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Posted to reviews@spark.apache.org by GitBox <gi...@apache.org> on 2019/04/02 05:23:05 UTC

[GitHub] [spark] cloud-fan opened a new pull request #24269: [SPARK-27341][CORE] fix a deadlock between TaskMemoryManager and UnsafeExternalSorter

cloud-fan opened a new pull request #24269: [SPARK-27341][CORE] fix a deadlock between TaskMemoryManager and UnsafeExternalSorter
URL: https://github.com/apache/spark/pull/24269
 
 
   ## What changes were proposed in this pull request?
   
   This is a long-standing bug.
   
   In `TaskMemoryManager.acquireExecutionMemory`, we may lock `TaskMemoryManager` and spill `MemoryConsumer`s. `UnsafeExternalSorter` is a `MemoryConsumer` and locks its `SpillableIterator` during spill.
   
   In `UnsafeExternalSorter#SpillableIterator.loadNext`, we lock `SpillableIterator` and may call `freePage` which locks `TaskMemoryManager`.
   
   If there are 2 threads doing these 2 locking chains together, a deadlock happens:
   thread1: lock `TaskMemoryManager` and then `SpillableIterator`
   thread2: lock `SpillableIterator` and then `TaskMemoryManager`
   
   As an example, PythonUDFExec launches 2 threads for one task, which can trigger this deadlock.
   
   The thread dump when the deadlock happens:
   thread 1
   ```
   org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter$SpillableIterator.spill(UnsafeExternalSorter.java:535)
   org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.spill(UnsafeExternalSorter.java:201)
   org.apache.spark.memory.TaskMemoryManager.acquireExecutionMemory(TaskMemoryManager.java:177) => holding Monitor(org.apache.spark.memory.TaskMemoryManager@49054460})
   org.apache.spark.memory.TaskMemoryManager.allocatePage(TaskMemoryManager.java:285)
   org.apache.spark.memory.MemoryConsumer.allocatePage(MemoryConsumer.java:117)
   org.apache.spark.sql.execution.python.HybridRowQueue.createNewQueue(RowQueue.scala:227)
   org.apache.spark.sql.execution.python.HybridRowQueue.add(RowQueue.scala:250)
   org.apache.spark.sql.execution.python.EvalPythonExec$
   ```
   thread 2
   ```
   org.apache.spark.memory.TaskMemoryManager.freePage(TaskMemoryManager.java:334)
   org.apache.spark.memory.MemoryConsumer.freePage(MemoryConsumer.java:130)
   org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.access$1100(UnsafeExternalSorter.java:49)
   org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter$SpillableIterator.loadNext(UnsafeExternalSorter.java:593) => holding Monitor(org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter$SpillableIterator@717107972})
   org.apache.spark.sql.execution.UnsafeExternalRowSorter$1.next(UnsafeExternalRowSorter.java:187)
   org.apache.spark.sql.execution.UnsafeExternalRowSorter$1.next(UnsafeExternalRowSorter.java:174)
   org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage5.processNext(Unknown Source)
   
   ```
   
   ## How was this patch tested?
   
   manual test, by inserting some sync points in the code, to enter to code flow that triggers dead lock.

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