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Posted to issues@spark.apache.org by "Jeff Zhang (JIRA)" <ji...@apache.org> on 2016/08/24 07:38:20 UTC
[jira] [Created] (SPARK-17210) sparkr.zip is not distributed to
executors when run sparkr in RStudio
Jeff Zhang created SPARK-17210:
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Summary: sparkr.zip is not distributed to executors when run sparkr in RStudio
Key: SPARK-17210
URL: https://issues.apache.org/jira/browse/SPARK-17210
Project: Spark
Issue Type: Bug
Components: SparkR
Affects Versions: 2.0.0
Reporter: Jeff Zhang
Here's the code to reproduce this issue.
{code}
Sys.setenv(SPARK_HOME="/Users/jzhang/github/spark")
.libPaths(c(file.path(Sys.getenv(), "R", "lib"), .libPaths()))
library(SparkR)
sparkR.session(master="yarn-client", sparkConfig = list(spark.executor.instances="1"))
df <- as.DataFrame(mtcars)
head(df)
{code}
And this is the exception in executor log.
{noformat}
16/08/24 15:33:45 INFO BufferedStreamThread: Fatal error: cannot open file '/Users/jzhang/Temp/hadoop_tmp/nm-local-dir/usercache/jzhang/appcache/application_1471846125517_0022/container_1471846125517_0022_01_000002/sparkr/SparkR/worker/daemon.R': No such file or directory
16/08/24 15:33:55 ERROR Executor: Exception in task 0.0 in stage 3.0 (TID 6)
java.net.SocketTimeoutException: Accept timed out
at java.net.PlainSocketImpl.socketAccept(Native Method)
at java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:404)
at java.net.ServerSocket.implAccept(ServerSocket.java:545)
at java.net.ServerSocket.accept(ServerSocket.java:513)
at org.apache.spark.api.r.RRunner$.createRWorker(RRunner.scala:367)
at org.apache.spark.api.r.RRunner.compute(RRunner.scala:69)
at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:49)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:283)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:70)
at org.apache.spark.scheduler.Task.run(Task.scala:86)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
{noformat}
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