36:01,236 INFO
>> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
>> ppInteractionTable,RPA0741_RPA0715,1238794552845 open on 127.0.0.1:60383
>>
>
>
Re: Still need help with data upload into HBase
Posted by Ryan Rawson <ry...@gmail.com>.
Hey,
Can you check the datanode logs? You might be running into the dreaded
xciver limit :-(
try upping the xciver in hadoop-site.xml... i run at 2048.
-ryan
On Fri, Apr 3, 2009 at 4:35 PM, Taylor, Ronald C <ro...@pnl.gov>wrote:
>
> Hello folks,
>
> I have just tried using Ryan's doCommit() method for my bulk upload into
> one Hbase table. No luck. I still start to get errors around row
> 160,000. On-screen, the program starts to generate error msgs like so:
> ...
> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 8
> time(s).
> Apr 3, 2009 2:39:52 PM
> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> handleConnectionFailure
> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 9
> time(s).
> Apr 3, 2009 2:39:57 PM
> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> handleConnectionFailure
> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 0
> time(s).
> Apr 3, 2009 2:39:58 PM
> org.apache.hadoop.hbase.ipc.HBaseClient$Connection
> handleConnectionFailure
> INFO: Retrying connect to server: /127.0.0.1:60383. Already tried 1
> time(s).
> ...
> In regard to log file information, I have appended at bottom some of the
> output from my hbase-<user>-master-<machine>.log file, at the place
> where it looks to me like things might have started to go wrong. Several
> questions:
>
> 1) Is there any readily apparent cause for such a
> HBaseClient$Connection handleConnectionFailure to occur in a Hbase
> installation configured on a Linux desktop to work in the
> pseudo-distributed operation mode? From my understanding, even importing
> ~200,000 rows (each row being filled with info for ten columns) is a
> minimal data set for Hbase, and upload should not be failing like this.
>
> FYI - minimal changes were made to the Hbase default settings in the
> Hbase ../conf/ config files when I installed Hbase 0.19.0. I have one
> entry in hbase-env.sh, to set JAVA_HOME, and one property entry in
> hbase-site.xml, to set the hbase.rootdir.
>
> 2) My Linux box has about 3 Gb of memory. I left the HADOOP_HEAP and
> HBASE_HEAP sizes at their default values, which I understand are 1000Mb
> each. Should I have changed either value?
>
> 3) I left the dfs.replication value at the default of "3" in the
> hadoop-site.xml file, for my test of pseudo-distributed operation.
> Should I have changed that to "1", for operation on my single machine?
> Downsizing to "1" would appear to me to negate trying out Hadoop in the
> pseudo-distributed operation mode, so I left the value "as is", but did
> I get this wrong?
>
> 4) In the log output below, you can see that Hbase starts to block and
> then unblock updates to my one Hbase table (called the
> "ppInteractionTable", for protein-protein interaction table). A little
> later, a msg says that the ppInteractionTable has been closed. At this
> point, my program has *not* issued a command to close the table - that
> only happens at the end of the program. So - why is this happening?
>
> Also, near the end of my log extract, I get a different error msg:
> NotReplicatedYetException. I have no idea what that means. Actually, I
> don't really have a grasp yet on what any of these error msgs is
> supposed to tell us. So - once again, any help would be much
> appreciated.
>
> Ron
>
> ___________________________________________
> Ronald Taylor, Ph.D.
> Computational Biology & Bioinformatics Group
> Pacific Northwest National Laboratory
> 902 Battelle Boulevard
> P.O. Box 999, MSIN K7-90
> Richland, WA 99352 USA
> Office: 509-372-6568
> Email: ronald.taylor@pnl.gov
> www.pnl.gov
>
>
>
> -----Original Message-----
> From: Taylor, Ronald C
> Sent: Tuesday, March 31, 2009 5:48 PM
> To: 'hbase-user@hadoop.apache.org'
> Cc: Taylor, Ronald C
> Subject: Novice Hbase user needs help with data upload - gets a
> RetriesExhaustedException, followed by NoServerForRegionException
>
>
> Hello folks,
>
> This is my first msg to the list - I just joined today, and I am a
> novice Hadoop/HBase programmer. I have a question:
>
> I have written a Java program to create an HBase table and then enter a
> number of rows into the table. The only way I have found so far to do
> this is to enter each row one-by-one, creating a new BatchUpdate
> updateObj for each row, doing about ten updateObj.put()'s to add the
> column data, and then doing a tableObj.commit(updateObj). There's
> probably a more efficient way (happy to hear, if so!), but this is what
> I'm starting with.
>
> When I do this on input that creates 3000 rows, the program works fine.
> When I try this on input that would create 300,000 rows (still
> relatively small for an HBase table, I would think), the program
> terminates around row 160,000 or so, generating first an
> RetriesExhaustedException, followed by NoServerForRegionException. The
> HBase server crashes, and I have to restart it. The Hadoop server
> appears to remain OK and does not need restarting.
>
> Can anybody give me any guidance? I presume that I might need to adjust
> some setting for larger input in the HBase and/or Hadoop config files.
> At present, I am using default settings. I have installed Hadoop 0.19.0
> and HBase 0.19.0 in the "pseudo" cluster mode on a single machine, my
> Red Hat Linux desktop, which has 3 Gb RAM.
>
> Any help / suggestions would be much appreciated.
>
> Cheers,
> Ron Taylor
>
>
> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>
> 2009-04-03 14:31:52,457 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:32:20,915 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238784767897, entries=100007. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794340913
>
> 2009-04-03 14:32:25,092 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 2 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:32:25,108 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 2 on 60383'
>
> 2009-04-03 14:32:32,203 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,,1238785658133
> 2009-04-03 14:32:32,220 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794080626, entries=107693. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794352207
> 2009-04-03 14:32:32,880 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new compressor
> 2009-04-03 14:32:37,220 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 4 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:32:39,113 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 4 on 60383'
> 2009-04-03 14:32:47,106 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 1 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:32:48,283 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scan of 1 row(s) of meta region {regionname:
> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:32:48,284 INFO org.apache.hadoop.hbase.master.BaseScanner:
> All 1 .META. region(s) scanned
> 2009-04-03 14:32:49,322 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,,1238785658133 in 17sec
> 2009-04-03 14:32:49,322 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,,1238785658133
> 2009-04-03 14:32:52,450 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:32:52,455 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:32:52,592 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 1 on 60383'
> 2009-04-03 14:32:52,608 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794340913, entries=111257. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794372604
> 2009-04-03 14:32:55,442 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 5 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:32:56,617 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 5 on 60383'
> 2009-04-03 14:32:59,118 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,,1238785658133 in 9sec
> 2009-04-03 14:32:59,118 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,,1238785658133
> 2009-04-03 14:33:09,589 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 6 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:33:10,814 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 6 on 60383'
> 2009-04-03 14:33:14,925 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 3 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:33:18,917 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 3 on 60383'
> 2009-04-03 14:33:19,060 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794352207, entries=142751. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794398986
> 2009-04-03 14:33:22,133 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 7 on 60383' on region ppInteractionTable,,1238785658133:
> Memcache size 128.0m is >= than blocking 128.0m size
> 2009-04-03 14:33:24,871 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,,1238785658133 in 25sec
> 2009-04-03 14:33:24,871 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
> ppInteractionTable,,1238785658133
> 2009-04-03 14:33:25,784 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,,1238785658133 'IPC Server handler 7 on 60383'
>
> 2009-04-03 14:33:27,648 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,,1238785658133
>
> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,099 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,103 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,104 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,109 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,144 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,145 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,149 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,150 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,155 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,162 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,194 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,195 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,199 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,203 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,207 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,211 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:28,212 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,,1238794404875/1028128493 available
> 2009-04-03 14:33:28,214 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,,1238794404875
> 2009-04-03 14:33:28,849 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
> 2009-04-03 14:33:28,850 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:33:29,262 INFO
> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
> META updated, and report to master all successful. Old region=REGION =>
> {NAME => 'ppInteractionTable,,1238785658133', STARTKEY => '', ENDKEY =>
> '', ENCODED => 1731079509, OFFLINE => true, SPLIT => true, TABLE =>
> {{NAME => 'ppInteractionTable', IS_ROOT => 'false', IS_META => 'false',
> FAMILIES => [{NAME => 'edgeCharacteristics', BLOOMFILTER => 'false',
> COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL =>
> '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1',
> BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH
> => '2147483647', TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE =>
> 'false'}, {NAME => 'protein2', BLOOMFILTER => 'false', COMPRESSION =>
> 'NONE', VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY
> => 'false', BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> ppInteractionTable,,1238794404875,
> ppInteractionTable,RPA0221_RPA3739,1238794404875. Split took 4sec
> 2009-04-03 14:33:30,894 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
> ppInteractionTable,,1238785658133: ppInteractionTable,,1238785658133
> split; daughters: ppInteractionTable,,1238794404875,
> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> 2009-04-03 14:33:30,894 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,RPA0221_RPA3739,1238794404875 to the only server
> 127.0.0.1:60383
> 2009-04-03 14:33:30,899 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,,1238794404875 to the only server 127.0.0.1:60383
> 2009-04-03 14:33:30,900 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:33:30,900 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,,1238794404875
> 2009-04-03 14:33:30,900 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:33:31,038 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0221_RPA3739,1238794404875/2029769324 available
> 2009-04-03 14:33:31,038 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,,1238794404875
> 2009-04-03 14:33:31,050 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,083 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,088 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,093 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,096 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,100 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,101 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,102 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,106 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,108 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,113 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,118 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,119 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,125 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,127 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,283 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,284 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,288 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,294 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,299 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:33:31,301 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,,1238794404875/1028128493 available
> 2009-04-03 14:33:33,945 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> 2009-04-03 14:33:33,945 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN: ppInteractionTable,,1238794404875 from
> 127.0.0.1:60383
> 2009-04-03 14:33:33,945 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794404875 from 127.0.0.1:60383
> 2009-04-03 14:33:33,950 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,,1238794404875 from 127.0.0.1:60383
> 2009-04-03 14:33:33,951 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,RPA0221_RPA3739,1238794404875 open on 127.0.0.1:60383
> 2009-04-03 14:33:33,951 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> ppInteractionTable,RPA0221_RPA3739,1238794404875 in region .META.,,1
> with startcode 1238784766938 and server 127.0.0.1:60383
> 2009-04-03 14:33:33,952 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,,1238794404875 open on 127.0.0.1:60383
> 2009-04-03 14:33:33,952 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> ppInteractionTable,,1238794404875 in region .META.,,1 with startcode
> 1238784766938 and server 127.0.0.1:60383
> 2009-04-03 14:33:47,523 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 16sec
> 2009-04-03 14:33:47,523 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,,1238794404875
> 2009-04-03 14:33:48,327 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scan of 3 row(s) of meta region {regionname:
> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:33:48,646 INFO org.apache.hadoop.hbase.master.BaseScanner:
> All 1 .META. region(s) scanned
> 2009-04-03 14:33:49,883 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 2 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:33:52,169 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 2 on 60383'
> 2009-04-03 14:33:52,240 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794372604, entries=106433. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794432177
> 2009-04-03 14:33:52,573 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:33:53,030 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:33:56,586 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 6 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:33:58,020 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 6 on 60383'
> 2009-04-03 14:34:00,413 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 1 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:03,495 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 1 on 60383'
> 2009-04-03 14:34:07,634 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 2 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:12,822 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 2 on 60383'
> 2009-04-03 14:34:12,828 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794398986, entries=106329. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794452826
> 2009-04-03 14:34:12,895 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,,1238794404875 in 25sec
> 2009-04-03 14:34:12,895 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:34:15,618 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 4 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:17,141 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 4 on 60383'
> 2009-04-03 14:34:22,448 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 5 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:22,515 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 5 on 60383'
> 2009-04-03 14:34:26,808 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 4 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:28,566 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 4 on 60383'
> 2009-04-03 14:34:32,356 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 3 on 60383' on region
> ppInteractionTable,RPA0221_RPA3739,1238794404875: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:33,387 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 in 20sec
> 2009-04-03 14:34:33,388 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
> ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:34:33,552 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0221_RPA3739,1238794404875 'IPC Server
> handler 3 on 60383'
> 2009-04-03 14:34:33,556 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794432177, entries=142311. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794473554
> 2009-04-03 14:34:35,548 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0221_RPA3739,1238794404875
> 2009-04-03 14:34:36,458 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
> 2009-04-03 14:34:36,461 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0221_RPA3739,1238794473392
> 2009-04-03 14:34:36,655 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
> 2009-04-03 14:34:36,656 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:34:36,662 INFO
> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
> META updated, and report to master all successful. Old region=REGION =>
> {NAME => 'ppInteractionTable,RPA0221_RPA3739,1238794404875', STARTKEY =>
> 'RPA0221_RPA3739', ENDKEY => '', ENCODED => 2029769324, OFFLINE => true,
> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
> 'false', IS_META => 'false', FAMILIES => [{NAME =>
> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> ppInteractionTable,RPA0221_RPA3739,1238794473392,
> ppInteractionTable,RPA0358_RPA0285,1238794473392. Split took 3sec
> 2009-04-03 14:34:37,182 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
> ppInteractionTable,RPA0221_RPA3739,1238794404875:
> ppInteractionTable,RPA0221_RPA3739,1238794404875 split; daughters:
> ppInteractionTable,RPA0221_RPA3739,1238794473392,
> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> 2009-04-03 14:34:37,182 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,RPA0221_RPA3739,1238794473392 to the only server
> 127.0.0.1:60383
> 2009-04-03 14:34:37,182 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,RPA0358_RPA0285,1238794473392 to the only server
> 127.0.0.1:60383
> 2009-04-03 14:34:37,183 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794473392
> 2009-04-03 14:34:37,183 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:34:37,183 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,RPA0221_RPA3739,1238794473392
> 2009-04-03 14:34:37,331 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0221_RPA3739,1238794473392/1583216956 available
> 2009-04-03 14:34:37,331 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:34:37,331 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,RPA0221_RPA3739,1238794473392
> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,444 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,445 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,450 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,455 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,456 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,488 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,489 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,493 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,499 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,505 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,517 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,577 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,591 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,592 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,595 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,599 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,600 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,605 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,606 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,619 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,623 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,624 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:34:37,625 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0358_RPA0285,1238794473392/1780004491 available
> 2009-04-03 14:34:40,202 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
> 2009-04-03 14:34:40,202 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> 2009-04-03 14:34:40,202 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,RPA0221_RPA3739,1238794473392 from 127.0.0.1:60383
> 2009-04-03 14:34:40,202 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794473392 from 127.0.0.1:60383
> 2009-04-03 14:34:40,203 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,RPA0221_RPA3739,1238794473392 open on 127.0.0.1:60383
> 2009-04-03 14:34:40,203 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> ppInteractionTable,RPA0221_RPA3739,1238794473392 in region .META.,,1
> with startcode 1238784766938 and server 127.0.0.1:60383
> 2009-04-03 14:34:40,203 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,RPA0358_RPA0285,1238794473392 open on 127.0.0.1:60383
> 2009-04-03 14:34:40,203 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> ppInteractionTable,RPA0358_RPA0285,1238794473392 in region .META.,,1
> with startcode 1238784766938 and server 127.0.0.1:60383
> 2009-04-03 14:34:48,336 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:34:49,001 INFO org.apache.hadoop.hbase.master.BaseScanner:
> Deleting region ppInteractionTable,,1238785658133 because daughter
> splits no longer hold references
> 2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scan of 5 row(s) of meta region {regionname:
> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:34:50,055 INFO org.apache.hadoop.hbase.master.BaseScanner:
> All 1 .META. region(s) scanned
> 2009-04-03 14:34:52,582 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:34:52,916 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 9 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:34:53,322 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:34:53,852 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,RPA0221_RPA3739,1238794473392 in 16sec
> 2009-04-03 14:34:53,852 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:34:59,217 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:34:59,621 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:00,024 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:00,426 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:00,828 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:01,230 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:01,634 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:01,936 INFO org.apache.hadoop.hdfs.DFSClient:
> org.apache.hadoop.ipc.RemoteException:
> org.apache.hadoop.hdfs.server.namenode.NotReplicatedYetException: Not
> replicated
> yet:/hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfi
> les/2075053806171367540/data
> at
> org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getAdditionalBlock(F
> SNamesystem.java:1256)
> at
> org.apache.hadoop.hdfs.server.namenode.NameNode.addBlock(NameNode.java:3
> 51)
> at sun.reflect.GeneratedMethodAccessor10.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
> Source)
> at java.lang.reflect.Method.invoke(Unknown Source)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:452)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:892)
>
> at org.apache.hadoop.ipc.Client.call(Client.java:696)
> at org.apache.hadoop.ipc.RPC$Invoker.invoke(RPC.java:216)
> at $Proxy0.addBlock(Unknown Source)
> at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown
> Source)
> at java.lang.reflect.Method.invoke(Unknown Source)
> at
> org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvo
> cationHandler.java:82)
> at
> org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocation
> Handler.java:59)
> at $Proxy0.addBlock(Unknown Source)
> at
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.locateFollowingBlock(DF
> SClient.java:2815)
> at
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.nextBlockOutputStream(D
> FSClient.java:2697)
> at
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream.access$2000(DFSClient.j
> ava:1997)
> at
> org.apache.hadoop.hdfs.DFSClient$DFSOutputStream$DataStreamer.run(DFSCli
> ent.java:2183)
>
> 2009-04-03 14:35:01,936 WARN org.apache.hadoop.hdfs.DFSClient:
> NotReplicatedYetException sleeping
> /hbaseDB/ppInteractionTable/compaction.dir/1780004491/protein2/mapfiles/
> 2075053806171367540/data retries left 4
> 2009-04-03 14:35:02,036 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:02,446 INFO org.apache.hadoop.hdfs.DFSClient: Could not
> complete file
> /hbaseDB/ppInteractionTable/1780004491/protein1/mapfiles/152669850755830
> 2278/data retrying...
> 2009-04-03 14:35:03,628 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 9 on 60383'
> 2009-04-03 14:35:08,546 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 6 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:10,059 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 6 on 60383'
> 2009-04-03 14:35:13,203 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 7 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:19,712 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 7 on 60383'
> 2009-04-03 14:35:23,969 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 0 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:24,415 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 0 on 60383'
> 2009-04-03 14:35:24,419 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794452826, entries=177752. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794524418
> 2009-04-03 14:35:35,707 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 3 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:39,253 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 3 on 60383'
> 2009-04-03 14:35:43,600 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 6 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:45,439 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 6 on 60383'
> 2009-04-03 14:35:48,342 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scanning meta region {regionname: .META.,,1,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:35:48,503 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.metaScanner scan of 4 row(s) of meta region {regionname:
> .META.,,1, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:35:48,504 INFO org.apache.hadoop.hbase.master.BaseScanner:
> All 1 .META. region(s) scanned
> 2009-04-03 14:35:49,897 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Blocking updates for 'IPC
> Server handler 3 on 60383' on region
> ppInteractionTable,RPA0358_RPA0285,1238794473392: Memcache size 128.0m
> is >= than blocking 128.0m size
> 2009-04-03 14:35:52,591 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scanning meta region {regionname: -ROOT-,,0,
> startKey: <>, server: 127.0.0.1:60383}
> 2009-04-03 14:35:52,689 INFO org.apache.hadoop.hbase.master.BaseScanner:
> RegionManager.rootScanner scan of 1 row(s) of meta region {regionname:
> -ROOT-,,0, startKey: <>, server: 127.0.0.1:60383} complete
> 2009-04-03 14:35:52,843 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: compaction completed on
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 in 58sec
> 2009-04-03 14:35:52,843 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Starting split of region
> ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:35:52,977 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Unblocking updates for
> region ppInteractionTable,RPA0358_RPA0285,1238794473392 'IPC Server
> handler 3 on 60383'
> 2009-04-03 14:35:55,075 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0358_RPA0285,1238794473392
> 2009-04-03 14:35:55,082 INFO org.apache.hadoop.hbase.regionserver.HLog:
> Closed
> hdfs://localhost:5302/hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat
> .1238794473554, entries=141994. New log writer:
> /hbaseDB/log_127.0.0.1_1238784766938_60383/hlog.dat.1238794555072
> 2009-04-03 14:35:56,047 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
> 2009-04-03 14:35:56,050 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0358_RPA0285,1238794552845
> 2009-04-03 14:35:56,224 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
> 2009-04-03 14:35:56,225 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: Closed
> ppInteractionTable,RPA0741_RPA0715,1238794552845
> 2009-04-03 14:35:56,227 INFO
> org.apache.hadoop.hbase.regionserver.CompactSplitThread: region split,
> META updated, and report to master all successful. Old region=REGION =>
> {NAME => 'ppInteractionTable,RPA0358_RPA0285,1238794473392', STARTKEY =>
> 'RPA0358_RPA0285', ENDKEY => '', ENCODED => 1780004491, OFFLINE => true,
> SPLIT => true, TABLE => {{NAME => 'ppInteractionTable', IS_ROOT =>
> 'false', IS_META => 'false', FAMILIES => [{NAME =>
> 'edgeCharacteristics', BLOOMFILTER => 'false', COMPRESSION => 'NONE',
> VERSIONS => '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY =>
> 'false', BLOCKCACHE => 'false'}, {NAME => 'protein1', BLOOMFILTER =>
> 'false', COMPRESSION => 'NONE', VERSIONS => '3', LENGTH => '2147483647',
> TTL => '-1', IN_MEMORY => 'false', BLOCKCACHE => 'false'}, {NAME =>
> 'protein2', BLOOMFILTER => 'false', COMPRESSION => 'NONE', VERSIONS =>
> '3', LENGTH => '2147483647', TTL => '-1', IN_MEMORY => 'false',
> BLOCKCACHE => 'false'}], INDEXES => []}}, new regions:
> ppInteractionTable,RPA0358_RPA0285,1238794552845,
> ppInteractionTable,RPA0741_RPA0715,1238794552845. Split took 3sec
> 2009-04-03 14:35:58,206 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_SPLIT:
> ppInteractionTable,RPA0358_RPA0285,1238794473392:
> ppInteractionTable,RPA0358_RPA0285,1238794473392 split; daughters:
> ppInteractionTable,RPA0358_RPA0285,1238794552845,
> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> 2009-04-03 14:35:58,206 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,RPA0358_RPA0285,1238794552845 to the only server
> 127.0.0.1:60383
> 2009-04-03 14:35:58,207 INFO
> org.apache.hadoop.hbase.master.RegionManager: assigning region
> ppInteractionTable,RPA0741_RPA0715,1238794552845 to the only server
> 127.0.0.1:60383
> 2009-04-03 14:35:58,207 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794552845
> 2009-04-03 14:35:58,207 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: MSG_REGION_OPEN:
> ppInteractionTable,RPA0741_RPA0715,1238794552845
> 2009-04-03 14:35:58,207 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,RPA0358_RPA0285,1238794552845
> 2009-04-03 14:35:58,366 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0358_RPA0285,1238794552845/959490406 available
> 2009-04-03 14:35:58,367 INFO
> org.apache.hadoop.hbase.regionserver.HRegionServer: Worker:
> MSG_REGION_OPEN: ppInteractionTable,RPA0741_RPA0715,1238794552845
> 2009-04-03 14:35:58,367 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: starting compaction on
> region ppInteractionTable,RPA0358_RPA0285,1238794552845
> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,497 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,567 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,568 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,573 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,578 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,579 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,583 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,595 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,596 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,600 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,604 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,605 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,609 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,610 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,614 INFO org.apache.hadoop.io.compress.CodecPool:
> Got brand-new decompressor
> 2009-04-03 14:35:58,615 INFO
> org.apache.hadoop.hbase.regionserver.HRegion: region
> ppInteractionTable,RPA0741_RPA0715,1238794552845/1983444102 available
> 2009-04-03 14:36:01,234 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
> 2009-04-03 14:36:01,234 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received
> MSG_REPORT_PROCESS_OPEN:
> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> 2009-04-03 14:36:01,234 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,RPA0358_RPA0285,1238794552845 from 127.0.0.1:60383
> 2009-04-03 14:36:01,235 INFO
> org.apache.hadoop.hbase.master.ServerManager: Received MSG_REPORT_OPEN:
> ppInteractionTable,RPA0741_RPA0715,1238794552845 from 127.0.0.1:60383
> 2009-04-03 14:36:01,235 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,RPA0358_RPA0285,1238794552845 open on 127.0.0.1:60383
> 2009-04-03 14:36:01,235 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1: updating row
> ppInteractionTable,RPA0358_RPA0285,1238794552845 in region .META.,,1
> with startcode 1238784766938 and server 127.0.0.1:60383
> 2009-04-03 14:36:01,236 INFO
> org.apache.hadoop.hbase.master.ProcessRegionOpen$1:
> ppInteractionTable,RPA0741_RPA0715,1238794552845 open on 127.0.0.1:60383
>