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Posted to user@tika.apache.org by Jim <ji...@protonmail.com> on 2019/01/30 14:34:08 UTC
Memory Errors with PDFBOX
I have a simple Tika REST service that accepts a Base64Encoded String (which for testing is a PDF File in this case).
The REST service that receives the string Base64-decodes the string and passes it to Tika for file text extraction (from the binary PDF content after Base64 Decode).
Locally, on an iMac with 16 GB, all this works fine. Even with a PDF that's 150 MB! No errors at all.
Yet, using an AWS Windows 2008 server also with 16 GB RAM (t3.xlarge), I get the error stack below.
I've tried upping the memory used by Tomcat (CATALINA_OPTS environment variable in Windows on AWS), but locally on the iMac, I don't do anything special at all for all to work. Both the working iMac and Windows have the same version of the service with Tika 1.20 libs.
Would appreciate any advice or suggestions.
Thanks very much.
ERROR STACK:
"java.lang.OutOfMemoryError: GC overhead limit exceeded
at org.apache.pdfbox.cos.COSNumber.get(COSNumber.java:115)
at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:949)
at org.apache.pdfbox.pdfparser.BaseParser.parseCOSArray(BaseParser.java:632)
at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:876)
at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryValue(BaseParser.java:152)
at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryNameValuePair(BaseParser.java:279)
at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionary(BaseParser.java:212)
at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:864)
at org.apache.pdfbox.pdfparser.PDFObjectStreamParser.parse(PDFObjectStreamParser.java:88)
at org.apache.pdfbox.pdfparser.COSParser.parseObjectStream(COSParser.java:993)
at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:879)
at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:793)
at org.apache.pdfbox.pdfparser.COSParser.parseDictObjects(COSParser.java:753)
at org.apache.pdfbox.pdfparser.PDFParser.initialParse(PDFParser.java:187)
at org.apache.pdfbox.pdfparser.PDFParser.parse(PDFParser.java:226)
at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1200)
at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1173)
at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
at com.alias.ws.service.TextExtractionService.extractText(TextExtractionService.java:40)
at com.alias.ws.controllers.TextExtractionController.extractText(TextExtractionController.java:40)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:877)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:783)
Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email.
Re: Fwd: Memory Errors with PDFBOX
Posted by Tilman Hausherr <TH...@t-online.de>.
It would be interesting if the issue could be reproduced with PDFBox
alone, i.e. just load the file (or rather, the input stream, so it
seems) in the Tomcat servlet.
If it can be reproduced - would it be possible to set up a non AWS
tomcat with the same problem? And if yes, what are the settings?
All this should be tested on the same java version. (Which one is being
used?)
Tilman
Am 30.01.2019 um 17:13 schrieb Tim Allison:
> forwarding to the correct pdfbox address... sorry for the noise...
>
> ---------- Forwarded message ---------
> From: Tim Allison <ta...@apache.org>
> Date: Wed, Jan 30, 2019 at 10:29 AM
> Subject: Re: Memory Errors with PDFBOX
> To: <us...@tika.apache.org>, Jim <ji...@protonmail.com>, <us...@pdfbox.org>
>
>
> @PDFBox colleagues,
> Any thoughts/recommendations?
>
> On Wed, Jan 30, 2019 at 9:43 AM Jim <ji...@protonmail.com> wrote:
>> I have a simple Tika REST service that accepts a Base64Encoded String (which for testing is a PDF File in this case).
>>
>> The REST service that receives the string Base64-decodes the string and passes it to Tika for file text extraction (from the binary PDF content after Base64 Decode).
>>
>> Locally, on an iMac with 16 GB, all this works fine. Even with a PDF that's 150 MB! No errors at all.
>>
>> Yet, using an AWS Windows 2008 server also with 16 GB RAM (t3.xlarge), I get the error stack below.
>>
>> I've tried upping the memory used by Tomcat (CATALINA_OPTS environment variable in Windows on AWS), but locally on the iMac, I don't do anything special at all for all to work. Both the working iMac and Windows have the same version of the service with Tika 1.20 libs.
>>
>> Would appreciate any advice or suggestions.
>>
>> Thanks very much.
>>
>> ERROR STACK:
>>
>> "java.lang.OutOfMemoryError: GC overhead limit exceeded
>> at org.apache.pdfbox.cos.COSNumber.get(COSNumber.java:115)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:949)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSArray(BaseParser.java:632)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:876)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryValue(BaseParser.java:152)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryNameValuePair(BaseParser.java:279)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionary(BaseParser.java:212)
>> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:864)
>> at org.apache.pdfbox.pdfparser.PDFObjectStreamParser.parse(PDFObjectStreamParser.java:88)
>> at org.apache.pdfbox.pdfparser.COSParser.parseObjectStream(COSParser.java:993)
>> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:879)
>> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:793)
>> at org.apache.pdfbox.pdfparser.COSParser.parseDictObjects(COSParser.java:753)
>> at org.apache.pdfbox.pdfparser.PDFParser.initialParse(PDFParser.java:187)
>> at org.apache.pdfbox.pdfparser.PDFParser.parse(PDFParser.java:226)
>> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1200)
>> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1173)
>> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
>> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
>> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
>> at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
>> at com.alias.ws.service.TextExtractionService.extractText(TextExtractionService.java:40)
>> at com.alias.ws.controllers.TextExtractionController.extractText(TextExtractionController.java:40)
>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>> at java.lang.reflect.Method.invoke(Method.java:498)
>> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209)
>> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
>> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102)
>> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:877)
>> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:783)
>>
>>
>>
>> Sent from ProtonMail, Swiss-based encrypted email.
>>
>>
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Fwd: Memory Errors with PDFBOX
Posted by Tim Allison <ta...@apache.org>.
forwarding to the correct pdfbox address... sorry for the noise...
---------- Forwarded message ---------
From: Tim Allison <ta...@apache.org>
Date: Wed, Jan 30, 2019 at 10:29 AM
Subject: Re: Memory Errors with PDFBOX
To: <us...@tika.apache.org>, Jim <ji...@protonmail.com>, <us...@pdfbox.org>
@PDFBox colleagues,
Any thoughts/recommendations?
On Wed, Jan 30, 2019 at 9:43 AM Jim <ji...@protonmail.com> wrote:
>
> I have a simple Tika REST service that accepts a Base64Encoded String (which for testing is a PDF File in this case).
>
> The REST service that receives the string Base64-decodes the string and passes it to Tika for file text extraction (from the binary PDF content after Base64 Decode).
>
> Locally, on an iMac with 16 GB, all this works fine. Even with a PDF that's 150 MB! No errors at all.
>
> Yet, using an AWS Windows 2008 server also with 16 GB RAM (t3.xlarge), I get the error stack below.
>
> I've tried upping the memory used by Tomcat (CATALINA_OPTS environment variable in Windows on AWS), but locally on the iMac, I don't do anything special at all for all to work. Both the working iMac and Windows have the same version of the service with Tika 1.20 libs.
>
> Would appreciate any advice or suggestions.
>
> Thanks very much.
>
> ERROR STACK:
>
> "java.lang.OutOfMemoryError: GC overhead limit exceeded
> at org.apache.pdfbox.cos.COSNumber.get(COSNumber.java:115)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:949)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSArray(BaseParser.java:632)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:876)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryValue(BaseParser.java:152)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryNameValuePair(BaseParser.java:279)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionary(BaseParser.java:212)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:864)
> at org.apache.pdfbox.pdfparser.PDFObjectStreamParser.parse(PDFObjectStreamParser.java:88)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectStream(COSParser.java:993)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:879)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:793)
> at org.apache.pdfbox.pdfparser.COSParser.parseDictObjects(COSParser.java:753)
> at org.apache.pdfbox.pdfparser.PDFParser.initialParse(PDFParser.java:187)
> at org.apache.pdfbox.pdfparser.PDFParser.parse(PDFParser.java:226)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1200)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1173)
> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
> at com.alias.ws.service.TextExtractionService.extractText(TextExtractionService.java:40)
> at com.alias.ws.controllers.TextExtractionController.extractText(TextExtractionController.java:40)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209)
> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:877)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:783)
>
>
>
> Sent from ProtonMail, Swiss-based encrypted email.
>
>
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To unsubscribe, e-mail: users-unsubscribe@pdfbox.apache.org
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Fwd: Memory Errors with PDFBOX
Posted by Tim Allison <ta...@apache.org>.
forwarding to the correct pdfbox address... sorry for the noise...
---------- Forwarded message ---------
From: Tim Allison <ta...@apache.org>
Date: Wed, Jan 30, 2019 at 10:29 AM
Subject: Re: Memory Errors with PDFBOX
To: <us...@tika.apache.org>, Jim <ji...@protonmail.com>, <us...@pdfbox.org>
@PDFBox colleagues,
Any thoughts/recommendations?
On Wed, Jan 30, 2019 at 9:43 AM Jim <ji...@protonmail.com> wrote:
>
> I have a simple Tika REST service that accepts a Base64Encoded String (which for testing is a PDF File in this case).
>
> The REST service that receives the string Base64-decodes the string and passes it to Tika for file text extraction (from the binary PDF content after Base64 Decode).
>
> Locally, on an iMac with 16 GB, all this works fine. Even with a PDF that's 150 MB! No errors at all.
>
> Yet, using an AWS Windows 2008 server also with 16 GB RAM (t3.xlarge), I get the error stack below.
>
> I've tried upping the memory used by Tomcat (CATALINA_OPTS environment variable in Windows on AWS), but locally on the iMac, I don't do anything special at all for all to work. Both the working iMac and Windows have the same version of the service with Tika 1.20 libs.
>
> Would appreciate any advice or suggestions.
>
> Thanks very much.
>
> ERROR STACK:
>
> "java.lang.OutOfMemoryError: GC overhead limit exceeded
> at org.apache.pdfbox.cos.COSNumber.get(COSNumber.java:115)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:949)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSArray(BaseParser.java:632)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:876)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryValue(BaseParser.java:152)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryNameValuePair(BaseParser.java:279)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionary(BaseParser.java:212)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:864)
> at org.apache.pdfbox.pdfparser.PDFObjectStreamParser.parse(PDFObjectStreamParser.java:88)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectStream(COSParser.java:993)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:879)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:793)
> at org.apache.pdfbox.pdfparser.COSParser.parseDictObjects(COSParser.java:753)
> at org.apache.pdfbox.pdfparser.PDFParser.initialParse(PDFParser.java:187)
> at org.apache.pdfbox.pdfparser.PDFParser.parse(PDFParser.java:226)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1200)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1173)
> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
> at com.alias.ws.service.TextExtractionService.extractText(TextExtractionService.java:40)
> at com.alias.ws.controllers.TextExtractionController.extractText(TextExtractionController.java:40)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209)
> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:877)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:783)
>
>
>
> Sent from ProtonMail, Swiss-based encrypted email.
>
>
Re: Memory Errors with PDFBOX
Posted by Tim Allison <ta...@apache.org>.
@PDFBox colleagues,
Any thoughts/recommendations?
On Wed, Jan 30, 2019 at 9:43 AM Jim <ji...@protonmail.com> wrote:
>
> I have a simple Tika REST service that accepts a Base64Encoded String (which for testing is a PDF File in this case).
>
> The REST service that receives the string Base64-decodes the string and passes it to Tika for file text extraction (from the binary PDF content after Base64 Decode).
>
> Locally, on an iMac with 16 GB, all this works fine. Even with a PDF that's 150 MB! No errors at all.
>
> Yet, using an AWS Windows 2008 server also with 16 GB RAM (t3.xlarge), I get the error stack below.
>
> I've tried upping the memory used by Tomcat (CATALINA_OPTS environment variable in Windows on AWS), but locally on the iMac, I don't do anything special at all for all to work. Both the working iMac and Windows have the same version of the service with Tika 1.20 libs.
>
> Would appreciate any advice or suggestions.
>
> Thanks very much.
>
> ERROR STACK:
>
> "java.lang.OutOfMemoryError: GC overhead limit exceeded
> at org.apache.pdfbox.cos.COSNumber.get(COSNumber.java:115)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:949)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSArray(BaseParser.java:632)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:876)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryValue(BaseParser.java:152)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionaryNameValuePair(BaseParser.java:279)
> at org.apache.pdfbox.pdfparser.BaseParser.parseCOSDictionary(BaseParser.java:212)
> at org.apache.pdfbox.pdfparser.BaseParser.parseDirObject(BaseParser.java:864)
> at org.apache.pdfbox.pdfparser.PDFObjectStreamParser.parse(PDFObjectStreamParser.java:88)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectStream(COSParser.java:993)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:879)
> at org.apache.pdfbox.pdfparser.COSParser.parseObjectDynamically(COSParser.java:793)
> at org.apache.pdfbox.pdfparser.COSParser.parseDictObjects(COSParser.java:753)
> at org.apache.pdfbox.pdfparser.PDFParser.initialParse(PDFParser.java:187)
> at org.apache.pdfbox.pdfparser.PDFParser.parse(PDFParser.java:226)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1200)
> at org.apache.pdfbox.pdmodel.PDDocument.load(PDDocument.java:1173)
> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
> at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
> at com.alias.ws.service.TextExtractionService.extractText(TextExtractionService.java:40)
> at com.alias.ws.controllers.TextExtractionController.extractText(TextExtractionController.java:40)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:498)
> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:209)
> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:102)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:877)
> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:783)
>
>
>
> Sent from ProtonMail, Swiss-based encrypted email.
>
>