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Posted to dev@airavata.apache.org by "Shinyoung Ahn (JIRA)" <ji...@apache.org> on 2013/04/11 02:27:16 UTC
[jira] [Created] (AIRAVATA-820) Parameter mismatching when using
ForEach
Shinyoung Ahn created AIRAVATA-820:
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Summary: Parameter mismatching when using ForEach
Key: AIRAVATA-820
URL: https://issues.apache.org/jira/browse/AIRAVATA-820
Project: Airavata
Issue Type: Bug
Reporter: Shinyoung Ahn
When an application have three parameters, fir and second parameter's type is String type and
the third parameter is StringArray type.
Third parameter is connected to ForEach.
When I execute the applications
Airavat show unexpected behavior like below. 'Invoking service' do not use right value that I expected…
I expect the input parameters’ values of bwa_aln_fwd_p_invoke are same with the parameter of 'WorkflowInvoked'.
The Notification Message as follows
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Status'workflowInvoked'
<ns:workflowInvoked infoModelVersion="2.6"
xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
<ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
<ns:timestamp>2013-04-11T09:15:41.988+09:00</ns:timestamp>
<ns:description>thread=4, refIndexFile=/home/team/genome/bwaindex/chr22.fa, Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01, Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01</ns:description>
<ns:annotation />
<ns:initiator ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" />
</ns:workflowInvoked>
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Status: invokingService
<ns:invokingService infoModelVersion="2.6"
xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
<ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
<ns:timestamp>2013-04-11T09:15:42.240+09:00</ns:timestamp>
<ns:description>thread=/home/team/genome/Demo/sample_1.fq.00, refIndexFile=/home/team/genome/Demo/sample_1.fq.00, bwdFqFile=/home/team/genome/Demo/sample_1.fq.00</ns:description>
<ns:annotation />
<ns:request>
<ns:body>
<n1:invoke_InputParams
xmlns:n1="http://airavata.apache.org/schemas/gfac/2012/12/bwa_aln_bwd/xsd">
<thread>/home/team/genome/Demo/sample_1.fq.00</thread>
<refIndexFile>/home/team/genome/Demo/sample_1.fq.00</refIndexFile>
<bwdFqFile>/home/team/genome/Demo/sample_1.fq.00</bwdFqFile>
</n1:invoke_InputParams>
</ns:body>
</ns:request>
<ns:receiver ns:serviceID="bwa_aln_bwd_invoke" ns:workflowID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:workflowTimestep="0" ns:workflowNodeID="bwa_aln_bwd_invoke" />
</ns:invokingService>
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