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Posted to common-issues@hadoop.apache.org by "Takenori Sato (JIRA)" <ji...@apache.org> on 2015/03/20 04:16:38 UTC
[jira] [Updated] (HADOOP-11730) The broken s3n read retry logic
causes a wrong output being committed
[ https://issues.apache.org/jira/browse/HADOOP-11730?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Takenori Sato updated HADOOP-11730:
-----------------------------------
Attachment: HADOOP-11730-branch-2.6.0.001.patch
The first proposal without the test case.
2015-03-20 12:05:08,473 [TezChild] INFO org.apache.hadoop.fs.s3native.NativeS3FileSystem - Received IOException while reading 'user/hadoop/tsato/readlarge/input/cloudian-s3.log.20141119', attempting to reopen.
2015-03-20 12:05:08,473 [TezChild] DEBUG org.jets3t.service.impl.rest.httpclient.RestStorageService - Retrieving All information for bucket shared and object user/hadoop/tsato/readlarge/input/cloudian-s3.log.20141119
Verified manually that it reopens a new connection after IOException.
> The broken s3n read retry logic causes a wrong output being committed
> ---------------------------------------------------------------------
>
> Key: HADOOP-11730
> URL: https://issues.apache.org/jira/browse/HADOOP-11730
> Project: Hadoop Common
> Issue Type: Bug
> Components: fs/s3
> Affects Versions: 2.6.0
> Environment: HDP 2.2
> Reporter: Takenori Sato
> Assignee: Takenori Sato
> Attachments: HADOOP-11730-branch-2.6.0.001.patch
>
>
> s3n attempts to read again when it encounters IOException during read. But the current logic does not reopen the connection, thus, it ends up with no-op, and committing the wrong(truncated) output.
> Here's a stack trace as an example.
> {quote}
> 2015-03-13 20:17:24,835 [TezChild] INFO org.apache.pig.backend.hadoop.executionengine.tez.runtime.PigProcessor - Starting output org.apache.tez.mapreduce.output.MROutput@52008dbd to vertex scope-12
> 2015-03-13 20:17:24,866 [TezChild] DEBUG org.jets3t.service.impl.rest.httpclient.HttpMethodReleaseInputStream - Released HttpMethod as its response data stream threw an exception
> org.apache.http.ConnectionClosedException: Premature end of Content-Length delimited message body (expected: 296587138; received: 155648
> at org.apache.http.impl.io.ContentLengthInputStream.read(ContentLengthInputStream.java:184)
> at org.apache.http.conn.EofSensorInputStream.read(EofSensorInputStream.java:138)
> at org.jets3t.service.io.InterruptableInputStream.read(InterruptableInputStream.java:78)
> at org.jets3t.service.impl.rest.httpclient.HttpMethodReleaseInputStream.read(HttpMethodReleaseInputStream.java:146)
> at org.apache.hadoop.fs.s3native.NativeS3FileSystem$NativeS3FsInputStream.read(NativeS3FileSystem.java:145)
> at java.io.BufferedInputStream.read1(BufferedInputStream.java:273)
> at java.io.BufferedInputStream.read(BufferedInputStream.java:334)
> at java.io.DataInputStream.read(DataInputStream.java:100)
> at org.apache.hadoop.util.LineReader.fillBuffer(LineReader.java:180)
> at org.apache.hadoop.util.LineReader.readDefaultLine(LineReader.java:216)
> at org.apache.hadoop.util.LineReader.readLine(LineReader.java:174)
> at org.apache.hadoop.mapreduce.lib.input.LineRecordReader.nextKeyValue(LineRecordReader.java:185)
> at org.apache.pig.builtin.PigStorage.getNext(PigStorage.java:259)
> at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigRecordReader.nextKeyValue(PigRecordReader.java:204)
> at org.apache.tez.mapreduce.lib.MRReaderMapReduce.next(MRReaderMapReduce.java:116)
> at org.apache.pig.backend.hadoop.executionengine.tez.plan.operator.POSimpleTezLoad.getNextTuple(POSimpleTezLoad.java:106)
> at org.apache.pig.backend.hadoop.executionengine.physicalLayer.PhysicalOperator.processInput(PhysicalOperator.java:307)
> at org.apache.pig.backend.hadoop.executionengine.physicalLayer.relationalOperators.POForEach.getNextTuple(POForEach.java:246)
> at org.apache.pig.backend.hadoop.executionengine.physicalLayer.PhysicalOperator.processInput(PhysicalOperator.java:307)
> at org.apache.pig.backend.hadoop.executionengine.physicalLayer.relationalOperators.POFilter.getNextTuple(POFilter.java:91)
> at org.apache.pig.backend.hadoop.executionengine.physicalLayer.PhysicalOperator.processInput(PhysicalOperator.java:307)
> at org.apache.pig.backend.hadoop.executionengine.tez.plan.operator.POStoreTez.getNextTuple(POStoreTez.java:117)
> at org.apache.pig.backend.hadoop.executionengine.tez.runtime.PigProcessor.runPipeline(PigProcessor.java:313)
> at org.apache.pig.backend.hadoop.executionengine.tez.runtime.PigProcessor.run(PigProcessor.java:192)
> at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:324)
> at org.apache.tez.runtime.task.TezTaskRunner$TaskRunnerCallable$1.run(TezTaskRunner.java:176)
> at org.apache.tez.runtime.task.TezTaskRunner$TaskRunnerCallable$1.run(TezTaskRunner.java:168)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
> at org.apache.tez.runtime.task.TezTaskRunner$TaskRunnerCallable.call(TezTaskRunner.java:168)
> at org.apache.tez.runtime.task.TezTaskRunner$TaskRunnerCallable.call(TezTaskRunner.java:163)
> at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> 2015-03-13 20:17:24,867 [TezChild] INFO org.apache.hadoop.fs.s3native.NativeS3FileSystem - Received IOException while reading 'user/hadoop/tsato/readlarge/input/cloudian-s3.log.20141119', attempting to reopen.
> 2015-03-13 20:17:24,867 [TezChild] DEBUG org.jets3t.service.impl.rest.httpclient.HttpMethodReleaseInputStream - Released HttpMethod as its response data stream is fully consumed
> 2015-03-13 20:17:24,868 [TezChild] INFO org.apache.tez.dag.app.TaskAttemptListenerImpTezDag - Commit go/no-go request from attempt_1426245338920_0001_1_00_000004_0
> 2015-03-13 20:17:24,868 [TezChild] INFO org.apache.tez.dag.app.dag.impl.TaskImpl - attempt_1426245338920_0001_1_00_000004_0 given a go for committing the task output.
> {quote}
> It seems this is a regression, which was introduced by the following optimizations.
> https://issues.apache.org/jira/browse/HADOOP-10589
> https://issues.apache.org/jira/browse/HADOOP-10457
> Also, test cases should be reviewed so that it covers this scenario.
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