[3/9] incubator-taverna-language git commit: Remove MotifAnalysisIT test

[st...@apache.org]

Remove MotifAnalysisIT test


Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/commit/42eb15a3
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/tree/42eb15a3
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/diff/42eb15a3

Branch: refs/heads/master
Commit: 42eb15a386f02117585dedea76b96a7ea2239f55
Parents: a61518d
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Tue Mar 17 09:05:21 2015 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Tue Mar 17 09:05:21 2015 +0000

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 .../taverna/robundle/MotifAnalysisIT.java       | 126 -------------------
 1 file changed, 126 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-taverna-language/blob/42eb15a3/taverna-robundle/src/test/java/org/apache/taverna/robundle/MotifAnalysisIT.java
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diff --git a/taverna-robundle/src/test/java/org/apache/taverna/robundle/MotifAnalysisIT.java b/taverna-robundle/src/test/java/org/apache/taverna/robundle/MotifAnalysisIT.java
deleted file mode 100644
index 54958b8..0000000
--- a/taverna-robundle/src/test/java/org/apache/taverna/robundle/MotifAnalysisIT.java
+++ /dev/null
@@ -1,126 +0,0 @@
-package org.apache.taverna.robundle;
-
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- * 
- *   http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-
-
-import java.net.URI;
-import java.nio.file.FileSystem;
-import java.nio.file.FileSystems;
-import java.nio.file.Files;
-import java.nio.file.Path;
-import java.nio.file.Paths;
-import java.nio.file.StandardCopyOption;
-import java.util.ArrayList;
-import java.util.List;
-
-import org.apache.taverna.robundle.Bundle;
-import org.apache.taverna.robundle.Bundles;
-import org.apache.taverna.robundle.manifest.Agent;
-import org.apache.taverna.robundle.manifest.Manifest;
-import org.apache.taverna.robundle.manifest.PathAnnotation;
-import org.junit.Test;
-
-public class MotifAnalysisIT {
-	@Test
-	public void motifAnalysis() throws Exception {
-
-		// The new RO bundle
-		Path ro = Files.createTempFile("motifAnalysis", ".robundle.zip");
-		try (Bundle bundle = Bundles.createBundle(ro)) {
-
-			Path orig = Paths.get(getClass().getResource("/motifAnalysis.zip")
-					.toURI());
-
-			// Copy the motifAnalysis/ folder
-			try (FileSystem origfs = FileSystems.newFileSystem(orig, null)) {
-				Path origFolder = origfs.getPath("motifAnalysis/");
-				Bundles.copyRecursively(origFolder, bundle.getRoot(),
-						StandardCopyOption.REPLACE_EXISTING,
-						StandardCopyOption.COPY_ATTRIBUTES);
-			}
-
-			// TODO: Generating manifest should be automatic!
-
-			// Generate manifest
-			Manifest manifest = bundle.getManifest();
-
-			// attributions
-
-			// Stian made the RO bundle
-			Agent stian = new Agent();
-			stian.setUri(URI.create("http://soiland-reyes.com/stian/#me"));
-			stian.setOrcid(URI.create("http://orcid.org/0000-0001-9842-9718"));
-			stian.setName("Stian Soiland-Reyes");
-			manifest.setCreatedBy(stian);
-			// RO bundle was created "now"
-			manifest.setCreatedOn(Files.getLastModifiedTime(ro));
-
-			// but it was *authored* by Daniel et al
-
-			Agent daniel = new Agent();
-			daniel.setUri(URI
-					.create("http://delicias.dia.fi.upm.es/members/DGarijo/#me"));
-			daniel.setOrcid(URI.create("http://orcid.org/0000-0003-0454-7145"));
-			daniel.setName("Daniel Garijo");
-
-			List<Agent> authors = new ArrayList<>();
-			authors.add(daniel);
-			authors.add(new Agent("Pinar Alper"));
-			authors.add(new Agent("Khalid Belhajjame"));
-			authors.add(new Agent("Oscar Corcho"));
-			authors.add(new Agent("Yolanda Gil"));
-			authors.add(new Agent("Carole Goble"));
-			manifest.setAuthoredBy(authors);
-
-			// when was the RO authored? We'll say when the README was made..
-			Path readme = bundle.getRoot().resolve("README.txt");
-			manifest.setAuthoredOn(Files.getLastModifiedTime(readme));
-
-			// And who made the README file?
-			manifest.getAggregation(readme).setCreatedBy(daniel);
-			manifest.getAggregation(readme).setMediatype("text/plain");
-
-			// Annotations
-
-			PathAnnotation readmeAnnotation = new PathAnnotation();
-			readmeAnnotation.setAbout(URI.create("/"));
-			readmeAnnotation.setContent(URI.create("/README.txt"));
-			readmeAnnotation.generateAnnotationId();
-			manifest.getAnnotations().add(readmeAnnotation);
-
-			PathAnnotation website = new PathAnnotation();
-			website.setAbout(URI.create("/"));
-			website.setContent(URI
-					.create("http://www.oeg-upm.net/files/dgarijo/motifAnalysisSite/"));
-			website.generateAnnotationId();
-			manifest.getAnnotations().add(website);
-
-			// Write out manifest
-			// This is now done automatically on close()
-			// manifest.writeAsJsonLD();
-		}
-
-		System.out.println("Generated " + ro);
-		// if (Desktop.isDesktopSupported()) {
-		// Desktop.getDesktop().open(ro.toFile());
-		// }
-	}
-
-}