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Jenkins build is still unstable: ctakes-trunk-compiletest #1117
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1117/display/redirect?page=changes>
Jenkins build is back to normal : ctakes-trunk-compiletest #1130
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Build failed in Jenkins: ctakes-trunk-compiletest #1129
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1129/display/redirect?page=changes>
Changes:
[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars
------------------------------------------
[...truncated 549.99 KB...]
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
T extends Object declared in interface Comparable
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
K extends Object declared in interface Map
V extends Object declared in interface Map
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
found: List,OffsetComparator
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
found: List
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class ThreadedUmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[INFO] 28 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.412s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.661s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.309s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.880s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.402s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.913s]
[INFO] ctakes-gui ........................................ SUCCESS [3.852s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.399s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.732s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.304s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.291s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.697s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [9.836s]
[INFO] Apache cTAKES dictionary lookup ................... FAILURE [2.779s]
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1:40.044s
[INFO] Finished at: Thu Nov 16 22:27:59 UTC 2017
[INFO] Final Memory: 57M/781M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
[ERROR] found: List
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped
Jenkins build is unstable: ctakes-trunk-compiletest #1128
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1128/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1127
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1127/display/redirect?page=changes>
Changes:
[seanfinan] Minor refactor (shorter names)
[seanfinan] Rewrite of Patient view cache
------------------------------------------
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-utils ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Compiling 26 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[92,28] [deprecation] open(Directory) in IndexReader has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[293,60] [deprecation] LUCENE_30 in Version has been deprecated
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/surefire-reports>
-------------------------------------------------------
T E S T S
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-core ---
[INFO]
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[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Compiling 229 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
found: TOP
where T is a type-variable:
T extends Object declared in class FSListIterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[INFO] 9 errors
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.987s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.772s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.382s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.814s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.312s]
[INFO] Apache cTAKES core ................................ FAILURE [3.341s]
[INFO] ctakes-gui ........................................ SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 38.299s
[INFO] Finished at: Thu Nov 16 20:28:29 UTC 2017
[INFO] Final Memory: 37M/411M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
[ERROR] found: TOP
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in class FSListIterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1126
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1126/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1125
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1125/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1124
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1124/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1123
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1123/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1122
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1122/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1121
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1121/display/redirect?page=changes>
Changes:
[seanfinan] FileTreeReader : Allow specification of a single file
------------------------------------------
[...truncated 806.39 KB...]
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
09 Nov 2017 16:32:58 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
09 Nov 2017 16:32:58 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
09 Nov 2017 16:32:58 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
09 Nov 2017 16:33:10 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Initializing ...
.
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Finished.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Initializing ...
.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Finished.
09 Nov 2017 16:33:13 INFO SentenceDetector - Starting processing.
09 Nov 2017 16:33:13 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
09 Nov 2017 16:33:13 INFO LvgAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO ContextDependentTokenizerAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO POSTagger - process(JCas)
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.332 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
[INFO] -------------------------------------------------------------
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.492s]
[INFO] ctakes-gui-res .................................... SUCCESS [21.969s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.227s]
[INFO] Apache cTAKES common type system .................. SUCCESS [22.039s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.231s]
[INFO] Apache cTAKES core ................................ SUCCESS [21.007s]
[INFO] ctakes-gui ........................................ SUCCESS [3.890s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.198s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [7.927s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.238s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.432s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.537s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [10.248s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.194s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [7.684s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [26.527s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.865s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [3.580s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.880s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.362s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.130s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.259s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.374s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.234s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.149s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [2.940s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.326s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.649s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [35.241s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.042s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.222s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.213s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.722s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:46.445s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.911s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:35.599s
[INFO] Finished at: Thu Nov 09 16:33:21 UTC 2017
[INFO] Final Memory: 71M/467M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1120
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1120/display/redirect?page=changes>
Changes:
[tmill] Removed unused and non-existent type.
------------------------------------------
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** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
08 Nov 2017 17:32:43 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
08 Nov 2017 17:32:43 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
08 Nov 2017 17:32:43 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Initializing ...
.
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 17:32:54 INFO SentenceDetector - Starting processing.
08 Nov 2017 17:32:54 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 17:32:54 INFO LvgAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO POSTagger - process(JCas)
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: recently
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: until 6 months ago
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.337 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.011s]
[INFO] ctakes-gui-res .................................... SUCCESS [4.390s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.450s]
[INFO] Apache cTAKES common type system .................. SUCCESS [9.711s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.688s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.435s]
[INFO] ctakes-gui ........................................ SUCCESS [3.870s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.453s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.253s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.453s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.510s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.800s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [14.408s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.031s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.791s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [31.593s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [6.611s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [16.493s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.480s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.620s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.432s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.665s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.506s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.402s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.420s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.069s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.533s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.880s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.033s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.688s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.361s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.972s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.251s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:26.465s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.566s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:12.007s
[INFO] Finished at: Wed Nov 08 17:33:02 UTC 2017
[INFO] Final Memory: 76M/577M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1119
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1119/display/redirect?page=changes>
Changes:
[tmill] New patient collector model working for coreference evaluation.
------------------------------------------
[...truncated 807.48 KB...]
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 16:34:50 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Initializing ...
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Initializing ...
.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Finished.
08 Nov 2017 16:34:53 INFO SentenceDetector - Starting processing.
08 Nov 2017 16:34:53 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 16:34:53 INFO LvgAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO POSTagger - process(JCas)
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.747 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
location: package org.apache.ctakes.coreference.util
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 3 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.509s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.822s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.688s]
[INFO] Apache cTAKES common type system .................. SUCCESS [40.156s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.379s]
[INFO] Apache cTAKES core ................................ SUCCESS [23.005s]
[INFO] ctakes-gui ........................................ SUCCESS [4.524s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.242s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.378s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.369s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.048s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.654s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [54.828s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.229s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.562s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.002s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.835s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.322s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.168s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.289s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.949s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.223s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.288s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.151s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.185s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.291s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [17.310s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.540s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.109s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.943s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.765s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.963s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.675s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:25.242s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.804s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7:16.896s
[INFO] Finished at: Wed Nov 08 16:35:01 UTC 2017
[INFO] Final Memory: 73M/631M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1118
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