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Posted to dev@datasketches.apache.org by Qingjun Xiao <cs...@seu.edu.cn> on 2020/10/28 04:19:49 UTC
incubator-datasketches-cpp fails to work about its python binding
Hi, all:
I cloned the latest version of incubator-datasketches-cpp, and built it
on Python3.9 and Pip3.9. When I executed the tox test suite about its
python binding, I encountered the error attached at the end.
```
cd ~/github/incubator-datasketches-cpp
git submodule update --init --recursive
sudo python3.9 setup.py build # install binding for python 3.9
sudo rm -r .tox # remove old tox stuffs
# python Unit tests
sudo tox
```
I also tried Python3.8 and Pip3.8. The following error still exits.
Thanks if anyone can instruct how to fix the problem.
Qingjun Xiao
____________________________________ ERROR collecting
python/tests/vo_test.py _____________________________________
ImportError while importing test module
'/home/seu/github/incubator-datasketches-cpp/python/tests/vo_test.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/local/lib/python3.9/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
vo_test.py:19: in <module>
from datasketches import var_opt_sketch, var_opt_union
E ImportError:
/home/seu/github/incubator-datasketches-cpp/.tox/py3/lib/python3.9/site-packages/datasketches.cpython-39-x86_64-linux-gnu.so:
undefined symbol:
_ZN12datasketches25update_theta_sketch_allocISaIvEE7builder12DEFAULT_LG_KE
============================================= short test summary info
=============================================
ERROR cpc_test.py
ERROR fi_test.py
ERROR hll_test.py
ERROR kll_test.py
ERROR theta_test.py
ERROR vector_of_kll_test.py
ERROR vo_test.py
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 7 errors during
collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
================================================ 7 errors in 0.09s
================================================
ERROR: InvocationError for command
/home/seu/github/incubator-datasketches-cpp/.tox/py3/bin/pytest (exited
with code 2)
_____________________________________________________ summary
_____________________________________________________
ERROR: py3: commands failed
---------------------------------------------------------------------
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Re: incubator-datasketches-cpp fails to work about its python binding
Posted by Jon Malkin <jo...@gmail.com>.
Fixed my local tox issues. Definitely not related to this.
jon
On Wed, Oct 28, 2020, 12:49 AM Jon Malkin <jo...@gmail.com> wrote:
> Python 3.9 doesn't yet seem to be properly supported by a number of
> packages. I had to force our CI pipeline to use 3.8, and then it worked
> fine -- except that my local tox seems to be hanging when installing
> dependencies.
>
> jon
>
> On Tue, Oct 27, 2020 at 10:08 PM Qingjun Xiao <cs...@seu.edu.cn> wrote:
>
>> Hi, all:
>>
>> I cloned the latest version of incubator-datasketches-cpp, and built it
>> on Python3.9 and Pip3.9. When I executed the tox test suite about its
>> python binding, I encountered the error attached at the end.
>>
>> ```
>>
>> cd ~/github/incubator-datasketches-cpp
>> git submodule update --init --recursive
>>
>> sudo python3.9 setup.py build # install binding for python 3.9
>>
>> sudo rm -r .tox # remove old tox stuffs
>>
>> # python Unit tests
>> sudo tox
>>
>> ```
>>
>> I also tried Python3.8 and Pip3.8. The following error still exits.
>> Thanks if anyone can instruct how to fix the problem.
>>
>> Qingjun Xiao
>>
>> ____________________________________ ERROR collecting
>> python/tests/vo_test.py _____________________________________
>> ImportError while importing test module
>> '/home/seu/github/incubator-datasketches-cpp/python/tests/vo_test.py'.
>> Hint: make sure your test modules/packages have valid Python names.
>> Traceback:
>> /usr/local/lib/python3.9/importlib/__init__.py:127: in import_module
>> return _bootstrap._gcd_import(name[level:], package, level)
>> vo_test.py:19: in <module>
>> from datasketches import var_opt_sketch, var_opt_union
>> E ImportError:
>>
>> /home/seu/github/incubator-datasketches-cpp/.tox/py3/lib/python3.9/site-packages/
>> datasketches.cpython-39-x86_64-linux-gnu.so:
>> undefined symbol:
>> _ZN12datasketches25update_theta_sketch_allocISaIvEE7builder12DEFAULT_LG_KE
>> ============================================= short test summary info
>> =============================================
>> ERROR cpc_test.py
>> ERROR fi_test.py
>> ERROR hll_test.py
>> ERROR kll_test.py
>> ERROR theta_test.py
>> ERROR vector_of_kll_test.py
>> ERROR vo_test.py
>> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 7 errors during
>> collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
>> ================================================ 7 errors in 0.09s
>> ================================================
>> ERROR: InvocationError for command
>> /home/seu/github/incubator-datasketches-cpp/.tox/py3/bin/pytest (exited
>> with code 2)
>> _____________________________________________________ summary
>> _____________________________________________________
>> ERROR: py3: commands failed
>>
>>
>>
>> ---------------------------------------------------------------------
>> To unsubscribe, e-mail: dev-unsubscribe@datasketches.apache.org
>> For additional commands, e-mail: dev-help@datasketches.apache.org
>>
>>
Re: incubator-datasketches-cpp fails to work about its python binding
Posted by Jon Malkin <jo...@gmail.com>.
Python 3.9 doesn't yet seem to be properly supported by a number of
packages. I had to force our CI pipeline to use 3.8, and then it worked
fine -- except that my local tox seems to be hanging when installing
dependencies.
jon
On Tue, Oct 27, 2020 at 10:08 PM Qingjun Xiao <cs...@seu.edu.cn> wrote:
> Hi, all:
>
> I cloned the latest version of incubator-datasketches-cpp, and built it
> on Python3.9 and Pip3.9. When I executed the tox test suite about its
> python binding, I encountered the error attached at the end.
>
> ```
>
> cd ~/github/incubator-datasketches-cpp
> git submodule update --init --recursive
>
> sudo python3.9 setup.py build # install binding for python 3.9
>
> sudo rm -r .tox # remove old tox stuffs
>
> # python Unit tests
> sudo tox
>
> ```
>
> I also tried Python3.8 and Pip3.8. The following error still exits.
> Thanks if anyone can instruct how to fix the problem.
>
> Qingjun Xiao
>
> ____________________________________ ERROR collecting
> python/tests/vo_test.py _____________________________________
> ImportError while importing test module
> '/home/seu/github/incubator-datasketches-cpp/python/tests/vo_test.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/local/lib/python3.9/importlib/__init__.py:127: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> vo_test.py:19: in <module>
> from datasketches import var_opt_sketch, var_opt_union
> E ImportError:
>
> /home/seu/github/incubator-datasketches-cpp/.tox/py3/lib/python3.9/site-packages/
> datasketches.cpython-39-x86_64-linux-gnu.so:
> undefined symbol:
> _ZN12datasketches25update_theta_sketch_allocISaIvEE7builder12DEFAULT_LG_KE
> ============================================= short test summary info
> =============================================
> ERROR cpc_test.py
> ERROR fi_test.py
> ERROR hll_test.py
> ERROR kll_test.py
> ERROR theta_test.py
> ERROR vector_of_kll_test.py
> ERROR vo_test.py
> !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 7 errors during
> collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
> ================================================ 7 errors in 0.09s
> ================================================
> ERROR: InvocationError for command
> /home/seu/github/incubator-datasketches-cpp/.tox/py3/bin/pytest (exited
> with code 2)
> _____________________________________________________ summary
> _____________________________________________________
> ERROR: py3: commands failed
>
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: dev-unsubscribe@datasketches.apache.org
> For additional commands, e-mail: dev-help@datasketches.apache.org
>
>