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Posted to github@beam.apache.org by GitBox <gi...@apache.org> on 2020/09/12 00:49:54 UTC
[GitHub] [beam] youngoli commented on a change in pull request #12588: [BEAM-7009] Add Go SDK Standard Coders yaml tests.
youngoli commented on a change in pull request #12588:
URL: https://github.com/apache/beam/pull/12588#discussion_r486767704
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -81,24 +82,82 @@ func MakeElementEncoder(c *coder.Coder) ElementEncoder {
return &stringEncoder{}
case coder.Custom:
- return &customEncoder{
+ enc := &customEncoder{
t: c.Custom.Type,
enc: makeEncoder(c.Custom.Enc.Fn),
}
+ if c.Custom.Name != "schema" {
+ return enc
+ }
+ // Custom schema coding is shorthand for using beam infrastructure
+ // wrapped in a custom coder.
Review comment:
I don't really understand this comment, or how it relates to the check below.
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -117,17 +176,88 @@ func MakeElementDecoder(c *coder.Coder) ElementDecoder {
return &stringDecoder{}
case coder.Custom:
- return &customDecoder{
+ dec := &customDecoder{
t: c.Custom.Type,
dec: makeDecoder(c.Custom.Dec.Fn),
}
+ fmt.Println("getting decoder", c.Custom)
Review comment:
Looks like another debug println.
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -534,26 +1038,34 @@ func (*intervalWindowEncoder) EncodeSingle(elm typex.Window, w io.Writer) error
type intervalWindowDecoder struct{}
-func (*intervalWindowDecoder) Decode(r io.Reader) ([]typex.Window, error) {
+func (d *intervalWindowDecoder) Decode(r io.Reader) ([]typex.Window, error) {
// Encoding: upper bound and duration
n, err := coder.DecodeInt32(r) // #windows
ret := make([]typex.Window, n, n)
for i := int32(0); i < n; i++ {
- end, err := coder.DecodeEventTime(r)
- if err != nil {
- return nil, err
- }
- duration, err := coder.DecodeVarUint64(r)
+ w, err := d.DecodeSingle(r)
if err != nil {
return nil, err
}
- ret[i] = window.IntervalWindow{Start: mtime.FromMilliseconds(end.Milliseconds() - int64(duration)), End: end}
+ ret[i] = w
}
return ret, err
}
+func (*intervalWindowDecoder) DecodeSingle(r io.Reader) (typex.Window, error) {
+ end, err := coder.DecodeEventTime(r)
+ if err != nil {
+ return nil, err
+ }
+ duration, err := coder.DecodeVarInt(r)
Review comment:
What's the reason to switch from `DecodeVarUint64` to `DecodeVarInt` here?
##########
File path: sdks/go/test/regression/coders/fromyaml/fromyaml.go
##########
@@ -0,0 +1,415 @@
+// Licensed to the Apache Software Foundation (ASF) under one or more
+// contributor license agreements. See the NOTICE file distributed with
+// this work for additional information regarding copyright ownership.
+// The ASF licenses this file to You under the Apache License, Version 2.0
+// (the "License"); you may not use this file except in compliance with
+// the License. You may obtain a copy of the License at
+//
+// http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+// fromyaml generates a resource file from the standard_coders.yaml
+// file for use in these coder regression tests.
+//
+// It expects to be run in it's test directory, or via it's go test.
+package main
+
+import (
+ "bytes"
+ "fmt"
+ "io/ioutil"
+ "log"
+ "math"
+ "reflect"
+ "runtime/debug"
+ "strconv"
+ "strings"
+
+ "github.com/apache/beam/sdks/go/pkg/beam/core/graph/mtime"
+ "github.com/apache/beam/sdks/go/pkg/beam/core/graph/window"
+ "github.com/apache/beam/sdks/go/pkg/beam/core/runtime/exec"
+ "github.com/apache/beam/sdks/go/pkg/beam/core/runtime/graphx"
+ "github.com/apache/beam/sdks/go/pkg/beam/core/util/reflectx"
+ pipepb "github.com/apache/beam/sdks/go/pkg/beam/model/pipeline_v1"
+ "github.com/google/go-cmp/cmp"
+ "golang.org/x/text/encoding/charmap"
+ yaml "gopkg.in/yaml.v2"
+)
+
+var unimplementedCoders = map[string]bool{
+ "beam:coder:param_windowed_value:v1": true,
+ "beam:coder:timer:v1": true,
+}
+
+// Coder is a representation a serialized beam coder.
+type Coder struct {
+ Urn string `yaml:"urn,omitempty"`
+ Payload string `yaml:"payload,omitempty"`
+ Components []Coder `yaml:"components,omitempty"`
+ NonDeterministic bool `yaml:"non_deterministic,omitempty"`
+}
+
+type logger interface {
+ Errorf(string, ...interface{})
+ Logf(string, ...interface{})
+}
+
+// Spec is a set of conditions that a coder must pass.
+type Spec struct {
+ Coder Coder `yaml:"coder,omitempty"`
+ Nested *bool `yaml:"nested,omitempty"`
+ Examples yaml.MapSlice `yaml:"examples,omitempty"`
+ Log logger
+
+ id int // for generating coder ids.
+ coderPBs map[string]*pipepb.Coder
+}
+
+func (s *Spec) nextID() string {
+ ret := fmt.Sprintf("%d", s.id)
+ s.id++
+ return ret
+}
+
+func (s *Spec) testStandardCoder() (err error) {
+ if unimplementedCoders[s.Coder.Urn] {
+ log.Printf("skipping unimplemented coder urn: %v", s.Coder.Urn)
+ return nil
+ }
+ // Construct the coder proto equivalents.
+
+ // Only nested tests need to be run, since nestedness is a pre-portability
+ // concept.
+ // For legacy Java reasons, the row coder examples are all marked nested: false
+ // so we need to check that before skipping unnested tests.
+ if s.Coder.Urn != "beam:coder:row:v1" && s.Nested != nil && !*s.Nested {
+ log.Printf("skipping unnested coder spec: %v\n", s.Coder)
+ return nil
+ }
+
+ s.coderPBs = make(map[string]*pipepb.Coder)
+ id := s.parseCoder(s.Coder)
+ b := graphx.NewCoderUnmarshaller(s.coderPBs)
+ underTest, err := b.Coder(id)
+ if err != nil {
+ return fmt.Errorf("unable to create coder: %v", err)
+ }
+
+ defer func() {
+ if e := recover(); e != nil {
+ err = fmt.Errorf("panicked on coder %v || %v:\n\t%v :\n%s", underTest, s.Coder, e, debug.Stack())
+ }
+ }()
+
+ var decFails, encFails int
+ for _, eg := range s.Examples {
+
+ // Test Decoding
+ // Ideally we'd use the beam package coders, but KVs make that complicated.
+ // This can be cleaned up once a type parametered beam.KV type exists.
+ dec := exec.MakeElementDecoder(underTest)
+ encoded := eg.Key.(string)
+ var elem exec.FullValue
+
+ // What I would have expected.
+ // r := charmap.ISO8859_1.NewDecoder().Reader(strings.NewReader(encoded))
+ recoded, err := charmap.ISO8859_1.NewEncoder().String(encoded)
+ if err != nil {
+ return err
+ }
+ r := strings.NewReader(recoded)
+ if err := dec.DecodeTo(r, &elem); err != nil {
+ return fmt.Errorf("err decoding %q: %v", encoded, err)
+ }
+ if !diff(s.Coder, &elem, eg) {
+ decFails++
+ continue
+ }
+
+ // Test Encoding
+ if s.Coder.NonDeterministic {
+ // Skip verifying nondeterministic encodings.
+ continue
+ }
+ enc := exec.MakeElementEncoder(underTest)
+ var out bytes.Buffer
+ if err := enc.Encode(&elem, &out); err != nil {
+ return err
+ }
+ if d := cmp.Diff(recoded, string(out.Bytes())); d != "" {
+ log.Printf("Encoding error: diff(-want,+got): %v\n", d)
+ }
+ }
+ if decFails+encFails > 0 {
+ return fmt.Errorf("failed to decode %v times, and encode %v times", decFails, encFails)
+ }
+
+ return nil
+}
+
+var cmpOpts = []cmp.Option{
+ cmp.Transformer("bytes2string", func(in []byte) (out string) {
+ return string(in)
+ }),
+}
+
+func diff(c Coder, elem *exec.FullValue, eg yaml.MapItem) bool {
+ var got, want interface{}
+ switch c.Urn {
+ case "beam:coder:bytes:v1":
+ got = string(elem.Elm.([]byte))
+ switch egv := eg.Value.(type) {
+ case string:
+ want = egv
+ case []byte:
+ want = string(egv)
+ }
+ case "beam:coder:varint:v1":
+ got, want = elem.Elm.(int64), int64(eg.Value.(int))
+ case "beam:coder:double:v1":
+ got = elem.Elm.(float64)
+ switch v := eg.Value.(string); v {
+ case "NaN":
+ // Do the NaN comparison here since NaN by definition != NaN.
+ if math.IsNaN(got.(float64)) {
+ want, got = 1, 1
+ } else {
+ want = math.NaN()
+ }
+ case "-Infinity":
+ want = math.Inf(-1)
+ case "Infinity":
+ want = math.Inf(1)
+ default:
+ want, _ = strconv.ParseFloat(v, 64)
+ }
+
+ case "beam:coder:kv:v1":
+ v := eg.Value.(yaml.MapSlice)
+ pass := true
+ if !diff(c.Components[0], &exec.FullValue{Elm: elem.Elm}, v[0]) {
+ pass = false
+ }
+ if !diff(c.Components[1], &exec.FullValue{Elm: elem.Elm2}, v[1]) {
+ pass = false
+ }
+ return pass
+
+ case "beam:coder:iterable:v1":
+ pass := true
+ gotrv := reflect.ValueOf(elem.Elm)
+ wantrv := reflect.ValueOf(eg.Value)
+ if gotrv.Len() != wantrv.Len() {
+ log.Printf("Lengths don't match. got %v, want %v; %v, %v", gotrv.Len(), wantrv.Len(), gotrv, wantrv)
+ return false
+ }
+ for i := 0; i < wantrv.Len(); i++ {
+ if !diff(c.Components[0],
+ &exec.FullValue{Elm: gotrv.Index(i).Interface()},
+ yaml.MapItem{Value: wantrv.Index(i).Interface()}) {
+ pass = false
+ }
+
+ }
+ return pass
+ case "beam:coder:interval_window:v1":
+ var a, b int
+ val := eg.Value
+ if is, ok := eg.Value.([]interface{}); ok {
+ val = is[0]
+ }
+ v := val.(yaml.MapSlice)
+
+ a = v[0].Value.(int)
+ b = v[1].Value.(int)
+ end := mtime.FromMilliseconds(int64(a))
+ start := end - mtime.Time(int64(b))
+ want = window.IntervalWindow{Start: start, End: end}
+ // If this is nested in an iterable, windows won't be populated.
+ if len(elem.Windows) == 0 {
+ got = elem.Elm
+ } else {
+ got = elem.Windows[0]
+ }
+
+ case "beam:coder:global_window:v1":
+ want = window.GlobalWindow{}
+ // If this is nested in an iterable, windows won't be populated.
+ if len(elem.Windows) == 0 {
+ got = window.GlobalWindow(elem.Elm.(struct{}))
+ } else {
+ got = elem.Windows[0]
+ }
+ case "beam:coder:windowed_value:v1", "beam:coder:param_windowed_value:v1":
+ // elem contains all the information, but we need to compare the element+timestamp
+ // separately from the windows, to avoid repeated expected value parsing logic.
+ pass := true
+ vs := eg.Value.(yaml.MapSlice)
+ if !diff(c.Components[0], elem, vs[0]) {
+ pass = false
+ }
+ if d := cmp.Diff(
+ mtime.FromMilliseconds(int64(vs[1].Value.(int))),
+ elem.Timestamp, cmpOpts...); d != "" {
+
+ pass = false
+ }
+ if !diff(c.Components[1], elem, vs[3]) {
+ pass = false
+ }
+ // TODO compare pane information.
+ return pass
+ case "beam:coder:row:v1":
+ fs := eg.Value.(yaml.MapSlice)
+ var rfs []reflect.StructField
+ // There are only 2 pointer examples, but they reuse field names,
+ // so we key off the proto hash to know which example we're handling.
+ ptrEg := strings.Contains(c.Payload, "51ace21c7393")
+ for _, rf := range fs {
+ name := rf.Key.(string)
+ t := nameToType[name]
+ if ptrEg {
+ t = reflect.PtrTo(t)
+ }
+ rfs = append(rfs, reflect.StructField{
+ Name: strings.ToUpper(name[:1]) + name[1:],
+ Type: t,
+ Tag: reflect.StructTag(fmt.Sprintf("beam:\"%v\"", name)),
+ })
+ }
+ rv := reflect.New(reflect.StructOf(rfs)).Elem()
+ for i, rf := range fs {
+ setField(rv, i, rf.Value)
+ }
+
+ got, want = elem.Elm, rv.Interface()
+ default:
+ got, want = elem.Elm, eg.Value
+ }
+ if d := cmp.Diff(want, got, cmpOpts...); d != "" {
+ log.Printf("Decoding error: diff(-want,+got): %v\n", d)
+ return false
+ }
+ return true
+}
+
+// standard_coders.yaml uses the name for type indication, except for nullability.
+var nameToType = map[string]reflect.Type{
+ "str": reflectx.String,
+ "i32": reflectx.Int32,
+ "f64": reflectx.Float64,
+ "arr": reflect.SliceOf(reflectx.String),
+ "f_bool": reflectx.Bool,
+ "f_bytes": reflect.PtrTo(reflectx.ByteSlice),
+ "f_map": reflect.MapOf(reflectx.String, reflect.PtrTo(reflectx.Int64)),
+}
+
+func setField(rv reflect.Value, i int, v interface{}) {
+ if v == nil {
+ return
+ }
+ rf := rv.Field(i)
+ if rf.Kind() == reflect.Ptr {
+ // Ensure it's initialized.
+ rf.Set(reflect.New(rf.Type().Elem()))
+ rf = rf.Elem()
+ }
+ switch rf.Kind() {
+ case reflect.String:
+ rf.SetString(v.(string))
+ case reflect.Int32:
+ rf.SetInt(int64(v.(int)))
+ case reflect.Float64:
+ c, err := strconv.ParseFloat(v.(string), 64)
+ if err != nil {
+ panic(err)
+ }
+ rf.SetFloat(c)
+ case reflect.Slice:
+ if rf.Type() == reflectx.ByteSlice {
+ rf.Set(reflect.ValueOf([]byte(v.(string))))
+ break
+ }
+ // Value is a []interface{} with string values.
Review comment:
Is this assumption made specifically based on the yaml file this is meant to be used with? Or is this based on something in the schema spec I'm forgetting?
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -117,17 +176,88 @@ func MakeElementDecoder(c *coder.Coder) ElementDecoder {
return &stringDecoder{}
case coder.Custom:
- return &customDecoder{
+ dec := &customDecoder{
t: c.Custom.Type,
dec: makeDecoder(c.Custom.Dec.Fn),
}
+ fmt.Println("getting decoder", c.Custom)
+ if c.Custom.Name != "schema" {
+ return dec
+ }
+ // Custom schema coding is shorthand for using beam infrastructure
+ // wrapped in a custom coder.
+ switch c.T.Type().Kind() {
+ case reflect.Slice:
+ return &lpDecoder{
+ dec: &iterableDecoder{
+ t: c.Custom.Type,
+ dec: dec,
+ },
+ }
+ case reflect.Array:
+ return &lpDecoder{
+ dec: &arrayDecoder{
Review comment:
Just to confirm, using an `arrayDecoder` without an `arrayEncoder` specifically works because the format that `iterableEncoder` encodes to is also decodable as an array, right? That might be worth mentioning as a comment, because I was wondering why you can decode arrays with an `arrayDecoder` if they were encoded with an `iterableEncoder`.
##########
File path: sdks/go/pkg/beam/core/runtime/graphx/coder.go
##########
@@ -249,31 +256,35 @@ func (b *CoderUnmarshaller) makeCoder(c *pipepb.Coder) (*coder.Coder, error) {
return nil, err
}
- // No payload means this coder was length prefixed by the runner
- // but is likely self describing - AKA a beam coder.
- if len(sub.GetSpec().GetPayload()) == 0 {
- return b.makeCoder(sub)
- }
// TODO(lostluck) 2018/10/17: Make this strict again, once dataflow can use
// the portable pipeline model directly (BEAM-2885)
- if sub.GetSpec().GetUrn() != "" && sub.GetSpec().GetUrn() != urnCustomCoder {
- // TODO(herohde) 11/17/2017: revisit this restriction
- return nil, errors.Errorf("could not unmarshal length prefix coder from %v, want a custom coder as a sub component but got %v", c, sub)
- }
-
- var ref v1pb.CustomCoder
- if err := protox.DecodeBase64(string(sub.GetSpec().GetPayload()), &ref); err != nil {
- return nil, err
- }
- custom, err := decodeCustomCoder(&ref)
- if err != nil {
- return nil, err
+ switch u := sub.GetSpec().GetUrn(); u {
+ case "", urnCustomCoder:
+ var ref v1pb.CustomCoder
+ if err := protox.DecodeBase64(string(sub.GetSpec().GetPayload()), &ref); err != nil {
+ return nil, err
+ }
+ custom, err := decodeCustomCoder(&ref)
+ if err != nil {
+ return nil, err
+ }
+ custom.ID = components[0]
+ t := typex.New(custom.Type)
+ cc := &coder.Coder{Kind: coder.Custom, T: t, Custom: custom}
+ fmt.Println("decoded customcoder", cc)
Review comment:
Looks like a debug Println left in.
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -434,6 +600,267 @@ func convertIfNeeded(v interface{}, allocated *FullValue) *FullValue {
return allocated
}
+type iterableEncoder struct {
+ t reflect.Type
+ enc ElementEncoder
+}
+
+func (c *iterableEncoder) Encode(val *FullValue, w io.Writer) error {
+ // Do a reflect, get the length.
+ rv := reflect.ValueOf(val.Elm)
+ size := rv.Len()
+ if err := coder.EncodeInt32((int32)(size), w); err != nil {
+ return err
+ }
+ var e FullValue
+ for i := 0; i < size; i++ {
+ e.Elm = rv.Index(i).Interface()
+ err := c.enc.Encode(&e, w)
+ if err != nil {
+ return err
+ }
+ }
+ return nil
+}
+
+type iterableDecoder struct {
+ t reflect.Type
+ dec ElementDecoder
+}
+
+func (c *iterableDecoder) DecodeTo(r io.Reader, fv *FullValue) error {
+ // (1) Read count prefixed encoded data
+
+ size, err := coder.DecodeInt32(r)
+ if err != nil {
+ return err
+ }
+ n := int(size)
+ switch {
+ case n >= 0:
+ rv, err := c.decodeToSlice(int(n), r)
Review comment:
Is it necessary to cast n to an int here? Isn't it already an int from line 638?
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -434,6 +600,267 @@ func convertIfNeeded(v interface{}, allocated *FullValue) *FullValue {
return allocated
}
+type iterableEncoder struct {
+ t reflect.Type
+ enc ElementEncoder
+}
+
+func (c *iterableEncoder) Encode(val *FullValue, w io.Writer) error {
+ // Do a reflect, get the length.
+ rv := reflect.ValueOf(val.Elm)
+ size := rv.Len()
+ if err := coder.EncodeInt32((int32)(size), w); err != nil {
+ return err
+ }
+ var e FullValue
+ for i := 0; i < size; i++ {
+ e.Elm = rv.Index(i).Interface()
+ err := c.enc.Encode(&e, w)
+ if err != nil {
+ return err
+ }
+ }
+ return nil
+}
+
+type iterableDecoder struct {
+ t reflect.Type
+ dec ElementDecoder
+}
+
+func (c *iterableDecoder) DecodeTo(r io.Reader, fv *FullValue) error {
+ // (1) Read count prefixed encoded data
+
+ size, err := coder.DecodeInt32(r)
+ if err != nil {
+ return err
+ }
+ n := int(size)
+ switch {
+ case n >= 0:
+ rv, err := c.decodeToSlice(int(n), r)
+ if err != nil {
+ return err
+ }
+ *fv = FullValue{Elm: rv.Interface()}
+ return nil
+ case n == -1:
+ rv := reflect.MakeSlice(c.t, 0, 0)
+ chunk, err := coder.DecodeVarInt(r)
+ if err != nil {
+ return err
+ }
+ for chunk != 0 {
+ rvi, err := c.decodeToSlice(int(chunk), r)
+ if err != nil {
+ return err
+ }
+ rv = reflect.AppendSlice(rv, rvi)
+ chunk, err = coder.DecodeVarInt(r)
+ if err != nil {
+ return err
+ }
+ }
+ *fv = FullValue{Elm: rv.Interface()}
+ }
+
+ return nil
+}
+
+func (c *iterableDecoder) decodeToSlice(n int, r io.Reader) (reflect.Value, error) {
+ var e FullValue
+ rv := reflect.MakeSlice(c.t, n, n)
+ for i := 0; i < int(n); i++ {
+ err := c.dec.DecodeTo(r, &e)
+ if err != nil {
+ return reflect.Value{}, err
+ }
+ if e.Elm != nil {
+ rv.Index(i).Set(reflect.ValueOf(e.Elm))
+ } else {
+ rv.Index(i).Set(reflect.ValueOf(e.Windows[0]))
Review comment:
I don't get why it's setting the value of the element to `e.Windows[0]`. Is it a way to pass in nil?
##########
File path: sdks/go/pkg/beam/core/runtime/exec/coder.go
##########
@@ -434,6 +600,267 @@ func convertIfNeeded(v interface{}, allocated *FullValue) *FullValue {
return allocated
}
+type iterableEncoder struct {
+ t reflect.Type
+ enc ElementEncoder
+}
+
+func (c *iterableEncoder) Encode(val *FullValue, w io.Writer) error {
+ // Do a reflect, get the length.
+ rv := reflect.ValueOf(val.Elm)
+ size := rv.Len()
+ if err := coder.EncodeInt32((int32)(size), w); err != nil {
+ return err
+ }
+ var e FullValue
+ for i := 0; i < size; i++ {
+ e.Elm = rv.Index(i).Interface()
+ err := c.enc.Encode(&e, w)
+ if err != nil {
+ return err
+ }
+ }
+ return nil
+}
+
+type iterableDecoder struct {
+ t reflect.Type
+ dec ElementDecoder
+}
+
+func (c *iterableDecoder) DecodeTo(r io.Reader, fv *FullValue) error {
+ // (1) Read count prefixed encoded data
+
+ size, err := coder.DecodeInt32(r)
+ if err != nil {
+ return err
+ }
+ n := int(size)
+ switch {
+ case n >= 0:
+ rv, err := c.decodeToSlice(int(n), r)
+ if err != nil {
+ return err
+ }
+ *fv = FullValue{Elm: rv.Interface()}
+ return nil
+ case n == -1:
+ rv := reflect.MakeSlice(c.t, 0, 0)
+ chunk, err := coder.DecodeVarInt(r)
+ if err != nil {
+ return err
+ }
+ for chunk != 0 {
+ rvi, err := c.decodeToSlice(int(chunk), r)
+ if err != nil {
+ return err
+ }
+ rv = reflect.AppendSlice(rv, rvi)
+ chunk, err = coder.DecodeVarInt(r)
+ if err != nil {
+ return err
+ }
+ }
+ *fv = FullValue{Elm: rv.Interface()}
+ }
+
+ return nil
+}
+
+func (c *iterableDecoder) decodeToSlice(n int, r io.Reader) (reflect.Value, error) {
+ var e FullValue
+ rv := reflect.MakeSlice(c.t, n, n)
+ for i := 0; i < int(n); i++ {
Review comment:
Likewise, is it necessary to cast n here too?
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