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Posted to users@taverna.apache.org by divzee Chandrashakher <di...@gmail.com> on 2015/06/28 00:23:55 UTC
Taverna player usage
Hi,
I am newbie to Taverna. I could install Taverna Server (v 2.5.4) and
Taverna player (v 0.11.0) in CentOS Virtual machine. For player
installation, I followed the tutorial at
http://mygrid.github.io/taverna-player/0.11.0/
1. In the above link, under "Essential (required) configuration", I am not
able to understand the following snippet to be included in taverna_player.rb
config.workflow_model_proxy("Workflow") do |proxy|
proxy.file_method_name = :file_name
end
Shall i simply copy the above lines to taverna_player.rb file? I don't know
ruby much.
2. I am using the 'dummy' rails application that is available within the
taverna_player gem installtion folder to test the server & player
installation. I configured the taverna_server.rb to point to my server
installation.
*Server*
http://localhost:8080/ts254/
--- works fine. prints the taverna help page
*Player (started the rails server)*
http://localhost:3000/
The above url displays the following error:
Couldn't find TavernaPlayer::Workflow with id=3
I'm have no clue how id gets the value 3. I am not able to understand where
the workflows are stored and how the taverna player can request the server
to execute a particular workflow from the pool of workflows. Please help me.
Thanks in advance
Rakesh
Re: Taverna player usage
Posted by Stian Soiland-Reyes <st...@apache.org>.
(Forwarding to list on behalf of Finn)
On 2 July 2015 at 18:27, Finn Bacall <fi...@manchester.ac.uk> wrote:
> Hi all,
>
> It seems this issue is caused by a missing dependency: "ghostscript"
>
> Installing this via apt-get, or using the latest docker image (when it has
> finished building [1]) should fix this issue.
>
> Cheers,
>
> Finn
>
> [1]
> https://registry.hub.docker.com/u/fbacall/taverna-player-portal/builds_history/226759/
>
>
>
> On 02/07/2015 17:18, Stian Soiland-Reyes wrote:
>>
>> Thanks for describing what you did to start the Taverna Player. I have
>> copied Finn Bacall who has been maintaining it.
>>
>> Just to have a try, you could also use these two Docker images:
>>
>>
>> docker run --name taverna -p 8080:8080 -d stain/taverna-server
>> docker run --name taverna-portal --link taverna:taverna -p 3000:3000
>> -d fbacall/taverna-player-portal
>>
>> That will start up this portal on http://localhost:3000/ - linked to
>> http://localhost:8080/
>>
>> ... however it gives the same NotIdentifiedByImageMagickError.
>>
>> In the log I get:
>>
>> I, [2015-07-02T16:07:50.952952 #1] INFO -- : Command :: file -b
>> --mime '/tmp/image_35283445860253326820150702-1-go20s8'
>> I, [2015-07-02T16:07:50.965587 #1] INFO -- : Command :: identify
>> -format '%wx%h,%[exif:orientation]'
>> '/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
>> 2>/dev/null
>> I, [2015-07-02T16:07:51.036714 #1] INFO -- : [paperclip] An error was
>> received while processing:
>> #<Paperclip::Errors::NotIdentifiedByImageMagickError:
>> Paperclip::Errors::NotIdentifiedByImageMagickError>
>> I, [2015-07-02T16:07:51.036971 #1] INFO -- : Command :: identify
>> -format '%wx%h,%[exif:orientation]'
>> '/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
>> 2>/dev/null
>> I, [2015-07-02T16:07:51.094239 #1] INFO -- : [paperclip] An error was
>> received while processing:
>> #<Paperclip::Errors::NotIdentifiedByImageMagickError:
>> Paperclip::Errors::NotIdentifiedByImageMagickError>
>>
>>
>> yet identify works in the shell:
>>
>>
>> root@da925ce1ee9b:/taverna-player-portal/log# identify -format
>> '%wx%h,%[exif:orientation]'
>> '/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
>> 2>/dev/null ; echo
>> 1890x301,
>>
>>
>> 2c3f3120c2ed474472b4efe085057bd820150702 is a dot file of the t2flow.
>>
>>
>>
>> Any idea, Finn?
>>
>> On 2 July 2015 at 14:27, divzee Chandrashakher <di...@gmail.com>
>> wrote:
>>>
>>> Hi Denis,
>>>
>>> Thank you for your step-wise instructions. I installed ruby 2.1.6 and
>>> followed the steps. But still I couldn't succeed (see below from A to F).
>>> I
>>> am thinking of writing simple web page that uses restful api of taverna
>>> server to execute workflows. Its a pity that there is no easy/simple
>>> guide
>>> for taverna beginners to install server and portal. I believe this might
>>> slow down user's adoption of taverna.
>>>
>>> A. "rake setup" did not work.
>>> [admin@localhost taverna-player-portal-master]$ rake setup
>>> rake aborted!
>>> Don't know how to build task 'setup'
>>>
>>> (See full trace by running task with --trace)
>>>
>>> B. So I simply invoked "rake". But it threw error which is something to
>>> do
>>> with paperclip (Diagram
>>> Paperclip::Errors::NotIdentifiedByImageMagickError)
>>> [admin@localhost taverna-player-portal-master]$ rake
>>> [Coveralls] Set up the SimpleCov formatter.
>>> [Coveralls] Using SimpleCov's 'rails' settings.
>>> DEPRECATION WARNING: superclass_delegating_accessor is deprecated and
>>> will
>>> be removed from Rails 5.0 (use class_attribute instead). (called from
>>> <top
>>> (required)> at
>>>
>>> /home/admin/01_Installations/taverna-player-portal-master/test/performance/authorization_test.rb:4)
>>> Run options: --seed 3155
>>>
>>> # Running:
>>>
>>> ....EEE.EEEEEEEEE.EEEEE.EFEEEEEEEEFEE...
>>>
>>> Finished in 4.373955s, 9.1450 runs/s, 3.8866 assertions/s.
>>>
>>> 1) Error:
>>> TavernaPlayer::RunsControllerTest#test_should_get_edit_form_if_admin:
>>> ActiveRecord::RecordInvalid: Validation failed: Diagram
>>> Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
>>> Paperclip::Errors::NotIdentifiedByImageMagickError
>>> test/controllers/taverna_player/runs_controller_test.rb:43:in `block
>>> in
>>> <class:RunsControllerTest>'
>>>
>>> (output cut)
>>>
>>> 30) Error:
>>> WorkflowsTest#test_filters_out_non-visible_workflows:
>>> ActiveRecord::RecordInvalid: Validation failed: Diagram
>>> Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
>>> Paperclip::Errors::NotIdentifiedByImageMagickError
>>> test/models/workflows_test.rb:22:in `block in <class:WorkflowsTest>'
>>>
>>> 40 runs, 17 assertions, 2 failures, 28 errors, 0 skips
>>> [Coveralls] Outside the CI environment, not sending data.
>>> [admin@localhost taverna-player-portal-master]$
>>>
>>>
>>> C. accessing portal via http://localhost:3000 asked me to run the
>>> following
>>> command. so I executed it
>>> [admin@localhost taverna-player-portal-master]$ bin/rake db:migrate
>>> RAILS_ENV=development
>>>
>>> D. Started server again
>>> [admin@localhost taverna-player-portal-master]$ bin/rails s
>>> => Booting WEBrick
>>> => Rails 4.2.1 application starting in development on
>>> http://localhost:3000
>>> => Run `rails server -h` for more startup options
>>> => Ctrl-C to shutdown server
>>> [2015-07-01 23:26:46] INFO WEBrick 1.3.1
>>> [2015-07-01 23:26:46] INFO ruby 2.1.6 (2015-04-13) [x86_64-linux]
>>> [2015-07-01 23:26:46] INFO WEBrick::HTTPServer#start: pid=12947
>>> port=3000
>>>
>>> E. from another console started job worker
>>> [admin@localhost taverna-player-portal-master]$ bin/rake jobs:work
>>> [Worker(host:localhost.localdomain pid:13058)] Starting job worker
>>>
>>> F. I could see the portal home page. Registered and logged in to upload
>>> taverna workflow. But this step failed with the following error
>>>
>>> 2 errors prohibited this workflow from being saved:
>>>
>>> Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
>>> Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
>>>
>>> Thanks
>>> Rakesh
>>>
>>> On Sun, Jun 28, 2015 at 11:42 AM, Denis Karyakin <sa...@gmail.com>
>>> wrote:
>>>>
>>>> Hello,
>>>> Taverna-player - only middleware for run workflows in Taverna Server. I
>>>> am
>>>> not so long ago work with taverna, so more experienced members can
>>>> correct
>>>> me.
>>>>
>>>> For run workflows you can use taverna-player-portal. For get this
>>>> application go to https://github.com/myGrid/taverna-player-portal and
>>>> download zip archive or clone git repository.
>>>> You should have installed ruby 2.1.6 version.
>>>>
>>>> Copy file
>>>> `taverna-player-portal/config/initializers/taverna_server.rb.example` to
>>>> `taverna-player-portal/config/initializers/taverna_server.rb` and modify
>>>> server_address to your server url.
>>>>
>>>> After this go to folder taverna-player-portal and run following
>>>> commands:
>>>> rake setup - for install dependencies and create database
>>>> rails s - for start rails server with UI
>>>> rake jobs:work - for start queues server, that will be control run
>>>> workflow in Taverna Server.
>>>>
>>>> Now you can go to url localhost:3000 for upload and run workflows
>>>>
>>>>
>>>> 2015-06-28 1:23 GMT+03:00 divzee Chandrashakher <di...@gmail.com>:
>>>>>
>>>>> Hi,
>>>>>
>>>>> I am newbie to Taverna. I could install Taverna Server (v 2.5.4) and
>>>>> Taverna player (v 0.11.0) in CentOS Virtual machine. For player
>>>>> installation, I followed the tutorial at
>>>>>
>>>>> http://mygrid.github.io/taverna-player/0.11.0/
>>>>>
>>>>> 1. In the above link, under "Essential (required) configuration", I am
>>>>> not able to understand the following snippet to be included in
>>>>> taverna_player.rb
>>>>>
>>>>> config.workflow_model_proxy("Workflow") do |proxy|
>>>>> proxy.file_method_name = :file_name
>>>>> end
>>>>>
>>>>> Shall i simply copy the above lines to taverna_player.rb file? I don't
>>>>> know ruby much.
>>>>>
>>>>> 2. I am using the 'dummy' rails application that is available within
>>>>> the
>>>>> taverna_player gem installtion folder to test the server & player
>>>>> installation. I configured the taverna_server.rb to point to my server
>>>>> installation.
>>>>>
>>>>> Server
>>>>> http://localhost:8080/ts254/
>>>>> --- works fine. prints the taverna help page
>>>>>
>>>>> Player (started the rails server)
>>>>> http://localhost:3000/
>>>>>
>>>>> The above url displays the following error:
>>>>> Couldn't find TavernaPlayer::Workflow with id=3
>>>>>
>>>>> I'm have no clue how id gets the value 3. I am not able to understand
>>>>> where the workflows are stored and how the taverna player can request
>>>>> the
>>>>> server to execute a particular workflow from the pool of workflows.
>>>>> Please
>>>>> help me.
>>>>>
>>>>> Thanks in advance
>>>>> Rakesh
>>>>>
>>>>>
>>>>>
>>>
>>>
>>> --
>>> Divya C
>>> www.dealbitte.com
>>> Ideas for smart shopping
>>
>>
>>
>
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718
Re: Taverna player usage
Posted by Stian Soiland-Reyes <st...@apache.org>.
Thanks for describing what you did to start the Taverna Player. I have
copied Finn Bacall who has been maintaining it.
Just to have a try, you could also use these two Docker images:
docker run --name taverna -p 8080:8080 -d stain/taverna-server
docker run --name taverna-portal --link taverna:taverna -p 3000:3000
-d fbacall/taverna-player-portal
That will start up this portal on http://localhost:3000/ - linked to
http://localhost:8080/
... however it gives the same NotIdentifiedByImageMagickError.
In the log I get:
I, [2015-07-02T16:07:50.952952 #1] INFO -- : Command :: file -b
--mime '/tmp/image_35283445860253326820150702-1-go20s8'
I, [2015-07-02T16:07:50.965587 #1] INFO -- : Command :: identify
-format '%wx%h,%[exif:orientation]'
'/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
2>/dev/null
I, [2015-07-02T16:07:51.036714 #1] INFO -- : [paperclip] An error was
received while processing:
#<Paperclip::Errors::NotIdentifiedByImageMagickError:
Paperclip::Errors::NotIdentifiedByImageMagickError>
I, [2015-07-02T16:07:51.036971 #1] INFO -- : Command :: identify
-format '%wx%h,%[exif:orientation]'
'/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
2>/dev/null
I, [2015-07-02T16:07:51.094239 #1] INFO -- : [paperclip] An error was
received while processing:
#<Paperclip::Errors::NotIdentifiedByImageMagickError:
Paperclip::Errors::NotIdentifiedByImageMagickError>
yet identify works in the shell:
root@da925ce1ee9b:/taverna-player-portal/log# identify -format
'%wx%h,%[exif:orientation]'
'/tmp/2c3f3120c2ed474472b4efe085057bd820150702-1-1quss2a[0]'
2>/dev/null ; echo
1890x301,
2c3f3120c2ed474472b4efe085057bd820150702 is a dot file of the t2flow.
Any idea, Finn?
On 2 July 2015 at 14:27, divzee Chandrashakher <di...@gmail.com> wrote:
> Hi Denis,
>
> Thank you for your step-wise instructions. I installed ruby 2.1.6 and
> followed the steps. But still I couldn't succeed (see below from A to F). I
> am thinking of writing simple web page that uses restful api of taverna
> server to execute workflows. Its a pity that there is no easy/simple guide
> for taverna beginners to install server and portal. I believe this might
> slow down user's adoption of taverna.
>
> A. "rake setup" did not work.
> [admin@localhost taverna-player-portal-master]$ rake setup
> rake aborted!
> Don't know how to build task 'setup'
>
> (See full trace by running task with --trace)
>
> B. So I simply invoked "rake". But it threw error which is something to do
> with paperclip (Diagram Paperclip::Errors::NotIdentifiedByImageMagickError)
> [admin@localhost taverna-player-portal-master]$ rake
> [Coveralls] Set up the SimpleCov formatter.
> [Coveralls] Using SimpleCov's 'rails' settings.
> DEPRECATION WARNING: superclass_delegating_accessor is deprecated and will
> be removed from Rails 5.0 (use class_attribute instead). (called from <top
> (required)> at
> /home/admin/01_Installations/taverna-player-portal-master/test/performance/authorization_test.rb:4)
> Run options: --seed 3155
>
> # Running:
>
> ....EEE.EEEEEEEEE.EEEEE.EFEEEEEEEEFEE...
>
> Finished in 4.373955s, 9.1450 runs/s, 3.8866 assertions/s.
>
> 1) Error:
> TavernaPlayer::RunsControllerTest#test_should_get_edit_form_if_admin:
> ActiveRecord::RecordInvalid: Validation failed: Diagram
> Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
> Paperclip::Errors::NotIdentifiedByImageMagickError
> test/controllers/taverna_player/runs_controller_test.rb:43:in `block in
> <class:RunsControllerTest>'
>
> (output cut)
>
> 30) Error:
> WorkflowsTest#test_filters_out_non-visible_workflows:
> ActiveRecord::RecordInvalid: Validation failed: Diagram
> Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
> Paperclip::Errors::NotIdentifiedByImageMagickError
> test/models/workflows_test.rb:22:in `block in <class:WorkflowsTest>'
>
> 40 runs, 17 assertions, 2 failures, 28 errors, 0 skips
> [Coveralls] Outside the CI environment, not sending data.
> [admin@localhost taverna-player-portal-master]$
>
>
> C. accessing portal via http://localhost:3000 asked me to run the following
> command. so I executed it
> [admin@localhost taverna-player-portal-master]$ bin/rake db:migrate
> RAILS_ENV=development
>
> D. Started server again
> [admin@localhost taverna-player-portal-master]$ bin/rails s
> => Booting WEBrick
> => Rails 4.2.1 application starting in development on http://localhost:3000
> => Run `rails server -h` for more startup options
> => Ctrl-C to shutdown server
> [2015-07-01 23:26:46] INFO WEBrick 1.3.1
> [2015-07-01 23:26:46] INFO ruby 2.1.6 (2015-04-13) [x86_64-linux]
> [2015-07-01 23:26:46] INFO WEBrick::HTTPServer#start: pid=12947 port=3000
>
> E. from another console started job worker
> [admin@localhost taverna-player-portal-master]$ bin/rake jobs:work
> [Worker(host:localhost.localdomain pid:13058)] Starting job worker
>
> F. I could see the portal home page. Registered and logged in to upload
> taverna workflow. But this step failed with the following error
>
> 2 errors prohibited this workflow from being saved:
>
> Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
> Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
>
> Thanks
> Rakesh
>
> On Sun, Jun 28, 2015 at 11:42 AM, Denis Karyakin <sa...@gmail.com>
> wrote:
>>
>> Hello,
>> Taverna-player - only middleware for run workflows in Taverna Server. I am
>> not so long ago work with taverna, so more experienced members can correct
>> me.
>>
>> For run workflows you can use taverna-player-portal. For get this
>> application go to https://github.com/myGrid/taverna-player-portal and
>> download zip archive or clone git repository.
>> You should have installed ruby 2.1.6 version.
>>
>> Copy file
>> `taverna-player-portal/config/initializers/taverna_server.rb.example` to
>> `taverna-player-portal/config/initializers/taverna_server.rb` and modify
>> server_address to your server url.
>>
>> After this go to folder taverna-player-portal and run following commands:
>> rake setup - for install dependencies and create database
>> rails s - for start rails server with UI
>> rake jobs:work - for start queues server, that will be control run
>> workflow in Taverna Server.
>>
>> Now you can go to url localhost:3000 for upload and run workflows
>>
>>
>> 2015-06-28 1:23 GMT+03:00 divzee Chandrashakher <di...@gmail.com>:
>>>
>>> Hi,
>>>
>>> I am newbie to Taverna. I could install Taverna Server (v 2.5.4) and
>>> Taverna player (v 0.11.0) in CentOS Virtual machine. For player
>>> installation, I followed the tutorial at
>>>
>>> http://mygrid.github.io/taverna-player/0.11.0/
>>>
>>> 1. In the above link, under "Essential (required) configuration", I am
>>> not able to understand the following snippet to be included in
>>> taverna_player.rb
>>>
>>> config.workflow_model_proxy("Workflow") do |proxy|
>>> proxy.file_method_name = :file_name
>>> end
>>>
>>> Shall i simply copy the above lines to taverna_player.rb file? I don't
>>> know ruby much.
>>>
>>> 2. I am using the 'dummy' rails application that is available within the
>>> taverna_player gem installtion folder to test the server & player
>>> installation. I configured the taverna_server.rb to point to my server
>>> installation.
>>>
>>> Server
>>> http://localhost:8080/ts254/
>>> --- works fine. prints the taverna help page
>>>
>>> Player (started the rails server)
>>> http://localhost:3000/
>>>
>>> The above url displays the following error:
>>> Couldn't find TavernaPlayer::Workflow with id=3
>>>
>>> I'm have no clue how id gets the value 3. I am not able to understand
>>> where the workflows are stored and how the taverna player can request the
>>> server to execute a particular workflow from the pool of workflows. Please
>>> help me.
>>>
>>> Thanks in advance
>>> Rakesh
>>>
>>>
>>>
>>
>
>
>
> --
> Divya C
> www.dealbitte.com
> Ideas for smart shopping
--
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718
Re: Taverna player usage
Posted by divzee Chandrashakher <di...@gmail.com>.
Hi Denis,
Thank you for your step-wise instructions. I installed ruby 2.1.6 and
followed the steps. But still I couldn't succeed (see below from A to F). I
am thinking of writing simple web page that uses restful api of taverna
server to execute workflows. Its a pity that there is no easy/simple guide
for taverna beginners to install server and portal. I believe this might
slow down user's adoption of taverna.
A. "rake setup" did not work.
[admin@localhost taverna-player-portal-master]$ rake setup
rake aborted!
Don't know how to build task 'setup'
(See full trace by running task with --trace)
B. So I simply invoked "rake". But it threw error which is something to do
with paperclip (Diagram Paperclip::Errors::NotIdentifiedByImageMagickError)
[admin@localhost taverna-player-portal-master]$ rake
[Coveralls] Set up the SimpleCov formatter.
[Coveralls] Using SimpleCov's 'rails' settings.
DEPRECATION WARNING: superclass_delegating_accessor is deprecated and will
be removed from Rails 5.0 (use class_attribute instead). (called from <top
(required)> at
/home/admin/01_Installations/taverna-player-portal-master/test/performance/authorization_test.rb:4)
Run options: --seed 3155
# Running:
....EEE.EEEEEEEEE.EEEEE.EFEEEEEEEEFEE...
Finished in 4.373955s, 9.1450 runs/s, 3.8866 assertions/s.
1) Error:
TavernaPlayer::RunsControllerTest#test_should_get_edit_form_if_admin:
ActiveRecord::RecordInvalid: Validation failed: Diagram
Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
Paperclip::Errors::NotIdentifiedByImageMagickError
test/controllers/taverna_player/runs_controller_test.rb:43:in `block in
<class:RunsControllerTest>'
(output cut)
30) Error:
WorkflowsTest#test_filters_out_non-visible_workflows:
ActiveRecord::RecordInvalid: Validation failed: Diagram
Paperclip::Errors::NotIdentifiedByImageMagickError, Diagram
Paperclip::Errors::NotIdentifiedByImageMagickError
test/models/workflows_test.rb:22:in `block in <class:WorkflowsTest>'
40 runs, 17 assertions, 2 failures, 28 errors, 0 skips
[Coveralls] Outside the CI environment, not sending data.
[admin@localhost taverna-player-portal-master]$
C. accessing portal via http://localhost:3000 asked me to run the following
command. so I executed it
[admin@localhost taverna-player-portal-master]$ bin/rake db:migrate
RAILS_ENV=development
D. Started server again
[admin@localhost taverna-player-portal-master]$ bin/rails s
=> Booting WEBrick
=> Rails 4.2.1 application starting in development on http://localhost:3000
=> Run `rails server -h` for more startup options
=> Ctrl-C to shutdown server
[2015-07-01 23:26:46] INFO WEBrick 1.3.1
[2015-07-01 23:26:46] INFO ruby 2.1.6 (2015-04-13) [x86_64-linux]
[2015-07-01 23:26:46] INFO WEBrick::HTTPServer#start: pid=12947 port=3000
E. from another console started job worker
[admin@localhost taverna-player-portal-master]$ bin/rake jobs:work
[Worker(host:localhost.localdomain pid:13058)] Starting job worker
F. I could see the portal home page. Registered and logged in to upload
taverna workflow. But this step failed with the following error
2 errors prohibited this workflow from being saved:
Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
Diagram Paperclip::Errors::NotIdentifiedByImageMagickError
Thanks
Rakesh
On Sun, Jun 28, 2015 at 11:42 AM, Denis Karyakin <sa...@gmail.com>
wrote:
> Hello,
> Taverna-player - only middleware for run workflows in Taverna Server. I am
> not so long ago work with taverna, so more experienced members can correct
> me.
>
> For run workflows you can use taverna-player-portal. For get this
> application go to https://github.com/myGrid/taverna-player-portal and
> download zip archive or clone git repository.
> You should have installed ruby 2.1.6 version.
>
> Copy file
> `taverna-player-portal/config/initializers/taverna_server.rb.example` to
> `taverna-player-portal/config/initializers/taverna_server.rb` and modify
> server_address to your server url.
>
> After this go to folder taverna-player-portal and run following commands:
> rake setup - for install dependencies and create database
> rails s - for start rails server with UI
> rake jobs:work - for start queues server, that will be control run
> workflow in Taverna Server.
>
> Now you can go to url localhost:3000 for upload and run workflows
>
>
> 2015-06-28 1:23 GMT+03:00 divzee Chandrashakher <di...@gmail.com>:
>
>> Hi,
>>
>> I am newbie to Taverna. I could install Taverna Server (v 2.5.4) and
>> Taverna player (v 0.11.0) in CentOS Virtual machine. For player
>> installation, I followed the tutorial at
>>
>> http://mygrid.github.io/taverna-player/0.11.0/
>>
>> 1. In the above link, under "Essential (required) configuration", I am
>> not able to understand the following snippet to be included in
>> taverna_player.rb
>>
>> config.workflow_model_proxy("Workflow") do |proxy|
>> proxy.file_method_name = :file_name
>> end
>>
>> Shall i simply copy the above lines to taverna_player.rb file? I don't
>> know ruby much.
>>
>> 2. I am using the 'dummy' rails application that is available within the
>> taverna_player gem installtion folder to test the server & player
>> installation. I configured the taverna_server.rb to point to my server
>> installation.
>>
>> *Server*
>> http://localhost:8080/ts254/
>> --- works fine. prints the taverna help page
>>
>> *Player (started the rails server)*
>> http://localhost:3000/
>>
>> The above url displays the following error:
>> Couldn't find TavernaPlayer::Workflow with id=3
>>
>> I'm have no clue how id gets the value 3. I am not able to understand
>> where the workflows are stored and how the taverna player can request the
>> server to execute a particular workflow from the pool of workflows. Please
>> help me.
>>
>> Thanks in advance
>> Rakesh
>>
>>
>>
>>
>
--
Divya C
www.dealbitte.com
*Ideas for smart shopping*
Re: Taverna player usage
Posted by Denis Karyakin <sa...@gmail.com>.
Hello,
Taverna-player - only middleware for run workflows in Taverna Server. I am
not so long ago work with taverna, so more experienced members can correct
me.
For run workflows you can use taverna-player-portal. For get this
application go to https://github.com/myGrid/taverna-player-portal and
download zip archive or clone git repository.
You should have installed ruby 2.1.6 version.
Copy file
`taverna-player-portal/config/initializers/taverna_server.rb.example` to
`taverna-player-portal/config/initializers/taverna_server.rb` and modify
server_address to your server url.
After this go to folder taverna-player-portal and run following commands:
rake setup - for install dependencies and create database
rails s - for start rails server with UI
rake jobs:work - for start queues server, that will be control run workflow
in Taverna Server.
Now you can go to url localhost:3000 for upload and run workflows
2015-06-28 1:23 GMT+03:00 divzee Chandrashakher <di...@gmail.com>:
> Hi,
>
> I am newbie to Taverna. I could install Taverna Server (v 2.5.4) and
> Taverna player (v 0.11.0) in CentOS Virtual machine. For player
> installation, I followed the tutorial at
>
> http://mygrid.github.io/taverna-player/0.11.0/
>
> 1. In the above link, under "Essential (required) configuration", I am not
> able to understand the following snippet to be included in taverna_player.rb
>
> config.workflow_model_proxy("Workflow") do |proxy|
> proxy.file_method_name = :file_name
> end
>
> Shall i simply copy the above lines to taverna_player.rb file? I don't
> know ruby much.
>
> 2. I am using the 'dummy' rails application that is available within the
> taverna_player gem installtion folder to test the server & player
> installation. I configured the taverna_server.rb to point to my server
> installation.
>
> *Server*
> http://localhost:8080/ts254/
> --- works fine. prints the taverna help page
>
> *Player (started the rails server)*
> http://localhost:3000/
>
> The above url displays the following error:
> Couldn't find TavernaPlayer::Workflow with id=3
>
> I'm have no clue how id gets the value 3. I am not able to understand
> where the workflows are stored and how the taverna player can request the
> server to execute a particular workflow from the pool of workflows. Please
> help me.
>
> Thanks in advance
> Rakesh
>
>
>
>