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Posted to commits@airavata.apache.org by ma...@apache.org on 2017/08/03 16:02:06 UTC
[50/50] [abbrv] airavata git commit: Merge branch 'prep-master-merge'
Merge branch 'prep-master-merge'
Merging develop to master
Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/21a75058
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/21a75058
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/21a75058
Branch: refs/heads/master
Commit: 21a750580e9e59f8c66cb6bae13de9f3ffde4e1b
Parents: 983225c 36edde6
Author: Marcus Christie <ma...@apache.org>
Authored: Thu Aug 3 11:59:32 2017 -0400
Committer: Marcus Christie <ma...@apache.org>
Committed: Thu Aug 3 11:59:32 2017 -0400
----------------------------------------------------------------------
README | 3 -
airavata-api/airavata-api-server/pom.xml | 15 +
.../airavata/api/server/AiravataAPIServer.java | 8 +-
.../server/handler/AiravataServerHandler.java | 91 +-
.../security/AiravataSecurityManager.java | 42 -
.../DefaultAiravataSecurityManager.java | 272 -
.../api/server/security/IdentityContext.java | 42 -
.../airavata/api/server/security/Main.java | 178 -
.../server/security/SecurityManagerFactory.java | 59 -
.../server/security/authzcache/AuthzCache.java | 60 -
.../security/authzcache/AuthzCacheEntry.java | 62 -
.../security/authzcache/AuthzCacheIndex.java | 89 -
.../security/authzcache/AuthzCacheManager.java | 79 -
.../authzcache/AuthzCacheManagerFactory.java | 59 -
.../security/authzcache/AuthzCachedStatus.java | 33 -
.../authzcache/DefaultAuthzCacheManager.java | 105 -
.../security/interceptor/SecurityCheck.java | 35 -
.../interceptor/SecurityInterceptor.java | 82 -
.../security/interceptor/SecurityModule.java | 42 -
.../security/oauth/DefaultOAuthClient.java | 90 -
.../server/security/xacml/DefaultPAPClient.java | 124 -
.../server/security/xacml/DefaultXACMLPEP.java | 132 -
.../java/org/apache/airavata/api/Airavata.java | 370 +-
.../airavata/api/airavata_apiConstants.java | 28 +-
.../main/resources/lib/airavata/Airavata.cpp | 104 +-
.../src/main/resources/lib/airavata/Airavata.h | 82 +-
.../lib/airavata/Airavata_server.skeleton.cpp | 6 +-
.../resources/lib/airavata/airavata_api_types.h | 1 +
.../lib/airavata/airavata_data_models_types.h | 2 +
.../lib/airavata/airavata_errors_types.cpp | 205 +-
.../lib/airavata/airavata_errors_types.h | 44 +
.../application_deployment_model_types.cpp | 24 +-
.../application_deployment_model_types.h | 12 +-
.../airavata/compute_resource_model_types.cpp | 134 +-
.../lib/airavata/compute_resource_model_types.h | 56 +-
.../lib/airavata/db_event_model_constants.cpp | 34 +
.../lib/airavata/db_event_model_constants.h | 41 +
.../lib/airavata/db_event_model_types.cpp | 627 +
.../lib/airavata/db_event_model_types.h | 318 +
.../lib/airavata/messaging_events_types.cpp | 8 +-
.../lib/airavata/messaging_events_types.h | 3 +-
.../airavata/replica_catalog_models_types.cpp | 726 +-
.../lib/airavata/replica_catalog_models_types.h | 274 +-
.../airavata/tenant_profile_model_constants.cpp | 34 +
.../airavata/tenant_profile_model_constants.h | 41 +
.../lib/airavata/tenant_profile_model_types.cpp | 675 +
.../lib/airavata/tenant_profile_model_types.h | 329 +
.../lib/airavata/user_profile_model_types.cpp | 239 +-
.../lib/airavata/user_profile_model_types.h | 59 +-
.../lib/airavata/workspace_model_types.cpp | 106 +-
.../lib/airavata/workspace_model_types.h | 15 +-
.../resources/lib/Airavata/API/Airavata.php | 80 +-
.../resources/lib/Airavata/API/Error/Types.php | 82 +
.../Model/AppCatalog/AppDeployment/Types.php | 25 +-
.../Model/AppCatalog/ComputeResource/Types.php | 142 +-
.../lib/Airavata/Model/Application/Io/Types.php | 6 +-
.../lib/Airavata/Model/Data/Replica/Types.php | 572 +-
.../lib/Airavata/Model/Dbevent/Types.php | 573 +
.../Airavata/Model/Messaging/Event/Types.php | 2 +
.../lib/Airavata/Model/Tenant/Types.php | 634 +
.../resources/lib/Airavata/Model/User/Types.php | 279 +-
.../lib/Airavata/Model/Workspace/Types.php | 135 +-
.../Iam/Admin/Services/CPI/Error/Types.php | 95 +
.../Iam/Admin/Services/CPI/IamAdminServices.php | 3196 ++++
.../Service/Iam/Admin/Services/CPI/Types.php | 33 +
.../Service/Profile/Tenant/CPI/Error/Types.php | 95 +
.../Profile/Tenant/CPI/TenantProfileService.php | 2437 ++++
.../Service/Profile/Tenant/CPI/Types.php | 33 +
.../lib/Airavata/Service/Profile/Types.php | 20 +
.../Service/Profile/User/CPI/Error/Types.php | 95 +
.../Airavata/Service/Profile/User/CPI/Types.php | 33 +
.../Profile/User/CPI/UserProfileService.php | 2025 +++
.../lib/apache/airavata/api/Airavata-remote | 18 +-
.../lib/apache/airavata/api/Airavata.py | 70 +-
.../lib/apache/airavata/api/error/ttypes.py | 76 +
.../resources/lib/apache/airavata/api/ttypes.py | 1 +
.../model/appcatalog/appdeployment/ttypes.py | 19 +-
.../model/appcatalog/computeresource/ttypes.py | 86 +-
.../airavata/model/data/replica/ttypes.py | 430 +-
.../apache/airavata/model/dbevent/__init__.py | 1 +
.../apache/airavata/model/dbevent/constants.py | 11 +
.../lib/apache/airavata/model/dbevent/ttypes.py | 494 +
.../airavata/model/messaging/event/ttypes.py | 3 +
.../apache/airavata/model/tenant/__init__.py | 1 +
.../apache/airavata/model/tenant/constants.py | 11 +
.../lib/apache/airavata/model/tenant/ttypes.py | 488 +
.../lib/apache/airavata/model/ttypes.py | 2 +
.../lib/apache/airavata/model/user/ttypes.py | 231 +-
.../apache/airavata/model/workspace/ttypes.py | 130 +-
.../apache/airavata/model/ComponentState.java | 28 +-
.../apache/airavata/model/ComponentStatus.java | 28 +-
.../org/apache/airavata/model/EdgeModel.java | 28 +-
.../org/apache/airavata/model/NodeModel.java | 28 +-
.../org/apache/airavata/model/PortModel.java | 28 +-
.../apache/airavata/model/WorkflowModel.java | 28 +-
.../apache/airavata/model/WorkflowState.java | 28 +-
.../apache/airavata/model/WorkflowStatus.java | 28 +-
.../ApplicationDeploymentDescription.java | 145 +-
.../appdeployment/ApplicationModule.java | 28 +-
.../appcatalog/appdeployment/CommandObject.java | 28 +-
.../appcatalog/appdeployment/SetEnvPaths.java | 28 +-
.../ApplicationInterfaceDescription.java | 28 +-
.../appcatalog/computeresource/BatchQueue.java | 251 +-
.../computeresource/CloudJobSubmission.java | 28 +-
.../ComputeResourceDescription.java | 432 +-
.../appcatalog/computeresource/DMType.java | 28 +-
.../appcatalog/computeresource/FileSystems.java | 28 +-
.../computeresource/GlobusJobSubmission.java | 28 +-
.../computeresource/JobManagerCommand.java | 28 +-
.../computeresource/JobSubmissionInterface.java | 28 +-
.../computeresource/JobSubmissionProtocol.java | 28 +-
.../computeresource/LOCALSubmission.java | 28 +-
.../appcatalog/computeresource/MonitorMode.java | 28 +-
.../computeresource/ProviderName.java | 28 +-
.../computeresource/ResourceJobManager.java | 28 +-
.../computeresource/ResourceJobManagerType.java | 32 +-
.../computeresource/SSHJobSubmission.java | 28 +-
.../computeresource/UnicoreJobSubmission.java | 28 +-
.../ComputeResourcePreference.java | 28 +-
.../gatewayprofile/GatewayResourceProfile.java | 28 +-
.../gatewayprofile/StoragePreference.java | 28 +-
.../StorageResourceDescription.java | 28 +-
.../UserComputeResourcePreference.java | 28 +-
.../UserResourceProfile.java | 28 +-
.../UserStoragePreference.java | 28 +-
.../airavata/model/application/io/DataType.java | 28 +-
.../application/io/InputDataObjectType.java | 91 +-
.../application/io/OutputDataObjectType.java | 28 +-
.../airavata/model/commons/ErrorModel.java | 28 +-
.../model/commons/ValidationResults.java | 28 +-
.../airavata/model/commons/ValidatorResult.java | 28 +-
.../commons/airavata_commonsConstants.java | 28 +-
.../credential/store/CertificateCredential.java | 28 +-
.../model/credential/store/CommunityUser.java | 28 +-
.../credential/store/CredentialOwnerType.java | 28 +-
.../credential/store/CredentialSummary.java | 28 +-
.../credential/store/PasswordCredential.java | 28 +-
.../model/credential/store/SSHCredential.java | 28 +-
.../model/credential/store/SummaryType.java | 28 +-
.../credential_store_data_modelsConstants.java | 28 +-
.../airavata/model/data/movement/DMType.java | 28 +-
.../data/movement/DataMovementInterface.java | 28 +-
.../data/movement/DataMovementProtocol.java | 28 +-
.../data/movement/GridFTPDataMovement.java | 28 +-
.../model/data/movement/LOCALDataMovement.java | 28 +-
.../model/data/movement/SCPDataMovement.java | 28 +-
.../model/data/movement/SecurityProtocol.java | 28 +-
.../data/movement/UnicoreDataMovement.java | 28 +-
.../model/data/replica/DataProductModel.java | 112 +-
.../model/data/replica/DataProductType.java | 28 +-
.../data/replica/DataReplicaLocationModel.java | 72 +-
.../data/replica/ReplicaLocationCategory.java | 28 +-
.../data/replica/ReplicaPersistentType.java | 28 +-
.../apache/airavata/model/dbevent/CrudType.java | 68 +
.../airavata/model/dbevent/DBEventMessage.java | 622 +
.../model/dbevent/DBEventMessageContext.java | 387 +
.../model/dbevent/DBEventPublisher.java | 411 +
.../model/dbevent/DBEventPublisherContext.java | 641 +
.../model/dbevent/DBEventSubscriber.java | 406 +
.../airavata/model/dbevent/DBEventType.java | 62 +
.../airavata/model/dbevent/EntityType.java | 80 +
.../model/error/AiravataClientException.java | 28 +-
.../airavata/model/error/AiravataErrorType.java | 28 +-
.../model/error/AiravataSystemException.java | 28 +-
.../model/error/AuthenticationException.java | 28 +-
.../model/error/AuthorizationException.java | 28 +-
.../model/error/DuplicateEntryException.java | 413 +
.../error/ExperimentNotFoundException.java | 28 +-
.../model/error/InvalidRequestException.java | 28 +-
.../model/error/LaunchValidationException.java | 28 +-
.../model/error/ProjectNotFoundException.java | 28 +-
.../airavata/model/error/TimedOutException.java | 28 +-
.../airavata/model/error/ValidationResults.java | 28 +-
.../airavata/model/error/ValidatorResult.java | 28 +-
.../model/experiment/ExperimentModel.java | 28 +-
.../experiment/ExperimentSearchFields.java | 28 +-
.../model/experiment/ExperimentStatistics.java | 28 +-
.../experiment/ExperimentSummaryModel.java | 28 +-
.../model/experiment/ExperimentType.java | 28 +-
.../model/experiment/ProjectSearchFields.java | 28 +-
.../experiment/UserConfigurationDataModel.java | 28 +-
.../apache/airavata/model/group/GroupModel.java | 28 +-
.../model/group/ResourcePermissionType.java | 28 +-
.../airavata/model/group/ResourceType.java | 28 +-
.../org/apache/airavata/model/job/JobModel.java | 28 +-
.../event/ExperimentStatusChangeEvent.java | 28 +-
.../messaging/event/ExperimentSubmitEvent.java | 28 +-
.../model/messaging/event/JobIdentifier.java | 28 +-
.../messaging/event/JobStatusChangeEvent.java | 28 +-
.../event/JobStatusChangeRequestEvent.java | 28 +-
.../airavata/model/messaging/event/Message.java | 28 +-
.../model/messaging/event/MessageLevel.java | 28 +-
.../model/messaging/event/MessageType.java | 33 +-
.../messaging/event/ProcessIdentifier.java | 28 +-
.../event/ProcessStatusChangeEvent.java | 28 +-
.../event/ProcessStatusChangeRequestEvent.java | 28 +-
.../messaging/event/ProcessSubmitEvent.java | 28 +-
.../messaging/event/ProcessTerminateEvent.java | 28 +-
.../model/messaging/event/TaskIdentifier.java | 28 +-
.../messaging/event/TaskOutputChangeEvent.java | 28 +-
.../messaging/event/TaskStatusChangeEvent.java | 28 +-
.../event/TaskStatusChangeRequestEvent.java | 28 +-
.../parallelism/ApplicationParallelismType.java | 28 +-
.../airavata/model/process/ProcessModel.java | 28 +-
.../ComputationalResourceSchedulingModel.java | 28 +-
.../airavata/model/security/AuthzToken.java | 28 +-
.../airavata/model/status/ExperimentState.java | 28 +-
.../airavata/model/status/ExperimentStatus.java | 28 +-
.../apache/airavata/model/status/JobState.java | 28 +-
.../apache/airavata/model/status/JobStatus.java | 28 +-
.../airavata/model/status/ProcessState.java | 28 +-
.../airavata/model/status/ProcessStatus.java | 28 +-
.../airavata/model/status/QueueStatusModel.java | 28 +-
.../apache/airavata/model/status/TaskState.java | 28 +-
.../airavata/model/status/TaskStatus.java | 28 +-
.../airavata/model/task/DataStageType.java | 28 +-
.../model/task/DataStagingTaskModel.java | 28 +-
.../model/task/EnvironmentSetupTaskModel.java | 28 +-
.../model/task/JobSubmissionTaskModel.java | 28 +-
.../airavata/model/task/MonitorTaskModel.java | 28 +-
.../apache/airavata/model/task/TaskModel.java | 28 +-
.../apache/airavata/model/task/TaskTypes.java | 28 +-
.../apache/airavata/model/tenant/Tenant.java | 1580 ++
.../model/tenant/TenantApprovalStatus.java | 80 +
.../airavata/model/user/NSFDemographics.java | 177 +-
.../org/apache/airavata/model/user/Status.java | 28 +-
.../airavata/model/user/USCitizenship.java | 28 +-
.../apache/airavata/model/user/UserProfile.java | 910 +-
.../apache/airavata/model/user/disability.java | 28 +-
.../apache/airavata/model/user/ethnicity.java | 28 +-
.../org/apache/airavata/model/user/race.java | 28 +-
.../model/user/user_profile_modelConstants.java | 28 +-
.../airavata/model/workspace/Gateway.java | 358 +-
.../model/workspace/GatewayApprovalStatus.java | 33 +-
.../apache/airavata/model/workspace/Group.java | 28 +-
.../airavata/model/workspace/Notification.java | 28 +-
.../model/workspace/NotificationPriority.java | 28 +-
.../airavata/model/workspace/Project.java | 28 +-
.../apache/airavata/model/workspace/User.java | 28 +-
airavata-services/pom.xml | 70 +
.../iam-admin-services-core/pom.xml | 67 +
.../core/impl/TenantManagementKeycloakImpl.java | 604 +
.../interfaces/TenantManagementInterface.java | 149 +
.../services/core/tests/SetupNewGateway.java | 117 +
airavata-services/profile-service/pom.xml | 39 +
.../java-client-samples/pom.xml | 37 +
.../client/samples/TenantProfileSample.java | 61 +
.../client/samples/UserProfileSample.java | 124 +
.../client/util/ProfileServiceClientUtil.java | 47 +
.../resources/profile-client-sample.properties | 29 +
.../profile-service-client-sdks/pom.xml | 34 +
.../profile-service-commons/pom.xml | 117 +
.../repositories/AbstractRepository.java | 124 +
.../commons/tenant/entities/GatewayEntity.java | 286 +
.../user/entities/NSFDemographicsEntity.java | 108 +
.../user/entities/UserProfileEntity.java | 334 +
.../profile/commons/utils/Committer.java | 27 +
.../profile/commons/utils/JPAConstants.java | 34 +
.../service/profile/commons/utils/JPAUtils.java | 79 +
.../commons/utils/ObjectMapperSingleton.java | 39 +
.../profile/commons/utils/QueryConstants.java | 33 +
.../service/profile/commons/utils/Utils.java | 147 +
.../src/main/resources/META-INF/persistence.xml | 35 +
.../profile-service-server/pom.xml | 59 +
.../handlers/IamAdminServicesHandler.java | 261 +
.../handlers/TenantProfileServiceHandler.java | 226 +
.../handlers/UserProfileServiceHandler.java | 208 +
.../profile/server/ProfileServiceServer.java | 181 +
.../profile/utils/ProfileServiceUtils.java | 70 +
.../profile-service-stubs/pom.xml | 37 +
.../client/ProfileServiceClientFactory.java | 78 +
.../admin/services/cpi/IamAdminServices.java | 12835 +++++++++++++++++
.../exception/IamAdminServicesException.java | 407 +
.../cpi/iam_admin_services_cpiConstants.java | 59 +
.../tenant/cpi/TenantProfileService.java | 9718 +++++++++++++
.../TenantProfileServiceException.java | 407 +
.../tenant/cpi/profile_tenant_cpiConstants.java | 59 +
.../profile/user/cpi/UserProfileService.java | 7894 ++++++++++
.../exception/UserProfileServiceException.java | 407 +
.../user/cpi/profile_user_cpiConstants.java | 59 +
.../profile-service/profile-tenant-core/pom.xml | 40 +
.../repositories/TenantProfileRepository.java | 105 +
.../profile-service/profile-user-core/pom.xml | 85 +
.../UserProfileRegistryException.java | 28 +
.../repositories/UserProfileRepository.java | 118 +
.../src/main/resources/user_profile_catalog.sql | 84 +
.../repositories/WorkspaceRepositoryTest.java | 176 +
airavata-services/services-security/pom.xml | 92 +
.../security/AiravataSecurityManager.java | 43 +
.../DefaultAiravataSecurityManager.java | 273 +
.../service/security/IdentityContext.java | 44 +
.../security/KeyCloakSecurityManager.java | 304 +
.../apache/airavata/service/security/Main.java | 179 +
.../security/SecurityManagerFactory.java | 60 +
.../service/security/authzcache/AuthzCache.java | 61 +
.../security/authzcache/AuthzCacheEntry.java | 63 +
.../security/authzcache/AuthzCacheIndex.java | 90 +
.../security/authzcache/AuthzCacheManager.java | 80 +
.../authzcache/AuthzCacheManagerFactory.java | 60 +
.../security/authzcache/AuthzCachedStatus.java | 34 +
.../authzcache/DefaultAuthzCacheManager.java | 106 +
.../security/interceptor/SecurityCheck.java | 37 +
.../interceptor/SecurityInterceptor.java | 83 +
.../security/interceptor/SecurityModule.java | 43 +
.../security/oauth/DefaultOAuthClient.java | 91 +
.../security/xacml/DefaultPAPClient.java | 125 +
.../service/security/xacml/DefaultXACMLPEP.java | 133 +
dev-tools/ansible/README.md | 1 +
dev-tools/ansible/airavata-iam-setup.yml | 8 +
dev-tools/ansible/apiserver.yml | 34 +
dev-tools/ansible/database.yml | 11 +
.../inventories/airavata-iam/group_vars/all.yml | 16 +
.../ansible/inventories/airavata-iam/hosts | 8 +
.../inventories/develop/group_vars/all.yml | 9 +
dev-tools/ansible/inventories/develop/hosts | 2 +-
.../PICKSC-Production/group_vars/pga/vars.yml | 75 +
.../PICKSC-Production/group_vars/pga/vault.yml | 18 +
.../inventories/scigap/PICKSC-Production/hosts | 21 +
.../scigap/develop/files/airavata.jks | 76 +
.../scigap/develop/files/airavata_sym.jks | 30 +
.../scigap/develop/files/client_truststore.jks | 271 +
.../scigap/develop/files/keycloak.jks | 143 +
.../scigap/develop/group_vars/all/vars.yml | 141 +
.../scigap/develop/group_vars/all/vault.yml | 34 +
.../ansible/inventories/scigap/develop/hosts | 23 +
.../scigap/develop/pga_config/scigap/vars.yml | 58 +
.../scigap/develop/pga_config/scigap/vault.yml | 18 +
.../scigap/develop/pga_config/seagrid/vars.yml | 66 +
.../scigap/develop/pga_config/seagrid/vault.yml | 18 +
.../develop/pga_config/testdrive/vars.yml | 65 +
.../develop/pga_config/testdrive/vault.yml | 18 +
.../inventories/scigap/dreg-production/hosts | 10 +-
.../production/files/client_truststore.jks | 395 +-
.../scigap/production/files/keycloak.jks | 143 +
.../production/files/pga_config_0.17.php.j2 | 256 +
.../scigap/production/group_vars/all/vars.yml | 24 +-
.../scigap/production/group_vars/all/vault.yml | 50 +-
.../ansible/inventories/scigap/production/hosts | 14 +-
.../production/pga_config/accord/vars.yml | 66 +
.../production/pga_config/accord/vault.yml | 18 +
.../production/pga_config/brandeis/vars.yml | 10 +-
.../production/pga_config/brandeis/vault.yml | 34 +-
.../production/pga_config/cinetvtech/vars.yml | 55 -
.../production/pga_config/cinetvtech/vault.yml | 18 -
.../production/pga_config/gatech/vars.yml | 61 +
.../production/pga_config/gatech/vault.yml | 18 +
.../production/pga_config/georgiastate/vars.yml | 16 +-
.../pga_config/georgiastate/vault.yml | 34 +-
.../production/pga_config/iugateway/vars.yml | 14 +-
.../production/pga_config/iugateway/vault.yml | 34 +-
.../scigap/production/pga_config/lsu/vars.yml | 10 +-
.../scigap/production/pga_config/lsu/vault.yml | 34 +-
.../pga_config/nanoconfinement/vars.yml | 16 +-
.../pga_config/nanoconfinement/vault.yml | 33 +-
.../production/pga_config/nanoshape/vars.yml | 65 +
.../production/pga_config/nanoshape/vault.yml | 18 +
.../pga_config/newmexicostate/vars.yml | 61 +
.../pga_config/newmexicostate/vault.yml | 18 +
.../scigap/production/pga_config/nsg/vars.yml | 13 +-
.../scigap/production/pga_config/nsg/vault.yml | 34 +-
.../production/pga_config/oiitandy/vars.yml | 14 +-
.../production/pga_config/oiitandy/vault.yml | 34 +-
.../scigap/production/pga_config/oscer/vars.yml | 14 +-
.../production/pga_config/oscer/vault.yml | 33 +-
.../production/pga_config/phasta/vars.yml | 14 +-
.../production/pga_config/phasta/vault.yml | 34 +-
.../production/pga_config/scigap/vars.yml | 23 +-
.../production/pga_config/scigap/vault.yml | 34 +-
.../production/pga_config/seagrid/vars.yml | 19 +-
.../production/pga_config/seagrid/vault.yml | 34 +-
.../production/pga_config/simvascular/vars.yml | 10 +-
.../production/pga_config/simvascular/vault.yml | 34 +-
.../production/pga_config/southdakota/vars.yml | 14 +-
.../production/pga_config/southdakota/vault.yml | 33 +-
.../pga_config/southernillinois/vars.yml | 20 +-
.../pga_config/southernillinois/vault.yml | 34 +-
.../production/pga_config/testdrive/vars.yml | 18 +-
.../production/pga_config/testdrive/vault.yml | 34 +-
.../scigap/production/pga_config/uab/vars.yml | 61 +
.../scigap/production/pga_config/uab/vault.yml | 18 +
.../production/pga_config/ultrascan/vars.yml | 18 +-
.../scigap/production/pga_config/utah/vars.yml | 16 +-
.../scigap/production/pga_config/utah/vault.yml | 34 +-
.../testing-0.17-scigap/group_vars/all/vars.yml | 5 +
.../testing-0.17-scigap/group_vars/pga/vars.yml | 18 +-
.../group_vars/pga/vault.yml | 34 +-
.../testing-0.17/files/client_truststore.jks | 271 +
.../testing-0.17/group_vars/all/vars.yml | 15 +-
.../testing-0.17/group_vars/all/vault.yml | 18 +-
.../testing-0.17/group_vars/pga/vars.yml | 18 +-
.../testing-0.17/group_vars/pga/vault.yml | 34 +-
dev-tools/ansible/keycloak.yml | 9 +
dev-tools/ansible/pga-scigap-dev.yml | 26 +
dev-tools/ansible/pga-scigap-prod.yml | 6 +-
.../ansible/roles/api-orch/defaults/main.yml | 10 +-
dev-tools/ansible/roles/api-orch/tasks/main.yml | 2 +
.../templates/airavata-server.properties.j2 | 40 +-
.../ansible/roles/database/tasks/keycloak.yml | 38 +
dev-tools/ansible/roles/database/tasks/main.yml | 3 +
dev-tools/ansible/roles/database/vars/main.yml | 2 +
dev-tools/ansible/roles/gfac/defaults/main.yml | 2 +-
.../templates/airavata-server.properties.j2 | 13 +-
dev-tools/ansible/roles/java/tasks/main.yml | 6 +
dev-tools/ansible/roles/keycloak/README.md | 14 +
.../ansible/roles/keycloak/defaults/main.yml | 21 +
.../ansible/roles/keycloak/files/README.md | 36 +
dev-tools/ansible/roles/keycloak/tasks/main.yml | 185 +
.../templates/keycloak-hacluster-init.j2 | 49 +
.../templates/keycloak-standalone-init.j2 | 46 +
.../ansible/roles/keycloak/templates/module.j2 | 12 +
.../keycloak/templates/standalone-ha.xml.j2 | 533 +
.../roles/keycloak/templates/standalone.xml.j2 | 493 +
dev-tools/ansible/roles/pga/defaults/main.yml | 11 +
.../roles/pga/tasks/install_deps_CentOS_7.yml | 1 +
dev-tools/ansible/roles/pga/tasks/main.yml | 11 +-
.../roles/pga/templates/pga_config.php.j2 | 46 +-
.../ansible/roles/zookeeper/tasks/main.yml | 3 +
modules/commons/pom.xml | 1 -
.../common/utils/ApplicationSettings.java | 16 +
.../common/utils/DBEventManagerConstants.java | 99 +
.../airavata/common/utils/DBEventService.java | 42 +
.../airavata/common/utils/ServerSettings.java | 32 +-
.../src/main/resources/PBS_Groovy.template | 1 +
.../src/main/resources/SLURM_Groovy.template | 1 +
.../resources/airavata-default-xacml-policy.xml | 18 +-
.../main/resources/airavata-server.properties | 43 +-
.../src/main/resources/client_truststore.jks | Bin 2423 -> 5312 bytes
modules/db-event-manager/pom.xml | 41 +
.../db/event/manager/DBEventManagerRunner.java | 143 +
.../messaging/DBEventManagerException.java | 42 +
.../DBEventManagerMessagingFactory.java | 76 +
.../messaging/impl/DBEventMessageHandler.java | 112 +
.../db/event/manager/utils/Constants.java | 33 +
.../manager/utils/DbEventManagerZkUtils.java | 126 +
.../db-event-manager/src/test/java/Test.java | 25 +
modules/distribution/pom.xml | 84 +-
.../apache/airavata/gfac/cpi/GfacService.java | 2 +-
.../apache/airavata/gfac/core/GFacUtils.java | 75 +-
.../org/apache/airavata/gfac/core/Script.java | 1 +
.../gfac/core/cluster/RemoteCluster.java | 8 +-
.../gfac/core/context/ProcessContext.java | 26 +-
.../airavata/gfac/impl/BESRemoteCluster.java | 5 +-
.../airavata/gfac/impl/HPCRemoteCluster.java | 38 +-
.../airavata/gfac/impl/LocalRemoteCluster.java | 9 +-
.../airavata/gfac/impl/task/ArchiveTask.java | 14 +-
.../gfac/impl/task/SCPDataStageTask.java | 107 +-
.../gfac/impl/task/utils/StreamData.java | 22 +-
.../monitor/email/parser/UGEEmailParser.java | 4 +
modules/messaging/core/pom.xml | 6 +-
.../messaging/core/MessagingFactory.java | 30 +-
.../airavata/messaging/core/Publisher.java | 10 +-
.../messaging/core/impl/MessageConsumer.java | 94 +
.../messaging/core/impl/RabbitMQPublisher.java | 37 +
.../orchestrator/cpi/OrchestratorService.java | 3 +-
modules/registry-refactoring/pom.xml | 153 -
.../registry/core/RegistryException.java | 27 -
.../workspacecatalog/GatewayEntity.java | 220 -
.../workspacecatalog/NSFDemographicsEntity.java | 93 -
.../workspacecatalog/NotificationEntity.java | 109 -
.../workspacecatalog/ProjectEntity.java | 91 -
.../workspacecatalog/UserProfileEntity.java | 246 -
.../core/repositories/AbstractRepository.java | 97 -
.../workspacecatalog/GatewayRepository.java | 35 -
.../NotificationRepository.java | 34 -
.../workspacecatalog/ProjectRepository.java | 34 -
.../workspacecatalog/UserProfileRepository.java | 87 -
.../airavata/registry/core/utils/Committer.java | 26 -
.../registry/core/utils/JPAConstants.java | 30 -
.../airavata/registry/core/utils/JPAUtils.java | 82 -
.../core/utils/ObjectMapperSingleton.java | 38 -
.../registry/core/utils/QueryConstants.java | 41 -
.../airavata/registry/core/utils/Utils.java | 155 -
.../src/main/resources/META-INF/persistence.xml | 32 -
.../src/main/resources/workspace_catalog.sql | 125 -
.../repositories/WorkspaceRepositoryTest.java | 196 -
.../catalog/impl/ApplicationDeploymentImpl.java | 2 +
.../catalog/model/ApplicationDeployment.java | 10 +
.../core/app/catalog/model/BatchQueue.java | 24 +-
.../core/app/catalog/model/ComputeResource.java | 44 +
.../resources/AppDeploymentResource.java | 11 +
.../catalog/resources/BatchQueueResource.java | 20 +
.../resources/ComputeResourceResource.java | 42 +-
.../app/catalog/util/AppCatalogJPAUtils.java | 17 +-
.../util/AppCatalogThriftConversion.java | 13 +
.../catalog/resources/WorkerResource.java | 52 +-
.../catalog/impl/ReplicaCatalogImpl.java | 44 +
.../src/main/resources/appcatalog-derby.sql | 7 +
.../src/main/resources/appcatalog-mysql.sql | 7 +
.../replica/catalog/ReplicaCatalogTest.java | 2 +
.../airavata/registry/cpi/ReplicaCatalog.java | 3 +
.../registry-api-service/pom.xml | 5 +
.../registry/api/service/RegistryAPIServer.java | 31 +
.../service/handler/RegistryServerHandler.java | 50 +-
.../RegistryServiceDBEventHandler.java | 164 +
.../RegistryServiceDBEventMessagingFactory.java | 94 +
.../registry/api/service/util/Constants.java | 10 +
.../api/service/util/DatabaseCreator.java | 36 +-
.../airavata/registry/api/RegistryService.java | 8978 ++++++++----
.../api/exception/RegistryServiceException.java | 2 +-
.../DeltaScripts/appCatalog_schema_delta.sql | 30 +
.../sharingCatalog_schema_delta.sql | 10 +
...aCatalog_lowercase_user_data_dir_example.sql | 18 +
.../credentialStore_keycloak_migration.sql | 2 +
.../expCatalog_keycloak_migration.sql | 11 +
.../profileService_keycloak_migration.sql | 8 +
.../sharingCatalog_keycloak_migration.sql | 8 +
.../0.17-0.18/migration-notes.md | 17 +
.../org/apache/airavata/server/ServerMain.java | 12 +-
.../sharing-registry-server/pom.xml | 5 +
.../db/repositories/AbstractRepository.java | 12 +-
.../db/repositories/EntityRepository.java | 4 +-
.../repositories/GroupMembershipRepository.java | 42 +-
.../db/repositories/SharingRepository.java | 50 +-
.../db/repositories/UserGroupRepository.java | 37 +-
.../db/repositories/UserRepository.java | 18 +-
.../messaging/SharingServiceDBEventHandler.java | 248 +
.../SharingServiceDBEventMessagingFactory.java | 111 +
.../registry/server/SharingRegistryServer.java | 20 +
.../server/SharingRegistryServerHandler.java | 274 +-
.../sharing/registry/utils/Constants.java | 38 +
.../utils/ThriftDataModelConversion.java | 28 +
.../main/resources/sharing-registry-derby.sql | 2 +-
.../main/resources/sharing-registry-mysql.sql | 8 +-
.../SharingRegistryServerHandlerTest.java | 4 +
.../registry/SharingRegistryServiceTest.java | 6 +-
.../sharing-registry-stubs/pom.xml | 5 +
.../SharingRegistryServiceClientFactory.java | 1 +
.../sharing/registry/models/Domain.java | 19 -
.../models/DuplicateEntryException.java | 398 +
.../sharing/registry/models/Entity.java | 51 +-
.../registry/models/EntitySearchField.java | 19 -
.../sharing/registry/models/EntityType.java | 19 -
.../registry/models/GroupCardinality.java | 19 -
.../sharing/registry/models/GroupChildType.java | 23 -
.../registry/models/GroupMembership.java | 19 -
.../sharing/registry/models/GroupType.java | 19 -
.../sharing/registry/models/PermissionType.java | 19 -
.../registry/models/SearchCondition.java | 19 -
.../sharing/registry/models/SearchCriteria.java | 19 -
.../sharing/registry/models/Sharing.java | 19 -
.../models/SharingRegistryException.java | 19 -
.../sharing/registry/models/SharingType.java | 19 -
.../airavata/sharing/registry/models/User.java | 19 -
.../sharing/registry/models/UserGroup.java | 19 -
.../models/sharing_modelsConstants.java | 19 -
.../service/cpi/SharingRegistryService.java | 2651 +++-
.../sharing-service-docs/api-docs/index.html | 23 +-
.../api-docs/sharing_cpi.html | 36 +-
.../api-docs/sharing_models.html | 98 +-
.../sharing-service-docs/api-docs/style.css | 22 +-
.../thrift_models/sharing_cpi.thrift | 10 +-
.../thrift_models/sharing_models.thrift | 10 +
.../thrift_models/thrift-gen.sh | 4 +-
.../main/resources/airavata-server.properties | 30 +-
modules/user-profile-migration/.gitignore | 1 +
modules/user-profile-migration/pom.xml | 71 +-
.../apache/airavata/ISLoginCredentialsDAO.java | 78 -
.../apache/airavata/IdentityServerClient.java | 137 -
.../airavata/KeycloakIdentityServerClient.java | 172 +
.../org/apache/airavata/MigrationManager.java | 312 +-
.../UserProfileAiravataThriftClient.java | 44 -
.../org/apache/airavata/UserProfileDAO.java | 18 +
.../airavata/Wso2ISLoginCredentialsDAO.java | 78 +
.../airavata/Wso2IdentityServerClient.java | 161 +
.../user-profile-migration.properties.template | 35 +
modules/user-profile/pom.xml | 40 -
.../user-profile/user-profile-service/pom.xml | 50 -
.../user/profile/server/UserProfileServer.java | 157 -
.../server/UserProfileServiceHandler.java | 138 -
modules/user-profile/user-profile-stubs/pom.xml | 74 -
.../userprofile/cpi/UserProfileService.java | 7523 ----------
.../client/UserProfileServiceClientFactory.java | 3 +-
.../exception/UserProfileServiceException.java | 426 -
.../cpi/user_profile_cpiConstants.java | 76 -
pom.xml | 4 +-
.../airavata-apis/airavata_api.thrift | 10 +-
.../airavata-apis/airavata_errors.thrift | 9 +
.../airavata-apis/db_event_model.thrift | 81 +
.../airavata-apis/messaging_events.thrift | 3 +-
.../component-cpis/generate-cpi-stubs.sh | 2 +-
.../component-cpis/registry-api.thrift | 20 +-
.../component-cpis/user-profile-cpi.thrift | 2 +-
.../data-models/airavata_data_models.thrift | 6 +-
.../application_deployment_model.thrift | 3 +-
.../workspace_model.thrift | 42 +-
.../replica_catalog_models.thrift | 31 +-
.../compute_resource_model.thrift | 10 +-
.../user_resource_profile_model.thrift | 2 +-
.../group_manager_model.thrift | 48 -
.../user-group-models/user_profile_model.thrift | 185 -
.../group_manager_model.thrift | 48 +
.../tenant_profile_model.thrift | 65 +
.../user_profile_model.thrift | 196 +
.../generate-thrift-stubs.sh | 108 +-
.../service-cpis/generate-service-cpi-stubs.sh | 195 +
.../iam-admin-services-cpi.thrift | 99 +
.../iam_admin_services_cpi_errors.thrift | 32 +
.../profile-service/profile-service-cpi.thrift | 34 +
.../profile-tenant/profile-tenant-cpi.thrift | 80 +
.../profile_tenant_cpi_errors.thrift | 32 +
.../profile-user/profile-user-cpi.thrift | 75 +
.../profile-user/profile_user_cpi_errors.thrift | 32 +
602 files changed, 79828 insertions(+), 22557 deletions(-)
----------------------------------------------------------------------